Wall clock time and date at job start Mon Mar 30 2020 04:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47106 * 357.72506 * 3 2 1 5 5 N 1.46495 * 109.47093 * 184.94337 * 4 3 2 6 6 C 1.46505 * 119.99988 * 94.92600 * 5 4 3 7 7 C 1.50700 * 109.47409 * 269.99938 * 6 5 4 8 8 H 1.08005 * 119.99621 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00303 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99680 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46795 * 180.02562 * 11 9 7 13 13 H 1.48497 * 109.47132 * 300.00331 * 11 9 7 14 14 H 1.48494 * 109.47082 * 60.00450 * 11 9 7 15 15 C 1.34777 * 120.00404 * 274.93289 * 5 4 3 16 16 O 1.21278 * 120.00275 * 174.77337 * 15 5 4 17 17 C 1.50700 * 119.99667 * 354.76538 * 15 5 4 18 18 H 1.09004 * 110.01499 * 33.47390 * 17 15 5 19 19 C 1.54272 * 110.03145 * 154.86083 * 17 15 5 20 20 C 1.54891 * 104.19189 * 142.89987 * 19 17 15 21 21 C 1.54888 * 102.75125 * 322.05535 * 20 19 17 22 22 C 1.53867 * 110.03747 * 272.02918 * 17 15 5 23 23 H 1.09005 * 110.03398 * 121.43073 * 22 17 15 24 24 N 1.46904 * 110.03277 * 0.02562 * 22 17 15 25 25 H 1.08999 * 109.46993 * 237.72276 * 3 2 1 26 26 H 1.09004 * 109.46815 * 117.72023 * 3 2 1 27 27 H 1.08996 * 109.47106 * 64.94311 * 4 3 2 28 28 H 1.08995 * 109.47120 * 304.94238 * 4 3 2 29 29 H 1.09004 * 109.46815 * 150.00242 * 6 5 4 30 30 H 1.08997 * 109.46854 * 30.00669 * 6 5 4 31 31 H 0.97000 * 120.00012 * 179.97438 * 10 9 7 32 32 H 1.09002 * 110.48667 * 261.57426 * 19 17 15 33 33 H 1.08997 * 110.48418 * 24.22358 * 19 17 15 34 34 H 1.08999 * 110.75958 * 80.37767 * 20 19 17 35 35 H 1.09000 * 110.75000 * 203.56306 * 20 19 17 36 36 H 1.08991 * 110.48666 * 156.62188 * 21 20 19 37 37 H 1.09001 * 110.48885 * 279.27052 * 21 20 19 38 38 H 1.00897 * 111.00017 * 174.75809 * 24 22 17 39 39 H 1.00897 * 110.99602 * 298.71286 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.4404 0.0573 5 7 4.5787 -1.4368 0.1762 6 6 5.2063 -1.5302 1.4968 7 6 5.4093 -0.1455 2.0557 8 1 5.1013 0.7179 1.4845 9 6 5.9873 0.0193 3.2965 10 7 6.3620 -1.0321 3.9922 11 14 6.2383 1.7357 3.9895 12 1 6.8746 1.6409 5.3280 13 1 7.1159 2.5138 3.0788 14 1 4.9245 2.4168 4.1126 15 6 5.3448 -1.3473 -0.9290 16 8 6.5491 -1.2487 -0.8258 17 6 4.7048 -1.3700 -2.2932 18 1 3.7289 -0.8857 -2.2555 19 6 5.6117 -0.6525 -3.3144 20 6 5.4522 -1.4822 -4.6125 21 6 5.3769 -2.9356 -4.0823 22 6 4.5555 -2.8214 -2.7815 23 1 3.5070 -3.0422 -2.9814 24 7 5.0813 -3.7489 -1.7708 25 1 2.9711 0.5496 0.8689 26 1 2.9711 0.4789 -0.9098 27 1 2.8296 -1.9648 -0.8536 28 1 2.6851 -1.9455 0.9203 29 1 6.1706 -2.0304 1.4062 30 1 4.5622 -2.1012 2.1655 31 1 6.7690 -0.9162 4.8650 32 1 5.2729 0.3715 -3.4721 33 1 6.6485 -0.6650 -2.9785 34 1 4.5332 -1.2127 -5.1329 35 1 6.3162 -1.3501 -5.2639 36 1 4.8669 -3.5776 -4.8004 37 1 6.3759 -3.3167 -3.8705 38 1 4.9136 -4.7074 -2.0377 39 1 6.0633 -3.5858 -1.6064 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085369418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:23 Heat of formation + Delta-G solvation = -41.077725 kcal Electronic energy + Delta-G solvation = -20857.697779 eV Core-core repulsion = 17798.817065 eV Total energy + Delta-G solvation = -3058.880714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24474 -38.49094 -37.82622 -36.53490 -34.74239 -33.42842 -32.07018 -30.57932 -28.75339 -27.22121 -25.09316 -24.87353 -21.67028 -21.58956 -19.28513 -18.88118 -18.18670 -17.97008 -17.23192 -17.10434 -16.37498 -15.61023 -15.52899 -15.30186 -15.17154 -14.61463 -14.29277 -14.07504 -14.02546 -13.69535 -13.44166 -13.35793 -13.16835 -12.91038 -12.75485 -12.50473 -12.34397 -12.13158 -12.03638 -11.86194 -11.76074 -11.64311 -11.52747 -11.40770 -10.51976 -10.31873 -9.48940 -9.28445 -8.10365 -6.22793 1.43599 1.46682 1.52760 1.73174 1.85378 2.11505 2.39131 2.54816 3.17455 3.20628 3.52327 3.75345 3.83809 4.01391 4.12311 4.23209 4.35521 4.53180 4.54733 4.56635 4.63887 4.71338 4.83792 4.89776 5.06260 5.13634 5.18826 5.24530 5.25590 5.35869 5.44583 5.54494 5.73367 6.00677 6.20650 6.25420 6.61966 6.64478 6.86371 7.00593 7.43252 7.72495 8.96066 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.006816 C = 0.005582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.092596 B = 4106.786635 C = 5014.474581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.247 3.753 3 C -0.046 4.046 4 C 0.126 3.874 5 N -0.586 5.586 6 C 0.268 3.732 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.956 3.044 12 H -0.288 1.288 13 H -0.278 1.278 14 H -0.260 1.260 15 C 0.534 3.466 16 O -0.596 6.596 17 C -0.112 4.112 18 H 0.118 0.882 19 C -0.120 4.120 20 C -0.112 4.112 21 C -0.153 4.153 22 C 0.103 3.897 23 H 0.112 0.888 24 N -0.853 5.853 25 H 0.112 0.888 26 H 0.131 0.869 27 H 0.106 0.894 28 H 0.078 0.922 29 H -0.004 1.004 30 H 0.017 0.983 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.351 0.649 39 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 -2.104 -16.889 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.070 4.070 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.314 5.314 6 C 0.146 3.854 7 C -0.569 4.569 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.781 3.219 12 H -0.214 1.214 13 H -0.203 1.203 14 H -0.185 1.185 15 C 0.323 3.677 16 O -0.477 6.477 17 C -0.134 4.134 18 H 0.136 0.864 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.193 4.193 22 C -0.009 4.009 23 H 0.130 0.870 24 N -0.383 5.383 25 H 0.130 0.870 26 H 0.149 0.851 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.014 0.986 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.165 0.835 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.327 -1.792 -16.126 17.803 hybrid contribution 1.702 0.360 0.413 1.788 sum -5.625 -1.432 -15.713 16.751 Atomic orbital electron populations 1.81215 1.14115 1.10145 1.11121 1.29147 0.94881 0.91682 0.91254 1.19973 0.80238 1.01004 1.07487 1.21358 0.79882 0.94097 1.04523 1.47818 1.06040 1.70878 1.06709 1.18662 0.92136 0.95497 0.79062 1.21798 1.39563 0.93669 1.01835 0.91669 1.25769 0.95341 1.00436 0.97590 1.70053 1.42657 1.31133 1.13335 0.85641 0.78877 0.80218 0.77127 1.21353 1.20315 1.18476 1.20650 0.86427 0.74035 0.86585 1.90625 1.17283 1.52275 1.87552 1.22275 1.01318 0.98723 0.91076 0.86446 1.22402 0.99363 0.99543 0.94496 1.22402 1.02900 0.93761 0.95911 1.23198 0.99864 0.98190 0.98022 1.22097 1.00302 0.89526 0.88984 0.87040 1.58882 1.23037 1.08618 1.47806 0.86980 0.85084 0.87580 0.90391 0.98629 0.96465 0.92865 0.90172 0.92953 0.89125 0.91225 0.89366 0.93057 0.83514 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.65 18.54 20.01 0.37 -14.28 16 2 C 0.25 6.23 15.43 89.44 1.38 7.61 16 3 C -0.05 -1.07 5.85 28.79 0.17 -0.91 16 4 C 0.13 3.39 5.03 86.38 0.43 3.83 16 5 N -0.59 -21.72 2.47 -826.17 -2.04 -23.76 16 6 C 0.27 13.39 5.16 85.63 0.44 13.83 16 7 C -0.53 -28.22 9.08 25.60 0.23 -27.99 16 8 H 0.07 3.30 7.22 -2.91 -0.02 3.28 16 9 C 0.01 0.39 5.46 84.65 0.46 0.85 16 10 N -0.93 -55.18 13.29 21.45 0.28 -54.90 16 11 Si 0.96 43.51 29.54 68.60 2.03 45.54 16 12 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 15 C 0.53 19.34 4.96 87.66 0.43 19.77 16 16 O -0.60 -28.08 14.87 -3.02 -0.04 -28.12 16 17 C -0.11 -2.67 2.40 -10.82 -0.03 -2.70 16 18 H 0.12 2.12 5.59 -2.38 -0.01 2.11 16 19 C -0.12 -2.75 6.30 31.67 0.20 -2.55 16 20 C -0.11 -1.81 6.91 31.89 0.22 -1.59 16 21 C -0.15 -2.57 6.51 31.67 0.21 -2.36 16 22 C 0.10 2.00 3.64 45.64 0.17 2.17 16 23 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 24 N -0.85 -20.61 8.14 -165.67 -1.35 -21.95 16 25 H 0.11 3.14 7.23 -2.39 -0.02 3.12 16 26 H 0.13 2.36 7.10 -2.38 -0.02 2.34 16 27 H 0.11 2.19 6.34 -2.39 -0.02 2.18 16 28 H 0.08 2.21 7.83 -2.39 -0.02 2.20 16 29 H 0.00 -0.26 7.50 -2.38 -0.02 -0.28 16 30 H 0.02 0.90 7.86 -2.39 -0.02 0.88 16 31 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.60 6.81 -2.39 -0.02 1.59 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.03 7.92 -2.39 -0.02 1.01 16 38 H 0.35 6.63 9.08 -89.70 -0.81 5.82 16 39 H 0.33 10.09 7.74 -89.70 -0.69 9.39 16 Total: -1.00 -71.14 322.14 3.14 -68.00 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.43 Total: 19.51 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 4.32 Total: 9.98 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -2.73 Total: -114.90 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.04 Total: -28.12 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.14 3.14 -68.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085369418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.920 kcal (2) G-P(sol) polarization free energy of solvation -71.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds