Wall clock time and date at job start Mon Mar 30 2020 04:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47106 * 357.72506 * 3 2 1 5 5 N 1.46495 * 109.47093 * 184.94337 * 4 3 2 6 6 C 1.46505 * 119.99988 * 94.92600 * 5 4 3 7 7 C 1.50700 * 109.47409 * 269.99938 * 6 5 4 8 8 H 1.08005 * 119.99621 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00303 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99680 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46795 * 180.02562 * 11 9 7 13 13 H 1.48497 * 109.47132 * 300.00331 * 11 9 7 14 14 H 1.48494 * 109.47082 * 60.00450 * 11 9 7 15 15 C 1.34777 * 120.00404 * 274.93289 * 5 4 3 16 16 O 1.21278 * 120.00275 * 174.77337 * 15 5 4 17 17 C 1.50700 * 119.99667 * 354.76538 * 15 5 4 18 18 H 1.09004 * 110.01499 * 33.47390 * 17 15 5 19 19 C 1.54272 * 110.03145 * 154.86083 * 17 15 5 20 20 C 1.54891 * 104.19189 * 142.89987 * 19 17 15 21 21 C 1.54888 * 102.75125 * 322.05535 * 20 19 17 22 22 C 1.53867 * 110.03747 * 272.02918 * 17 15 5 23 23 H 1.09005 * 110.03398 * 121.43073 * 22 17 15 24 24 N 1.46904 * 110.03277 * 0.02562 * 22 17 15 25 25 H 1.08999 * 109.46993 * 237.72276 * 3 2 1 26 26 H 1.09004 * 109.46815 * 117.72023 * 3 2 1 27 27 H 1.08996 * 109.47106 * 64.94311 * 4 3 2 28 28 H 1.08995 * 109.47120 * 304.94238 * 4 3 2 29 29 H 1.09004 * 109.46815 * 150.00242 * 6 5 4 30 30 H 1.08997 * 109.46854 * 30.00669 * 6 5 4 31 31 H 0.97000 * 120.00012 * 179.97438 * 10 9 7 32 32 H 1.09002 * 110.48667 * 261.57426 * 19 17 15 33 33 H 1.08997 * 110.48418 * 24.22358 * 19 17 15 34 34 H 1.08999 * 110.75958 * 80.37767 * 20 19 17 35 35 H 1.09000 * 110.75000 * 203.56306 * 20 19 17 36 36 H 1.08991 * 110.48666 * 156.62188 * 21 20 19 37 37 H 1.09001 * 110.48885 * 279.27052 * 21 20 19 38 38 H 1.00897 * 111.00017 * 174.75809 * 24 22 17 39 39 H 1.00897 * 110.99602 * 298.71286 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4404 0.0573 5 7 4.5787 -1.4368 0.1762 6 6 5.2063 -1.5302 1.4968 7 6 5.4093 -0.1455 2.0557 8 1 5.1013 0.7179 1.4845 9 6 5.9873 0.0193 3.2965 10 7 6.3620 -1.0321 3.9922 11 14 6.2383 1.7357 3.9895 12 1 6.8746 1.6409 5.3280 13 1 7.1159 2.5138 3.0788 14 1 4.9245 2.4168 4.1126 15 6 5.3448 -1.3473 -0.9290 16 8 6.5491 -1.2487 -0.8258 17 6 4.7048 -1.3700 -2.2932 18 1 3.7289 -0.8857 -2.2555 19 6 5.6117 -0.6525 -3.3144 20 6 5.4522 -1.4822 -4.6125 21 6 5.3769 -2.9356 -4.0823 22 6 4.5555 -2.8214 -2.7815 23 1 3.5070 -3.0422 -2.9814 24 7 5.0813 -3.7489 -1.7708 25 1 2.9711 0.5496 0.8689 26 1 2.9711 0.4789 -0.9098 27 1 2.8296 -1.9648 -0.8536 28 1 2.6851 -1.9455 0.9203 29 1 6.1706 -2.0304 1.4062 30 1 4.5622 -2.1012 2.1655 31 1 6.7690 -0.9162 4.8650 32 1 5.2729 0.3715 -3.4721 33 1 6.6485 -0.6650 -2.9785 34 1 4.5332 -1.2127 -5.1329 35 1 6.3162 -1.3501 -5.2639 36 1 4.8669 -3.5776 -4.8004 37 1 6.3759 -3.3167 -3.8705 38 1 4.9136 -4.7074 -2.0377 39 1 6.0633 -3.5858 -1.6064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085369418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:23 Heat of formation + Delta-G solvation = -19.805064 kcal Electronic energy + Delta-G solvation = -20856.775327 eV Core-core repulsion = 17798.817065 eV Total energy + Delta-G solvation = -3057.958262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.97676 -37.34294 -36.57527 -35.04368 -32.76823 -32.49946 -30.64782 -29.40129 -27.11128 -26.21124 -23.81623 -23.05797 -20.77003 -20.41482 -18.01454 -17.40503 -17.06631 -16.21359 -16.05427 -15.73260 -14.67456 -14.50442 -14.43623 -14.05383 -13.76452 -13.43592 -13.19862 -12.78301 -12.57195 -12.29358 -12.22602 -12.04112 -11.61048 -11.51131 -11.17194 -11.10777 -11.03411 -10.93558 -10.82144 -10.69182 -10.52481 -10.44988 -10.07794 -9.58732 -8.81063 -8.53754 -8.40735 -7.64355 -6.02218 -4.06852 2.89435 2.98050 3.32600 3.37846 3.39348 3.49332 3.86342 4.32785 4.45138 4.47746 4.68818 4.72972 5.02609 5.19277 5.29375 5.34522 5.38472 5.40574 5.51089 5.51287 5.62519 5.67537 5.70435 5.82823 5.97809 6.04919 6.13061 6.19254 6.30557 6.48137 7.11638 7.24891 7.49894 7.56952 7.60012 7.74306 7.94355 8.25798 8.48685 8.92856 9.16826 9.58466 11.05556 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.006816 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.092596 B = 4106.786635 C = 5014.474581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.221 3.779 3 C -0.057 4.057 4 C 0.129 3.871 5 N -0.584 5.584 6 C 0.250 3.750 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.894 5.894 11 Si 0.893 3.107 12 H -0.287 1.287 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.537 3.463 16 O -0.543 6.543 17 C -0.119 4.119 18 H 0.089 0.911 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.158 4.158 22 C 0.103 3.897 23 H 0.084 0.916 24 N -0.840 5.840 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.338 0.662 39 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.935 -2.981 -14.753 15.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.097 4.097 3 C -0.099 4.099 4 C 0.003 3.997 5 N -0.314 5.314 6 C 0.131 3.869 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.213 1.213 13 H -0.202 1.202 14 H -0.203 1.203 15 C 0.323 3.677 16 O -0.421 6.421 17 C -0.141 4.141 18 H 0.107 0.893 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.198 4.198 22 C -0.009 4.009 23 H 0.103 0.897 24 N -0.370 5.370 25 H 0.146 0.854 26 H 0.120 0.880 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.150 0.850 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.414 -2.665 -13.956 15.205 hybrid contribution 1.094 0.685 -0.238 1.313 sum -4.320 -1.980 -14.195 14.969 Atomic orbital electron populations 1.81171 1.13129 1.09068 1.09865 1.29265 0.95224 0.92766 0.92405 1.20094 0.80927 1.02130 1.06731 1.21155 0.82736 0.92736 1.03103 1.47938 1.04152 1.70771 1.08496 1.19257 0.94180 0.97007 0.76428 1.21428 1.40504 0.92664 1.01902 0.92395 1.24913 0.95359 0.96782 0.96917 1.69917 1.41410 1.28967 1.12955 0.86646 0.78416 0.84714 0.78158 1.21305 1.20227 1.20276 1.19745 0.87048 0.75821 0.85078 1.90647 1.14664 1.50163 1.86611 1.22177 1.00557 0.96587 0.94754 0.89285 1.22398 1.01634 0.98150 0.93281 1.22410 1.01433 0.94727 0.97277 1.23248 1.00654 0.97585 0.98289 1.21937 0.98699 0.91344 0.88943 0.89747 1.58869 1.24194 1.07252 1.46711 0.85351 0.87992 0.90851 0.89772 0.93931 0.95112 0.92734 0.91518 0.89331 0.91638 0.91646 0.91804 0.91443 0.84972 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.34 18.54 42.15 0.78 -6.56 16 2 C 0.22 3.08 15.43 -20.76 -0.32 2.76 16 3 C -0.06 -0.75 5.85 -29.52 -0.17 -0.92 16 4 C 0.13 1.87 5.03 -4.05 -0.02 1.85 16 5 N -0.58 -10.87 2.47 -175.06 -0.43 -11.31 16 6 C 0.25 6.03 5.16 -5.19 -0.03 6.01 16 7 C -0.53 -13.79 9.08 -34.44 -0.31 -14.10 16 8 H 0.06 1.47 7.22 -52.48 -0.38 1.09 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 11 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.54 9.77 4.96 -10.99 -0.05 9.71 16 16 O -0.54 -12.30 14.87 5.56 0.08 -12.21 16 17 C -0.12 -1.56 2.40 -90.65 -0.22 -1.78 16 18 H 0.09 1.01 5.59 -51.93 -0.29 0.72 16 19 C -0.12 -1.45 6.30 -25.07 -0.16 -1.61 16 20 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 21 C -0.16 -1.55 6.51 -25.07 -0.16 -1.72 16 22 C 0.10 1.16 3.64 -66.60 -0.24 0.91 16 23 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 24 N -0.84 -10.55 8.14 -3.72 -0.03 -10.58 16 25 H 0.13 1.92 7.23 -51.93 -0.38 1.54 16 26 H 0.10 1.13 7.10 -51.93 -0.37 0.76 16 27 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 28 H 0.08 1.25 7.83 -51.93 -0.41 0.84 16 29 H 0.04 1.18 7.50 -51.93 -0.39 0.79 16 30 H 0.03 0.77 7.86 -51.93 -0.41 0.36 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.34 6.81 -51.93 -0.35 0.99 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 38 H 0.34 3.42 9.08 -39.29 -0.36 3.06 16 39 H 0.35 5.14 7.74 -39.29 -0.30 4.84 16 LS Contribution 322.14 15.07 4.85 4.85 Total: -1.00 -31.30 322.14 -6.61 -37.91 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.62 Total: 5.40 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.96 Total: 1.38 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 1.06 Total: -53.41 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.30 -6.61 -37.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085369418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.102 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds