Wall clock time and date at job start Mon Mar 30 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99825 * 2 1 4 4 C 1.52999 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47582 * 63.71829 * 4 3 2 6 6 C 1.46898 * 110.99922 * 72.04065 * 5 4 3 7 7 C 1.50698 * 109.47041 * 64.06246 * 6 5 4 8 8 H 1.08002 * 120.00007 * 4.97171 * 7 6 5 9 9 C 1.37882 * 120.00181 * 184.97336 * 7 6 5 10 10 N 1.31517 * 119.99817 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00111 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47498 * 59.99449 * 11 9 7 13 13 H 1.48504 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47124 * 299.99817 * 11 9 7 15 15 C 1.39001 * 111.00537 * 195.99632 * 5 4 3 16 16 N 1.32680 * 120.08882 * 341.22148 * 15 5 4 17 17 C 1.32220 * 119.90807 * 180.02562 * 16 15 5 18 18 C 1.50706 * 119.94603 * 179.97438 * 17 16 15 19 19 C 1.38208 * 120.10817 * 359.97438 * 17 16 15 20 20 N 1.32246 * 120.18435 * 359.75086 * 19 17 16 21 21 C 1.31941 * 120.08700 * 0.50878 * 20 19 17 22 22 C 1.50704 * 120.05354 * 179.76733 * 21 20 19 23 23 H 1.08998 * 109.46941 * 299.99806 * 1 2 3 24 24 H 1.08995 * 109.47369 * 59.99785 * 1 2 3 25 25 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47329 * 60.00296 * 3 2 1 27 27 H 1.09000 * 109.46636 * 300.00237 * 3 2 1 28 28 H 1.09005 * 109.46970 * 303.72511 * 4 3 2 29 29 H 1.08998 * 109.47264 * 183.72575 * 4 3 2 30 30 H 1.09001 * 109.47442 * 184.06151 * 6 5 4 31 31 H 1.08997 * 109.47299 * 304.06225 * 6 5 4 32 32 H 0.96991 * 119.99795 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.46934 * 90.00034 * 18 17 16 34 34 H 1.09003 * 109.47089 * 209.99662 * 18 17 16 35 35 H 1.08999 * 109.46851 * 329.99395 * 18 17 16 36 36 H 1.07995 * 119.90759 * 180.02562 * 19 17 16 37 37 H 1.08994 * 109.47145 * 269.53487 * 22 21 20 38 38 H 1.08999 * 109.46561 * 29.53364 * 22 21 20 39 39 H 1.08997 * 109.47162 * 149.52511 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9747 0.5351 -1.2427 6 6 3.8218 1.4377 -2.3915 7 6 4.7301 2.6279 -2.2196 8 1 5.4161 2.6678 -1.3864 9 6 4.6853 3.6660 -3.1260 10 7 3.8503 3.6172 -4.1409 11 14 5.8116 5.1409 -2.9132 12 1 7.2268 4.6926 -2.9508 13 1 5.5697 6.1109 -4.0113 14 1 5.5332 5.7921 -1.6079 15 6 5.2856 0.0857 -1.1333 16 7 6.0802 0.5757 -0.1905 17 6 7.3266 0.1461 -0.0899 18 6 8.2301 0.7025 0.9803 19 6 7.8023 -0.8123 -0.9647 20 7 7.0121 -1.3074 -1.9024 21 6 5.7685 -0.8804 -2.0128 22 6 4.8703 -1.4413 -3.0851 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8529 0.5872 0.8539 29 1 3.9786 2.1784 0.0661 30 1 4.0859 0.9085 -3.3071 31 1 2.7875 1.7758 -2.4528 32 1 3.8190 4.3472 -4.7787 33 1 8.1410 0.0968 1.8821 34 1 9.2623 0.6836 0.6304 35 1 7.9406 1.7297 1.2023 36 1 8.8207 -1.1612 -0.8794 37 1 4.9579 -0.8347 -3.9864 38 1 5.1661 -2.4666 -3.3070 39 1 3.8374 -1.4284 -2.7372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088057699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:49 Heat of formation + Delta-G solvation = 7.024834 kcal Electronic energy + Delta-G solvation = -20971.446117 eV Core-core repulsion = 17914.651287 eV Total energy + Delta-G solvation = -3056.794830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67730 -37.83449 -36.41865 -34.28592 -32.74851 -31.55299 -29.87417 -28.95625 -26.86013 -25.84694 -25.14334 -23.34522 -23.09851 -21.13551 -20.07245 -17.30128 -16.79440 -16.08059 -15.89921 -15.39112 -15.22958 -14.72343 -14.44959 -14.33117 -13.42802 -13.26660 -13.01008 -12.85051 -12.38185 -12.18117 -11.92449 -11.76627 -11.69776 -11.54451 -11.37345 -11.07262 -11.00282 -10.85225 -10.53668 -10.36142 -10.24636 -10.13491 -9.84012 -9.19482 -8.56124 -8.53963 -8.39987 -7.35451 -6.15532 -4.23140 1.48282 1.84838 3.23320 3.27998 3.31650 4.16952 4.27853 4.33000 4.48749 4.78102 4.82666 5.17516 5.21845 5.35953 5.49619 5.60341 5.67371 5.75488 5.78442 5.82515 5.84411 5.89625 5.97500 6.05245 6.16265 6.25018 6.36178 6.45327 6.56032 6.68919 6.85660 7.13197 7.35341 7.50875 7.69203 7.80096 7.97815 8.00034 8.20916 8.54424 8.86071 9.43677 10.90618 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.010277 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.876791 B = 2723.952435 C = 4173.556183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.066 3.934 4 C 0.073 3.927 5 N -0.471 5.471 6 C 0.189 3.811 7 C -0.556 4.556 8 H 0.067 0.933 9 C 0.069 3.931 10 N -0.888 5.888 11 Si 0.891 3.109 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.317 3.683 16 N -0.475 5.475 17 C 0.087 3.913 18 C -0.095 4.095 19 C 0.001 3.999 20 N -0.431 5.431 21 C 0.073 3.927 22 C -0.088 4.088 23 H 0.032 0.968 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.429 -6.211 7.612 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.011 4.011 4 C -0.055 4.055 5 N -0.189 5.189 6 C 0.067 3.933 7 C -0.595 4.595 8 H 0.085 0.915 9 C -0.134 4.134 10 N -0.526 5.526 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.082 3.918 16 N -0.195 5.195 17 C -0.054 4.054 18 C -0.153 4.153 19 C -0.158 4.158 20 N -0.145 5.145 21 C -0.073 4.073 22 C -0.146 4.146 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.172 0.828 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.114 -6.660 7.351 9.920 hybrid contribution 0.911 1.925 0.163 2.136 sum 1.025 -4.735 7.514 8.940 Atomic orbital electron populations 1.22650 0.82526 1.01891 0.99420 1.87970 1.18272 1.28305 1.95263 1.22673 0.94046 0.84320 1.00033 1.21894 0.92037 1.00153 0.91408 1.59966 1.12489 1.39328 1.07137 1.20026 0.98387 0.88655 0.86265 1.21798 1.21978 1.04061 1.11638 0.91490 1.24909 0.95350 0.98204 0.94946 1.69919 1.36266 1.32841 1.13567 0.86666 0.81299 0.82369 0.77826 1.20320 1.21098 1.20069 1.20618 0.89832 0.91200 0.90139 1.68423 1.03872 1.23576 1.23652 1.21977 0.92160 0.94445 0.96807 1.20599 0.97038 1.01883 0.95814 1.23074 1.00441 0.98142 0.94134 1.68076 1.03572 1.24402 1.18491 1.21707 0.91940 0.95440 0.98167 1.20585 0.98324 0.99982 0.95726 0.94975 0.94292 0.90349 0.93741 0.92223 0.91527 0.90275 0.94124 0.93320 0.92583 0.90778 0.90887 0.90604 0.82756 0.90426 0.91728 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.38 -6.72 10.63 -35.23 -0.37 -7.09 16 3 C 0.07 1.18 6.08 37.16 0.23 1.41 16 4 C 0.07 1.46 4.45 -3.83 -0.02 1.45 16 5 N -0.47 -10.22 3.73 -174.44 -0.65 -10.87 16 6 C 0.19 4.65 4.74 -4.98 -0.02 4.62 16 7 C -0.56 -14.91 7.52 -34.44 -0.26 -15.17 16 8 H 0.07 1.84 6.16 -52.49 -0.32 1.52 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 10 N -0.89 -25.13 13.29 55.43 0.74 -24.40 16 11 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.32 6.89 4.93 -154.72 -0.76 6.13 16 16 N -0.48 -9.92 8.24 -8.48 -0.07 -9.99 16 17 C 0.09 1.56 6.78 -82.43 -0.56 1.00 16 18 C -0.10 -1.25 10.19 36.01 0.37 -0.88 16 19 C 0.00 0.02 10.86 -17.38 -0.19 -0.17 16 20 N -0.43 -8.45 10.41 -9.12 -0.09 -8.55 16 21 C 0.07 1.51 6.71 -82.15 -0.55 0.96 16 22 C -0.09 -1.60 8.72 36.01 0.31 -1.29 16 23 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 1.15 6.56 -51.93 -0.34 0.81 16 28 H 0.07 1.31 7.68 -51.93 -0.40 0.91 16 29 H 0.08 1.73 6.57 -51.93 -0.34 1.38 16 30 H 0.04 1.05 6.12 -51.93 -0.32 0.73 16 31 H 0.05 1.26 6.50 -51.93 -0.34 0.92 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 1.58 7.47 -51.93 -0.39 1.19 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -30.49 320.52 -6.85 -37.35 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.77 Total: 0.93 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.44 Total: 1.40 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.08 Total: -53.81 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.37 Total: -7.09 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.49 -6.85 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088057699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.371 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds