Wall clock time and date at job start Mon Mar 30 2020 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99825 * 2 1 4 4 C 1.52999 * 109.47248 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47582 * 63.71829 * 4 3 2 6 6 C 1.46898 * 110.99922 * 72.04065 * 5 4 3 7 7 C 1.50698 * 109.47041 * 64.06246 * 6 5 4 8 8 H 1.08002 * 120.00007 * 4.97171 * 7 6 5 9 9 C 1.37882 * 120.00181 * 184.97336 * 7 6 5 10 10 N 1.31517 * 119.99817 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00111 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47498 * 59.99449 * 11 9 7 13 13 H 1.48504 * 109.47290 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47124 * 299.99817 * 11 9 7 15 15 C 1.39001 * 111.00537 * 195.99632 * 5 4 3 16 16 N 1.32680 * 120.08882 * 341.22148 * 15 5 4 17 17 C 1.32220 * 119.90807 * 180.02562 * 16 15 5 18 18 C 1.50706 * 119.94603 * 179.97438 * 17 16 15 19 19 C 1.38208 * 120.10817 * 359.97438 * 17 16 15 20 20 N 1.32246 * 120.18435 * 359.75086 * 19 17 16 21 21 C 1.31941 * 120.08700 * 0.50878 * 20 19 17 22 22 C 1.50704 * 120.05354 * 179.76733 * 21 20 19 23 23 H 1.08998 * 109.46941 * 299.99806 * 1 2 3 24 24 H 1.08995 * 109.47369 * 59.99785 * 1 2 3 25 25 H 1.08998 * 109.46798 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47329 * 60.00296 * 3 2 1 27 27 H 1.09000 * 109.46636 * 300.00237 * 3 2 1 28 28 H 1.09005 * 109.46970 * 303.72511 * 4 3 2 29 29 H 1.08998 * 109.47264 * 183.72575 * 4 3 2 30 30 H 1.09001 * 109.47442 * 184.06151 * 6 5 4 31 31 H 1.08997 * 109.47299 * 304.06225 * 6 5 4 32 32 H 0.96991 * 119.99795 * 180.02562 * 10 9 7 33 33 H 1.08998 * 109.46934 * 90.00034 * 18 17 16 34 34 H 1.09003 * 109.47089 * 209.99662 * 18 17 16 35 35 H 1.08999 * 109.46851 * 329.99395 * 18 17 16 36 36 H 1.07995 * 119.90759 * 180.02562 * 19 17 16 37 37 H 1.08994 * 109.47145 * 269.53487 * 22 21 20 38 38 H 1.08999 * 109.46561 * 29.53364 * 22 21 20 39 39 H 1.08997 * 109.47162 * 149.52511 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9747 0.5351 -1.2427 6 6 3.8218 1.4377 -2.3915 7 6 4.7301 2.6279 -2.2196 8 1 5.4161 2.6678 -1.3864 9 6 4.6853 3.6660 -3.1260 10 7 3.8503 3.6172 -4.1409 11 14 5.8116 5.1409 -2.9132 12 1 7.2268 4.6926 -2.9508 13 1 5.5697 6.1109 -4.0113 14 1 5.5332 5.7921 -1.6079 15 6 5.2856 0.0857 -1.1333 16 7 6.0802 0.5757 -0.1905 17 6 7.3266 0.1461 -0.0899 18 6 8.2301 0.7025 0.9803 19 6 7.8023 -0.8123 -0.9647 20 7 7.0121 -1.3074 -1.9024 21 6 5.7685 -0.8804 -2.0128 22 6 4.8703 -1.4413 -3.0851 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8529 0.5872 0.8539 29 1 3.9786 2.1784 0.0661 30 1 4.0859 0.9085 -3.3071 31 1 2.7875 1.7758 -2.4528 32 1 3.8190 4.3472 -4.7787 33 1 8.1410 0.0968 1.8821 34 1 9.2623 0.6836 0.6304 35 1 7.9406 1.7297 1.2023 36 1 8.8207 -1.1612 -0.8794 37 1 4.9579 -0.8347 -3.9864 38 1 5.1661 -2.4666 -3.3070 39 1 3.8374 -1.4284 -2.7372 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088057699.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:48 Heat of formation + Delta-G solvation = -13.476361 kcal Electronic energy + Delta-G solvation = -20972.335116 eV Core-core repulsion = 17914.651287 eV Total energy + Delta-G solvation = -3057.683829 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18069 -39.31753 -37.90804 -35.72692 -34.77234 -33.06425 -31.23526 -30.50061 -28.69298 -27.04937 -26.51374 -25.16084 -24.65044 -22.57410 -21.74072 -18.88080 -18.66085 -17.64205 -17.42991 -16.88362 -16.76658 -16.21495 -16.10730 -15.63508 -15.03110 -14.75999 -14.52405 -14.27945 -13.84600 -13.54247 -13.28843 -13.21734 -13.08658 -13.05037 -12.98396 -12.79615 -12.59206 -12.41441 -12.28800 -12.12074 -11.87117 -11.74759 -11.73550 -10.66562 -10.49720 -10.16188 -9.89804 -9.00300 -8.22743 -6.38170 0.00951 0.33329 1.31947 1.32427 1.40715 2.32260 2.65483 2.97288 3.00168 3.06047 3.40408 3.42202 3.77154 4.10074 4.19722 4.25508 4.34179 4.44360 4.55525 4.60072 4.62549 4.76547 4.78911 4.81045 4.85304 4.89324 4.97321 4.98315 5.06025 5.12578 5.24596 5.31972 5.53947 5.69482 5.81599 6.02229 6.32756 6.39466 6.57589 6.78250 7.04672 7.31332 8.81095 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.010493 B = 0.010277 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.876791 B = 2723.952435 C = 4173.556183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.075 3.925 4 C 0.079 3.921 5 N -0.469 5.469 6 C 0.208 3.792 7 C -0.559 4.559 8 H 0.058 0.942 9 C 0.022 3.978 10 N -0.917 5.917 11 Si 0.948 3.052 12 H -0.280 1.280 13 H -0.278 1.278 14 H -0.268 1.268 15 C 0.286 3.714 16 N -0.496 5.496 17 C 0.079 3.921 18 C -0.090 4.090 19 C 0.010 3.990 20 N -0.442 5.442 21 C 0.049 3.951 22 C -0.079 4.079 23 H 0.052 0.948 24 H 0.037 0.963 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.065 0.935 36 H 0.200 0.800 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -6.459 8.986 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.002 4.002 4 C -0.048 4.048 5 N -0.187 5.187 6 C 0.084 3.916 7 C -0.598 4.598 8 H 0.076 0.924 9 C -0.178 4.178 10 N -0.556 5.556 11 Si 0.774 3.226 12 H -0.206 1.206 13 H -0.203 1.203 14 H -0.193 1.193 15 C 0.052 3.948 16 N -0.216 5.216 17 C -0.063 4.063 18 C -0.148 4.148 19 C -0.150 4.150 20 N -0.157 5.157 21 C -0.095 4.095 22 C -0.137 4.137 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.217 0.783 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.532 -6.920 8.726 11.242 hybrid contribution 0.564 1.920 -0.174 2.009 sum 2.095 -5.000 8.552 10.126 Atomic orbital electron populations 1.22883 0.80206 1.03561 1.00345 1.87919 1.20819 1.27934 1.95433 1.22510 0.92642 0.84738 1.00303 1.21815 0.93537 0.98656 0.90824 1.59880 1.13490 1.38646 1.06699 1.19610 0.96678 0.88346 0.86946 1.21958 1.21907 1.04805 1.11107 0.92400 1.25630 0.96699 1.00724 0.94778 1.70015 1.37583 1.33694 1.14277 0.85757 0.79166 0.79508 0.78173 1.20569 1.20311 1.19290 1.20733 0.90088 0.92379 0.91593 1.68414 1.05290 1.24256 1.23633 1.22830 0.91573 0.94168 0.97773 1.20739 0.97484 1.01286 0.95311 1.23873 1.01822 0.96871 0.92477 1.68141 1.03314 1.24799 1.19415 1.21962 0.92846 0.95923 0.98752 1.20500 0.97782 1.00833 0.94616 0.92919 0.94430 0.88379 0.91052 0.94228 0.91312 0.92497 0.96008 0.95166 0.92454 0.88394 0.87682 0.91616 0.78285 0.91700 0.89555 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.40 -14.14 10.63 -148.98 -1.58 -15.72 16 3 C 0.07 2.70 6.08 71.98 0.44 3.14 16 4 C 0.08 3.26 4.45 86.30 0.38 3.65 16 5 N -0.47 -21.00 3.73 -705.79 -2.63 -23.63 16 6 C 0.21 10.65 4.74 85.56 0.41 11.05 16 7 C -0.56 -30.70 7.52 25.60 0.19 -30.51 16 8 H 0.06 3.25 6.16 -2.91 -0.02 3.23 16 9 C 0.02 1.23 5.46 84.66 0.46 1.70 16 10 N -0.92 -52.87 13.29 21.45 0.28 -52.59 16 11 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.29 12.57 4.93 133.02 0.66 13.23 16 16 N -0.50 -20.54 8.24 -180.73 -1.49 -22.03 16 17 C 0.08 2.64 6.78 42.50 0.29 2.93 16 18 C -0.09 -2.06 10.19 71.24 0.73 -1.34 16 19 C 0.01 0.31 10.86 84.62 0.92 1.23 16 20 N -0.44 -16.77 10.41 -182.77 -1.90 -18.67 16 21 C 0.05 2.01 6.71 42.80 0.29 2.30 16 22 C -0.08 -2.94 8.72 71.24 0.62 -2.32 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.04 1.58 6.56 -2.39 -0.02 1.56 16 28 H 0.07 2.75 7.68 -2.38 -0.02 2.73 16 29 H 0.06 2.56 6.57 -2.39 -0.02 2.55 16 30 H 0.02 1.19 6.12 -2.39 -0.01 1.17 16 31 H 0.03 1.64 6.50 -2.39 -0.02 1.63 16 32 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.74 8.08 -2.39 -0.02 1.72 16 35 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16 37 H 0.06 2.53 7.42 -2.39 -0.02 2.51 16 38 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.08 3.04 7.47 -2.39 -0.02 3.03 16 Total: -1.00 -66.69 320.52 2.37 -64.32 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 1.04 Total: 15.22 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 6.63 Total: 6.98 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -5.74 Total: -116.91 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.58 Total: -15.72 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -66.69 2.37 -64.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088057699.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.847 kcal (2) G-P(sol) polarization free energy of solvation -66.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds