Wall clock time and date at job start Mon Mar 30 2020 04:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47316 * 2 1 4 4 C 1.39683 * 126.06882 * 124.97427 * 3 2 1 5 5 C 1.38397 * 105.36075 * 180.02562 * 4 3 2 6 6 C 1.47161 * 126.88543 * 180.26498 * 5 4 3 7 7 O 1.21631 * 120.00068 * 173.14591 * 6 5 4 8 8 N 1.34775 * 120.00043 * 353.14016 * 6 5 4 9 9 C 1.46502 * 119.99909 * 354.47052 * 8 6 5 10 10 C 1.46495 * 120.00397 * 174.46377 * 8 6 5 11 11 C 1.50706 * 109.46940 * 90.00071 * 10 8 6 12 12 H 1.07995 * 119.99562 * 0.02562 * 11 10 8 13 13 C 1.37876 * 120.00027 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00135 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00038 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46893 * 89.99806 * 15 13 11 17 17 H 1.48498 * 109.46995 * 209.99813 * 15 13 11 18 18 H 1.48501 * 109.47315 * 329.99759 * 15 13 11 19 19 N 1.36603 * 106.23216 * 359.97438 * 5 4 3 20 20 C 1.46503 * 125.19146 * 179.97438 * 19 5 4 21 21 C 1.53001 * 109.47126 * 85.39558 * 20 19 5 22 22 N 1.28445 * 109.62136 * 0.02562 * 19 5 4 23 23 H 1.09006 * 109.46650 * 59.99955 * 1 2 3 24 24 H 1.08992 * 109.47455 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46957 * 300.00137 * 1 2 3 26 26 H 1.08995 * 109.46957 * 239.99863 * 2 1 3 27 27 H 1.09006 * 109.46650 * 120.00045 * 2 1 3 28 28 H 1.08004 * 127.31657 * 0.03288 * 4 3 2 29 29 H 1.09002 * 109.47224 * 84.17480 * 9 8 6 30 30 H 1.08996 * 109.47339 * 204.17732 * 9 8 6 31 31 H 1.09002 * 109.47119 * 324.18161 * 9 8 6 32 32 H 1.08998 * 109.47325 * 210.00728 * 10 8 6 33 33 H 1.09002 * 109.47336 * 330.00821 * 10 8 6 34 34 H 0.97000 * 120.00326 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47134 * 205.39638 * 20 19 5 36 36 H 1.09004 * 109.46941 * 325.39985 * 20 19 5 37 37 H 1.08995 * 109.47570 * 304.90985 * 21 20 19 38 38 H 1.09005 * 109.46537 * 64.91187 * 21 20 19 39 39 H 1.09007 * 109.47210 * 184.90411 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9167 1.9803 0.9252 5 6 3.0834 3.2945 0.5245 6 6 3.9278 4.3137 1.1678 7 8 4.0806 5.3986 0.6395 8 7 4.5317 4.0451 2.3423 9 6 4.2524 2.7868 3.0386 10 6 5.4675 5.0113 2.9227 11 6 4.7158 5.9647 3.8155 12 1 3.6479 5.8609 3.9385 13 6 5.3916 6.9687 4.4760 14 7 4.7357 7.8004 5.2555 15 14 7.2389 7.1477 4.2636 16 1 7.5203 8.0510 3.1190 17 1 7.8263 7.7196 5.5017 18 1 7.8385 5.8147 4.0013 19 7 2.3120 3.4541 -0.5916 20 6 2.1818 4.6963 -1.3573 21 6 3.3206 4.7899 -2.3748 22 7 1.7175 2.3493 -0.8666 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.3735 1.4913 1.7729 29 1 4.8895 1.9994 2.6358 30 1 4.4536 2.9080 4.1030 31 1 3.2062 2.5165 2.8951 32 1 6.2198 4.4822 3.5076 33 1 5.9552 5.5698 2.1237 34 1 5.2111 8.5070 5.7199 35 1 1.2257 4.7021 -1.8805 36 1 2.2300 5.5481 -0.6788 37 1 4.2767 4.6966 -1.8598 38 1 3.2216 3.9873 -3.1057 39 1 3.2747 5.7527 -2.8841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090137703.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:52 Heat of formation + Delta-G solvation = 51.240416 kcal Electronic energy + Delta-G solvation = -20516.840679 eV Core-core repulsion = 17461.963180 eV Total energy + Delta-G solvation = -3054.877499 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.39521 -38.80996 -35.64918 -34.68640 -32.93107 -32.58991 -30.92006 -28.93075 -28.22554 -26.39957 -24.60137 -23.29176 -22.65052 -21.54089 -20.20753 -18.35009 -17.01282 -16.72765 -16.15269 -15.86924 -15.12955 -14.63954 -14.59447 -14.10941 -14.01254 -13.78857 -13.52039 -13.13593 -12.60696 -12.51861 -12.39230 -12.14532 -11.95366 -11.78239 -11.52558 -11.46049 -11.19341 -11.10168 -10.92712 -10.59738 -10.22988 -10.20565 -9.60690 -9.29443 -8.82064 -8.69592 -8.62661 -7.80851 -6.11950 -4.11419 1.62741 2.60061 2.72721 3.26327 3.32229 3.33849 3.66240 3.80984 4.35941 4.55912 4.75749 4.96446 5.05841 5.08896 5.21296 5.27994 5.35191 5.37560 5.53944 5.59187 5.68860 5.70736 5.78029 5.80263 5.89327 5.90105 6.11872 6.15647 6.17658 6.19973 6.60384 6.69103 6.83790 6.98870 7.21097 7.54667 8.06000 8.29552 8.41449 8.77613 8.92193 9.47253 11.01385 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025409 B = 0.005254 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.720686 B = 5328.240420 C = 5935.971606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.017 3.983 4 C -0.211 4.211 5 C -0.017 4.017 6 C 0.576 3.424 7 O -0.537 6.537 8 N -0.578 5.578 9 C 0.066 3.934 10 C 0.219 3.781 11 C -0.530 4.530 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.896 5.896 15 Si 0.876 3.124 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.266 1.266 19 N -0.257 5.257 20 C 0.118 3.882 21 C -0.160 4.160 22 N -0.283 5.283 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.175 0.825 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.035 0.965 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.078 -14.353 -10.439 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.140 4.140 4 C -0.240 4.240 5 C -0.146 4.146 6 C 0.361 3.639 7 O -0.415 6.415 8 N -0.308 5.308 9 C -0.077 4.077 10 C 0.098 3.902 11 C -0.568 4.568 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.190 1.190 19 N -0.045 5.045 20 C -0.002 4.002 21 C -0.218 4.218 22 N -0.116 5.116 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.192 0.808 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.595 -13.242 -11.609 18.200 hybrid contribution 1.376 0.167 0.791 1.595 sum -3.219 -13.076 -10.818 17.273 Atomic orbital electron populations 1.21709 0.94852 1.01319 1.02474 1.19810 0.95956 0.88728 1.02688 1.21957 1.00801 0.96485 0.94732 1.22891 1.04434 0.93053 1.03586 1.21712 1.02411 0.96833 0.93653 1.16882 0.80013 0.85361 0.81601 1.90764 1.62548 1.23544 1.64605 1.47518 1.43986 1.19851 1.19475 1.22320 1.01093 0.85620 0.98651 1.19752 0.88357 0.87966 0.94092 1.21297 0.96656 1.12711 1.26153 0.90676 1.24846 0.98298 0.95121 0.94639 1.69892 1.36108 1.17586 1.29849 0.86861 0.85825 0.79057 0.78004 1.19887 1.20989 1.19025 1.45735 1.30401 1.09215 1.19105 1.22072 1.00742 0.82297 0.95075 1.22055 0.98954 1.02562 0.98265 1.72989 1.20222 0.92814 1.25600 0.92278 0.92564 0.92684 0.90850 0.90207 0.80795 0.92982 0.90255 0.90463 0.94747 0.94458 0.92499 0.88744 0.86911 0.91179 0.92445 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.88 37.16 0.37 -1.02 16 2 C -0.03 -0.33 6.51 -27.89 -0.18 -0.51 16 3 C 0.02 0.24 6.49 -82.47 -0.54 -0.29 16 4 C -0.21 -3.13 8.80 -38.98 -0.34 -3.47 16 5 C -0.02 -0.31 6.79 -82.06 -0.56 -0.86 16 6 C 0.58 12.12 7.63 -12.64 -0.10 12.02 16 7 O -0.54 -12.76 13.99 5.25 0.07 -12.69 16 8 N -0.58 -11.98 2.86 -184.33 -0.53 -12.51 16 9 C 0.07 1.03 8.67 59.85 0.52 1.55 16 10 C 0.22 5.25 4.16 -5.19 -0.02 5.23 16 11 C -0.53 -15.06 9.94 -34.44 -0.34 -15.40 16 12 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 15 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 16 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 19 N -0.26 -4.27 3.35 -57.14 -0.19 -4.46 16 20 C 0.12 1.70 6.32 -4.04 -0.03 1.68 16 21 C -0.16 -2.09 10.14 37.16 0.38 -1.71 16 22 N -0.28 -4.46 11.87 33.64 0.40 -4.06 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 28 H 0.18 2.11 4.59 -52.48 -0.24 1.87 16 29 H 0.05 0.65 7.43 -51.93 -0.39 0.27 16 30 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 31 H 0.08 1.09 5.27 -51.93 -0.27 0.82 16 32 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 33 H 0.04 0.95 6.93 -51.93 -0.36 0.59 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.11 1.82 6.76 -51.93 -0.35 1.47 16 37 H 0.07 1.09 7.67 -51.93 -0.40 0.69 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -33.70 320.34 -6.02 -39.72 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.77 Total: 0.08 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -0.94 Total: -0.78 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.46 Total: -47.66 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.70 -6.02 -39.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090137703.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.958 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds