Wall clock time and date at job start Mon Mar 30 2020 04:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50691 * 109.47316 * 2 1 4 4 C 1.39683 * 126.06882 * 124.97427 * 3 2 1 5 5 C 1.38397 * 105.36075 * 180.02562 * 4 3 2 6 6 C 1.47161 * 126.88543 * 180.26498 * 5 4 3 7 7 O 1.21631 * 120.00068 * 173.14591 * 6 5 4 8 8 N 1.34775 * 120.00043 * 353.14016 * 6 5 4 9 9 C 1.46502 * 119.99909 * 354.47052 * 8 6 5 10 10 C 1.46495 * 120.00397 * 174.46377 * 8 6 5 11 11 C 1.50706 * 109.46940 * 90.00071 * 10 8 6 12 12 H 1.07995 * 119.99562 * 0.02562 * 11 10 8 13 13 C 1.37876 * 120.00027 * 179.97438 * 11 10 8 14 14 N 1.31512 * 120.00135 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 120.00038 * 0.02562 * 13 11 10 16 16 H 1.48504 * 109.46893 * 89.99806 * 15 13 11 17 17 H 1.48498 * 109.46995 * 209.99813 * 15 13 11 18 18 H 1.48501 * 109.47315 * 329.99759 * 15 13 11 19 19 N 1.36603 * 106.23216 * 359.97438 * 5 4 3 20 20 C 1.46503 * 125.19146 * 179.97438 * 19 5 4 21 21 C 1.53001 * 109.47126 * 85.39558 * 20 19 5 22 22 N 1.28445 * 109.62136 * 0.02562 * 19 5 4 23 23 H 1.09006 * 109.46650 * 59.99955 * 1 2 3 24 24 H 1.08992 * 109.47455 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46957 * 300.00137 * 1 2 3 26 26 H 1.08995 * 109.46957 * 239.99863 * 2 1 3 27 27 H 1.09006 * 109.46650 * 120.00045 * 2 1 3 28 28 H 1.08004 * 127.31657 * 0.03288 * 4 3 2 29 29 H 1.09002 * 109.47224 * 84.17480 * 9 8 6 30 30 H 1.08996 * 109.47339 * 204.17732 * 9 8 6 31 31 H 1.09002 * 109.47119 * 324.18161 * 9 8 6 32 32 H 1.08998 * 109.47325 * 210.00728 * 10 8 6 33 33 H 1.09002 * 109.47336 * 330.00821 * 10 8 6 34 34 H 0.97000 * 120.00326 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.47134 * 205.39638 * 20 19 5 36 36 H 1.09004 * 109.46941 * 325.39985 * 20 19 5 37 37 H 1.08995 * 109.47570 * 304.90985 * 21 20 19 38 38 H 1.09005 * 109.46537 * 64.91187 * 21 20 19 39 39 H 1.09007 * 109.47210 * 184.90411 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9167 1.9803 0.9252 5 6 3.0834 3.2945 0.5245 6 6 3.9278 4.3137 1.1678 7 8 4.0806 5.3986 0.6395 8 7 4.5317 4.0451 2.3423 9 6 4.2524 2.7868 3.0386 10 6 5.4675 5.0113 2.9227 11 6 4.7158 5.9647 3.8155 12 1 3.6479 5.8609 3.9385 13 6 5.3916 6.9687 4.4760 14 7 4.7357 7.8004 5.2555 15 14 7.2389 7.1477 4.2636 16 1 7.5203 8.0510 3.1190 17 1 7.8263 7.7196 5.5017 18 1 7.8385 5.8147 4.0013 19 7 2.3120 3.4541 -0.5916 20 6 2.1818 4.6963 -1.3573 21 6 3.3206 4.7899 -2.3748 22 7 1.7175 2.3493 -0.8666 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 3.3735 1.4913 1.7729 29 1 4.8895 1.9994 2.6358 30 1 4.4536 2.9080 4.1030 31 1 3.2062 2.5165 2.8951 32 1 6.2198 4.4822 3.5076 33 1 5.9552 5.5698 2.1237 34 1 5.2111 8.5070 5.7199 35 1 1.2257 4.7021 -1.8805 36 1 2.2300 5.5481 -0.6788 37 1 4.2767 4.6966 -1.8598 38 1 3.2216 3.9873 -3.1057 39 1 3.2747 5.7527 -2.8841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090137703.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:51 Heat of formation + Delta-G solvation = 28.491367 kcal Electronic energy + Delta-G solvation = -20517.827152 eV Core-core repulsion = 17461.963180 eV Total energy + Delta-G solvation = -3055.863972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.60676 -40.41726 -37.08367 -35.96491 -34.81096 -33.75216 -32.40117 -30.03829 -29.97702 -27.83464 -25.71519 -24.98736 -23.71358 -22.88326 -21.66353 -19.63403 -19.15888 -18.10759 -17.56561 -17.21986 -16.75626 -16.27132 -15.74115 -15.51588 -15.12959 -14.98222 -14.74084 -14.55423 -14.31228 -13.90018 -13.73159 -13.58561 -13.13560 -13.10307 -12.91682 -12.61700 -12.45978 -12.36182 -12.19199 -12.05052 -11.98741 -11.75618 -11.34373 -10.95065 -10.83144 -10.11265 -9.84966 -9.46211 -8.33964 -6.40048 0.28228 1.33282 1.38143 1.39128 1.46996 1.60529 2.16602 2.30927 2.32006 3.00412 3.44474 3.48184 3.91985 3.98609 4.10444 4.25378 4.32082 4.34521 4.50996 4.55677 4.60993 4.64453 4.68477 4.76784 4.85401 4.90026 4.91190 4.96957 5.07980 5.15761 5.29889 5.42218 5.43635 5.51538 5.59741 5.83718 6.20887 6.49530 6.61365 7.06428 7.16546 7.27704 8.83200 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025409 B = 0.005254 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.720686 B = 5328.240420 C = 5935.971606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.033 4.033 3 C 0.017 3.983 4 C -0.194 4.194 5 C -0.050 4.050 6 C 0.568 3.432 7 O -0.579 6.579 8 N -0.587 5.587 9 C 0.060 3.940 10 C 0.227 3.773 11 C -0.537 4.537 12 H 0.025 0.975 13 C 0.012 3.988 14 N -0.946 5.946 15 Si 0.949 3.051 16 H -0.276 1.276 17 H -0.276 1.276 18 H -0.234 1.234 19 N -0.266 5.266 20 C 0.113 3.887 21 C -0.150 4.150 22 N -0.291 5.291 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.203 0.797 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.269 0.731 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.079 -17.285 -11.070 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.222 4.222 5 C -0.178 4.178 6 C 0.356 3.644 7 O -0.460 6.460 8 N -0.317 5.317 9 C -0.082 4.082 10 C 0.105 3.895 11 C -0.576 4.576 12 H 0.043 0.957 13 C -0.186 4.186 14 N -0.586 5.586 15 Si 0.771 3.229 16 H -0.202 1.202 17 H -0.201 1.201 18 H -0.157 1.157 19 N -0.054 5.054 20 C -0.006 4.006 21 C -0.208 4.208 22 N -0.124 5.124 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.220 0.780 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.612 -16.230 -12.235 20.643 hybrid contribution 0.905 1.033 0.981 1.688 sum -2.706 -15.197 -11.254 19.103 Atomic orbital electron populations 1.21687 0.94528 1.02604 1.01284 1.20029 0.96145 0.86293 1.04658 1.22674 0.99873 0.97833 0.93585 1.23286 1.03479 0.91627 1.03855 1.21449 1.03901 0.97284 0.95162 1.17366 0.79903 0.85563 0.81570 1.90725 1.64031 1.25485 1.65768 1.47584 1.43511 1.20887 1.19707 1.22645 1.02844 0.84324 0.98357 1.19461 0.88892 0.88137 0.92963 1.21505 0.94759 1.14235 1.27066 0.95653 1.25857 1.04245 0.94461 0.94011 1.70053 1.38660 1.18618 1.31278 0.85702 0.78752 0.80467 0.77944 1.20155 1.20086 1.15674 1.45927 1.30479 1.09863 1.19110 1.22155 1.02534 0.81159 0.94772 1.21976 0.96795 1.04173 0.97818 1.73010 1.20198 0.92930 1.26252 0.93718 0.90068 0.93638 0.89527 0.87556 0.77993 0.88967 0.90415 0.89191 0.92156 0.95852 0.92224 0.86282 0.89536 0.94097 0.91172 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.88 71.98 0.71 -1.60 16 2 C -0.03 -0.54 6.51 29.85 0.19 -0.34 16 3 C 0.02 0.44 6.49 43.05 0.28 0.72 16 4 C -0.19 -5.27 8.80 22.66 0.20 -5.07 16 5 C -0.05 -1.76 6.79 40.78 0.28 -1.48 16 6 C 0.57 24.39 7.63 86.59 0.66 25.05 16 7 O -0.58 -28.87 13.99 -4.13 -0.06 -28.93 16 8 N -0.59 -24.19 2.86 -855.35 -2.44 -26.63 16 9 C 0.06 1.71 8.67 127.77 1.11 2.82 16 10 C 0.23 10.88 4.16 85.64 0.36 11.23 16 11 C -0.54 -31.46 9.94 25.60 0.25 -31.21 16 12 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 13 C 0.01 0.72 5.47 84.65 0.46 1.18 16 14 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 15 Si 0.95 43.56 27.47 68.60 1.88 45.44 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.23 -9.47 6.54 99.48 0.65 -8.81 16 19 N -0.27 -8.76 3.35 -334.68 -1.12 -9.88 16 20 C 0.11 3.33 6.32 86.38 0.55 3.87 16 21 C -0.15 -3.91 10.14 71.98 0.73 -3.18 16 22 N -0.29 -8.74 11.87 -47.49 -0.56 -9.30 16 23 H 0.04 0.84 8.14 -2.38 -0.02 0.83 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.11 1.22 8.12 -2.38 -0.02 1.20 16 28 H 0.20 4.10 4.59 -2.91 -0.01 4.08 16 29 H 0.09 1.94 7.43 -2.39 -0.02 1.92 16 30 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 31 H 0.09 2.34 5.27 -2.39 -0.01 2.33 16 32 H 0.06 2.58 7.13 -2.39 -0.02 2.56 16 33 H 0.02 1.19 6.93 -2.39 -0.02 1.17 16 34 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 35 H 0.12 2.79 8.14 -2.39 -0.02 2.78 16 36 H 0.09 2.99 6.76 -2.38 -0.02 2.97 16 37 H 0.04 1.30 7.67 -2.39 -0.02 1.28 16 38 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -77.17 320.34 4.76 -72.41 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.98 Total: 14.29 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 5.78 Total: 1.99 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.83 Total: -105.20 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.06 Total: -28.93 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.88 Total: 45.44 kcal Total: -77.17 4.76 -72.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090137703.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.897 kcal (2) G-P(sol) polarization free energy of solvation -77.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds