Wall clock time and date at job start Mon Mar 30 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47086 * 2 1 4 4 C 1.39662 * 126.06891 * 125.28471 * 3 2 1 5 5 C 1.38408 * 105.35984 * 180.09574 * 4 3 2 6 6 C 1.47162 * 126.88475 * 179.91559 * 5 4 3 7 7 O 1.21632 * 119.99781 * 185.04452 * 6 5 4 8 8 N 1.34779 * 120.00139 * 5.04631 * 6 5 4 9 9 C 1.46499 * 120.00065 * 185.15278 * 8 6 5 10 10 H 1.08999 * 109.47166 * 34.99767 * 9 8 6 11 11 C 1.53001 * 109.46973 * 275.00061 * 9 8 6 12 12 C 1.50698 * 109.47252 * 154.99873 * 9 8 6 13 13 H 1.08004 * 119.99809 * 95.48050 * 12 9 8 14 14 C 1.37869 * 119.99881 * 275.48319 * 12 9 8 15 15 N 1.31516 * 120.00619 * 5.80439 * 14 12 9 16 16 Si 1.86801 * 119.99843 * 185.80551 * 14 12 9 17 17 H 1.48499 * 109.47236 * 179.97438 * 16 14 12 18 18 H 1.48504 * 109.47160 * 299.99736 * 16 14 12 19 19 H 1.48499 * 109.47473 * 59.99864 * 16 14 12 20 20 N 1.36605 * 106.23112 * 359.65342 * 5 4 3 21 21 C 1.46493 * 125.19267 * 180.20725 * 20 5 4 22 22 C 1.53002 * 109.46934 * 93.52171 * 21 20 5 23 23 N 1.28441 * 109.61573 * 0.22640 * 20 5 4 24 24 H 1.09006 * 109.46974 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47314 * 299.99392 * 1 2 3 26 26 H 1.08998 * 109.47465 * 59.99910 * 1 2 3 27 27 H 1.09004 * 109.46729 * 240.00157 * 2 1 3 28 28 H 1.08998 * 109.47465 * 120.00090 * 2 1 3 29 29 H 1.08004 * 127.32401 * 359.97193 * 4 3 2 30 30 H 0.96995 * 120.00150 * 5.15139 * 8 6 5 31 31 H 1.08998 * 109.47183 * 175.12155 * 11 9 8 32 32 H 1.09002 * 109.46853 * 295.11972 * 11 9 8 33 33 H 1.09000 * 109.47322 * 55.11669 * 11 9 8 34 34 H 0.97001 * 119.99156 * 355.10496 * 15 14 12 35 35 H 1.08996 * 109.47598 * 213.52419 * 21 20 5 36 36 H 1.09006 * 109.46784 * 333.52810 * 21 20 5 37 37 H 1.09003 * 109.46690 * 179.97438 * 22 21 20 38 38 H 1.08990 * 109.47694 * 300.00007 * 22 21 20 39 39 H 1.08999 * 109.47122 * 60.00940 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9212 1.9787 0.9215 5 6 3.0845 3.2942 0.5233 6 6 3.9261 4.3144 1.1686 7 8 3.9070 5.4620 0.7660 8 7 4.7181 3.9772 2.2057 9 6 5.4697 5.0120 2.9202 10 1 4.8812 5.9288 2.9563 11 6 6.7876 5.2804 2.1908 12 6 5.7583 4.5447 4.3235 13 1 6.7032 4.0744 4.5524 14 6 4.8160 4.7174 5.3150 15 7 3.6237 5.1846 5.0151 16 14 5.2328 4.2880 7.0846 17 1 4.0583 4.5631 7.9506 18 1 5.5882 2.8489 7.1742 19 1 6.3835 5.1110 7.5359 20 7 2.3124 3.4540 -0.5923 21 6 2.1827 4.6959 -1.3584 22 6 3.1937 4.6947 -2.5068 23 7 1.7174 2.3494 -0.8667 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.3817 1.4885 1.7666 30 1 4.7905 3.0494 2.4790 31 1 7.3068 6.1094 2.6718 32 1 7.4128 4.3884 2.2301 33 1 6.5822 5.5346 1.1509 34 1 3.4301 5.4743 4.1099 35 1 1.1733 4.7695 -1.7630 36 1 2.3755 5.5473 -0.7056 37 1 3.0968 5.6185 -3.0771 38 1 4.2031 4.6211 -2.1023 39 1 3.0009 3.8433 -3.1596 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090137748.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:00 Heat of formation + Delta-G solvation = -7.462609 kcal Electronic energy + Delta-G solvation = -20461.213226 eV Core-core repulsion = 17403.790173 eV Total energy + Delta-G solvation = -3057.423053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.58802 -40.36037 -37.03971 -36.13480 -34.31803 -33.75411 -32.43662 -30.69830 -30.01970 -26.79291 -25.73242 -24.65315 -23.64810 -22.84204 -21.62763 -20.51720 -19.21604 -18.35322 -17.43238 -17.07388 -16.31761 -15.81620 -15.66045 -15.57744 -15.40388 -15.08190 -14.95616 -14.74962 -14.38389 -13.79639 -13.59837 -13.15247 -13.06747 -12.99243 -12.92463 -12.58366 -12.45798 -12.29975 -12.16741 -12.10152 -11.88818 -11.51507 -11.13395 -10.77521 -10.64510 -10.22449 -9.88900 -9.71274 -8.72420 -6.54392 0.24191 1.38418 1.54149 1.58579 1.64640 1.84317 2.22609 2.43276 2.55101 3.21398 3.43184 3.68719 3.90444 3.95133 4.06059 4.25641 4.31478 4.45053 4.46356 4.53284 4.62184 4.66122 4.69154 4.70873 4.83409 4.87225 5.02131 5.09654 5.12499 5.24204 5.27931 5.37579 5.51586 5.68317 5.80034 5.85974 6.10313 6.41996 6.79922 7.06538 7.29362 7.35187 8.63482 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.005871 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.063635 B = 4767.959857 C = 5796.510673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.033 4.033 3 C 0.020 3.980 4 C -0.190 4.190 5 C -0.052 4.052 6 C 0.568 3.432 7 O -0.592 6.592 8 N -0.682 5.682 9 C 0.239 3.761 10 H 0.010 0.990 11 C -0.129 4.129 12 C -0.611 4.611 13 H 0.067 0.933 14 C -0.016 4.016 15 N -0.916 5.916 16 Si 1.119 2.881 17 H -0.291 1.291 18 H -0.262 1.262 19 H -0.269 1.269 20 N -0.263 5.263 21 C 0.104 3.896 22 C -0.150 4.150 23 N -0.288 5.288 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.172 0.828 30 H 0.398 0.602 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.031 0.969 34 H 0.257 0.743 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.039 0.961 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.287 -9.228 -10.153 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.219 4.219 5 C -0.180 4.180 6 C 0.354 3.646 7 O -0.475 6.475 8 N -0.330 5.330 9 C 0.139 3.861 10 H 0.028 0.972 11 C -0.188 4.188 12 C -0.649 4.649 13 H 0.085 0.915 14 C -0.218 4.218 15 N -0.551 5.551 16 Si 0.940 3.060 17 H -0.217 1.217 18 H -0.187 1.187 19 H -0.194 1.194 20 N -0.050 5.050 21 C -0.015 4.015 22 C -0.208 4.208 23 N -0.122 5.122 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.190 0.810 30 H 0.234 0.766 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.552 -8.123 -9.944 13.323 hybrid contribution 1.000 0.156 -0.756 1.263 sum -2.553 -7.967 -10.700 13.582 Atomic orbital electron populations 1.21678 0.94248 1.02722 1.01285 1.20023 0.96400 0.86314 1.04453 1.22543 0.99558 0.97980 0.93579 1.22431 1.03935 0.92038 1.03498 1.21713 1.03831 0.97189 0.95302 1.17549 0.79891 0.86434 0.80760 1.90638 1.69507 1.21653 1.65708 1.47166 1.43723 1.12644 1.29507 1.18790 0.89169 0.87404 0.90761 0.97217 1.21871 0.97565 1.01224 0.98134 1.22371 1.05009 1.44412 0.93142 0.91506 1.27487 0.92036 0.92963 1.09330 1.70911 1.21606 1.39446 1.23162 0.82907 0.75722 0.77735 0.69621 1.21680 1.18710 1.19410 1.45951 1.30212 1.09885 1.18975 1.22349 1.03206 0.81459 0.94532 1.21991 0.97531 1.04495 0.96737 1.72976 1.20161 0.92943 1.26072 0.89865 0.94005 0.93280 0.89156 0.88317 0.81017 0.76635 0.92359 0.92381 0.94941 0.93299 0.86635 0.88289 0.87669 0.94130 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.87 71.98 0.71 -2.07 16 2 C -0.03 -0.69 6.51 29.85 0.19 -0.50 16 3 C 0.02 0.60 6.49 43.05 0.28 0.88 16 4 C -0.19 -6.35 10.42 22.65 0.24 -6.12 16 5 C -0.05 -2.02 6.96 40.79 0.28 -1.73 16 6 C 0.57 25.54 7.75 86.59 0.67 26.21 16 7 O -0.59 -29.24 14.25 -4.13 -0.06 -29.30 16 8 N -0.68 -30.77 5.05 -449.63 -2.27 -33.04 16 9 C 0.24 11.93 2.07 44.25 0.09 12.02 16 10 H 0.01 0.57 6.49 -2.39 -0.02 0.56 16 11 C -0.13 -5.55 9.46 71.98 0.68 -4.87 16 12 C -0.61 -31.53 8.50 25.60 0.22 -31.31 16 13 H 0.07 3.29 7.81 -2.91 -0.02 3.27 16 14 C -0.02 -0.85 5.45 84.65 0.46 -0.39 16 15 N -0.92 -54.18 13.63 21.44 0.29 -53.89 16 16 Si 1.12 46.36 29.91 68.60 2.05 48.42 16 17 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 20 N -0.26 -9.23 3.35 -334.69 -1.12 -10.35 16 21 C 0.10 3.10 6.67 86.38 0.58 3.68 16 22 C -0.15 -3.76 10.24 71.98 0.74 -3.02 16 23 N -0.29 -9.49 11.87 -47.50 -0.56 -10.05 16 24 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 25 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.10 1.71 8.12 -2.39 -0.02 1.69 16 29 H 0.17 5.04 7.62 -2.91 -0.02 5.01 16 30 H 0.40 16.48 7.67 -92.71 -0.71 15.76 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 34 H 0.26 15.94 6.79 -92.71 -0.63 15.31 16 35 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.10 3.44 6.02 -2.38 -0.01 3.43 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -66.68 329.80 3.94 -62.73 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.47 Total: 32.70 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.14 Total: -7.21 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -3.66 Total: -107.33 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.06 Total: -29.30 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.05 Total: 48.42 kcal Total: -66.68 3.94 -62.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090137748.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.271 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds