Wall clock time and date at job start Mon Mar 30 2020 04:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47161 * 78.53016 * 3 2 1 5 5 N 1.46504 * 109.47106 * 184.68175 * 4 3 2 6 6 C 1.46503 * 119.99747 * 264.02915 * 5 4 3 7 7 C 1.50703 * 109.46838 * 84.45316 * 6 5 4 8 8 H 1.07995 * 120.00122 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00079 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46858 * 59.99623 * 11 9 7 13 13 H 1.48492 * 109.46978 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46770 * 299.99847 * 11 9 7 15 15 C 1.34771 * 119.99782 * 84.03304 * 5 4 3 16 16 O 1.21269 * 120.00476 * 5.09482 * 15 5 4 17 17 C 1.50709 * 119.99373 * 185.09964 * 15 5 4 18 18 H 1.08995 * 110.67605 * 44.77823 * 17 15 5 19 19 C 1.54894 * 110.75184 * 281.33754 * 17 15 5 20 20 C 1.54273 * 104.19223 * 203.74650 * 19 17 15 21 21 C 1.53883 * 106.59777 * 23.61190 * 20 19 17 22 22 H 1.09001 * 110.02932 * 240.71384 * 21 20 19 23 23 N 1.46900 * 110.02857 * 119.28385 * 21 20 19 24 24 C 1.54261 * 106.59904 * 359.97438 * 21 20 19 25 25 H 1.08998 * 109.46951 * 198.53020 * 3 2 1 26 26 H 1.09001 * 109.47508 * 318.52918 * 3 2 1 27 27 H 1.08998 * 109.47372 * 304.68218 * 4 3 2 28 28 H 1.09001 * 109.46615 * 64.68236 * 4 3 2 29 29 H 1.08994 * 109.46997 * 204.44658 * 6 5 4 30 30 H 1.08998 * 109.47125 * 324.45497 * 6 5 4 31 31 H 0.96993 * 119.99475 * 180.02562 * 10 9 7 32 32 H 1.08994 * 110.48587 * 322.42223 * 19 17 15 33 33 H 1.09000 * 110.48743 * 85.07285 * 19 17 15 34 34 H 1.09001 * 110.03164 * 264.32691 * 20 19 17 35 35 H 1.08996 * 110.03250 * 142.89616 * 20 19 17 36 36 H 1.00902 * 111.00059 * 62.83878 * 23 21 20 37 37 H 1.00897 * 110.99375 * 186.78409 * 23 21 20 38 38 H 1.09001 * 110.48975 * 217.71442 * 24 21 20 39 39 H 1.08999 * 110.48582 * 95.07011 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1181 -0.2860 -1.4137 5 7 4.5788 -0.3961 -1.3928 6 6 5.4058 0.7656 -1.7288 7 6 5.5857 1.6252 -0.5041 8 1 5.1292 1.3355 0.4308 9 6 6.3321 2.7822 -0.5775 10 7 6.8875 3.1353 -1.7162 11 14 6.5544 3.8482 0.9403 12 1 7.2209 3.0582 2.0066 13 1 7.3928 5.0255 0.5998 14 1 5.2267 4.3077 1.4212 15 6 5.1617 -1.5661 -1.0645 16 8 4.4802 -2.5514 -0.8767 17 6 6.6605 -1.6497 -0.9308 18 1 7.0446 -0.7996 -0.3670 19 6 7.3317 -1.7381 -2.3239 20 6 8.6914 -2.4122 -2.0466 21 6 8.5303 -3.2045 -0.7372 22 1 9.2278 -2.8317 0.0129 23 7 8.7688 -4.6333 -0.9811 24 6 7.0787 -2.9836 -0.2643 25 1 2.9708 0.9752 0.3266 26 1 2.9717 -0.7692 0.6805 27 1 2.6883 -1.2212 -1.7725 28 1 2.8244 0.5271 -2.0777 29 1 6.3802 0.4280 -2.0819 30 1 4.9167 1.3457 -2.5113 31 1 7.4128 3.9490 -1.7677 32 1 6.7327 -2.3506 -2.9978 33 1 7.4780 -0.7417 -2.7409 34 1 9.4670 -1.6550 -1.9318 35 1 8.9465 -3.0880 -2.8629 36 1 9.7154 -4.7941 -1.2912 37 1 8.5597 -5.1801 -0.1594 38 1 7.0402 -2.8965 0.8215 39 1 6.4384 -3.7971 -0.6056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091540413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:06 Heat of formation + Delta-G solvation = -26.130447 kcal Electronic energy + Delta-G solvation = -20524.125052 eV Core-core repulsion = 17465.892501 eV Total energy + Delta-G solvation = -3058.232551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.73857 -37.52582 -36.45320 -35.17392 -32.96719 -32.54972 -30.93068 -28.57469 -27.27875 -26.61212 -23.87396 -23.09151 -20.86395 -19.62997 -18.23955 -17.43352 -16.77951 -16.33120 -15.65776 -15.53258 -15.19428 -14.67592 -14.54876 -14.25985 -14.09132 -13.20718 -13.05825 -12.90447 -12.39679 -12.34488 -12.06434 -11.71490 -11.64409 -11.44365 -11.22042 -11.05877 -10.92198 -10.87460 -10.75746 -10.58949 -10.45956 -10.22536 -10.12490 -9.75824 -9.04751 -8.63899 -8.60807 -7.87687 -6.25574 -4.33198 2.94292 3.06714 3.18654 3.24874 3.26000 3.34268 3.75214 4.25444 4.46018 4.61133 4.87036 4.87768 5.08131 5.30244 5.31844 5.49116 5.57029 5.71954 5.76722 5.82598 5.85922 6.00180 6.09297 6.17346 6.20909 6.26954 6.34327 6.41118 6.47817 6.67761 6.76865 7.16424 7.26659 7.44717 7.46736 7.67488 7.82143 7.96894 8.23628 8.70299 8.92654 9.35029 10.81067 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.007864 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.712609 B = 3559.551504 C = 5316.015940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.223 3.777 3 C -0.047 4.047 4 C 0.132 3.868 5 N -0.596 5.596 6 C 0.230 3.770 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.892 3.108 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.526 3.474 16 O -0.569 6.569 17 C -0.107 4.107 18 H 0.113 0.887 19 C -0.107 4.107 20 C -0.115 4.115 21 C 0.084 3.916 22 H 0.036 0.964 23 N -0.844 5.844 24 C -0.102 4.102 25 H 0.123 0.877 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.266 0.734 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.336 0.664 37 H 0.338 0.662 38 H 0.060 0.940 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.814 -7.731 0.841 9.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.094 4.094 3 C -0.088 4.088 4 C 0.006 3.994 5 N -0.326 5.326 6 C 0.110 3.890 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.720 3.280 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.315 3.685 16 O -0.450 6.450 17 C -0.128 4.128 18 H 0.131 0.869 19 C -0.145 4.145 20 C -0.153 4.153 21 C -0.027 4.027 22 H 0.054 0.946 23 N -0.373 5.373 24 C -0.141 4.141 25 H 0.141 0.859 26 H 0.124 0.876 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.079 0.921 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.323 -7.992 0.269 8.327 hybrid contribution 1.433 1.046 1.683 2.445 sum 3.755 -6.946 1.952 8.134 Atomic orbital electron populations 1.81145 1.13168 1.10126 1.09147 1.29292 0.95275 0.92166 0.92680 1.19876 0.80771 1.06619 1.01559 1.21042 0.81915 1.02387 0.94019 1.48208 1.05492 1.12398 1.66509 1.19669 0.90944 0.81849 0.96518 1.21465 1.33029 1.07161 0.96387 0.91867 1.24917 0.95206 0.97373 0.96078 1.69898 1.33240 1.24747 1.24758 0.86642 0.78389 0.79921 0.83057 1.20089 1.21212 1.20088 1.20416 0.90232 0.82276 0.75558 1.90595 1.65703 1.36253 1.52411 1.22177 0.92196 0.99808 0.98662 0.86886 1.22306 0.95250 1.01381 0.95523 1.22170 0.97788 0.98399 0.96980 1.22017 0.96665 0.87727 0.96270 0.94592 1.58885 1.30877 1.07481 1.40101 1.22301 0.94837 0.97654 0.99262 0.85947 0.87556 0.90671 0.89820 0.93083 0.94684 0.92413 0.91665 0.89906 0.91696 0.91107 0.85199 0.84960 0.92101 0.89255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.13 18.54 42.15 0.78 -7.35 16 2 C 0.22 3.52 15.43 -20.76 -0.32 3.20 16 3 C -0.05 -0.70 5.97 -29.52 -0.18 -0.88 16 4 C 0.13 2.13 5.38 -4.04 -0.02 2.11 16 5 N -0.60 -10.92 2.47 -175.05 -0.43 -11.35 16 6 C 0.23 4.78 4.86 -5.19 -0.03 4.75 16 7 C -0.54 -12.36 8.98 -34.44 -0.31 -12.67 16 8 H 0.06 1.41 7.07 -52.49 -0.37 1.04 16 9 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -22.65 13.29 55.43 0.74 -21.92 16 11 Si 0.89 19.05 29.54 -169.99 -5.02 14.03 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 C 0.53 9.77 6.90 -10.98 -0.08 9.70 16 16 O -0.57 -11.62 15.34 5.57 0.09 -11.53 16 17 C -0.11 -1.77 2.28 -89.78 -0.20 -1.98 16 18 H 0.11 2.02 7.48 -51.93 -0.39 1.63 16 19 C -0.11 -1.63 5.80 -25.07 -0.15 -1.78 16 20 C -0.12 -1.51 6.59 -25.60 -0.17 -1.68 16 21 C 0.08 1.07 4.03 -66.59 -0.27 0.80 16 22 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 23 N -0.84 -9.25 9.10 -3.72 -0.03 -9.29 16 24 C -0.10 -1.52 5.67 -25.09 -0.14 -1.66 16 25 H 0.12 1.85 7.20 -51.93 -0.37 1.47 16 26 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 27 H 0.07 1.22 7.54 -51.93 -0.39 0.82 16 28 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 29 H 0.05 1.09 4.52 -51.93 -0.23 0.85 16 30 H 0.04 0.78 7.95 -51.93 -0.41 0.37 16 31 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 32 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 33 H 0.08 1.34 6.32 -51.93 -0.33 1.01 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 36 H 0.34 3.03 9.07 -39.29 -0.36 2.67 16 37 H 0.34 3.27 9.01 -39.29 -0.35 2.91 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.48 7.19 -51.93 -0.37 1.11 16 LS Contribution 325.03 15.07 4.90 4.90 Total: -1.00 -27.11 325.03 -6.59 -33.70 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -5.65 Total: 7.35 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.96 Total: 1.46 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 1.05 Total: -49.90 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.11 -6.59 -33.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091540413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.570 kcal (2) G-P(sol) polarization free energy of solvation -27.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds