Wall clock time and date at job start Mon Mar 30 2020 04:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47161 * 78.53016 * 3 2 1 5 5 N 1.46504 * 109.47106 * 184.68175 * 4 3 2 6 6 C 1.46503 * 119.99747 * 264.02915 * 5 4 3 7 7 C 1.50703 * 109.46838 * 84.45316 * 6 5 4 8 8 H 1.07995 * 120.00122 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99895 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99835 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00079 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46858 * 59.99623 * 11 9 7 13 13 H 1.48492 * 109.46978 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46770 * 299.99847 * 11 9 7 15 15 C 1.34771 * 119.99782 * 84.03304 * 5 4 3 16 16 O 1.21269 * 120.00476 * 5.09482 * 15 5 4 17 17 C 1.50709 * 119.99373 * 185.09964 * 15 5 4 18 18 H 1.08995 * 110.67605 * 44.77823 * 17 15 5 19 19 C 1.54894 * 110.75184 * 281.33754 * 17 15 5 20 20 C 1.54273 * 104.19223 * 203.74650 * 19 17 15 21 21 C 1.53883 * 106.59777 * 23.61190 * 20 19 17 22 22 H 1.09001 * 110.02932 * 240.71384 * 21 20 19 23 23 N 1.46900 * 110.02857 * 119.28385 * 21 20 19 24 24 C 1.54261 * 106.59904 * 359.97438 * 21 20 19 25 25 H 1.08998 * 109.46951 * 198.53020 * 3 2 1 26 26 H 1.09001 * 109.47508 * 318.52918 * 3 2 1 27 27 H 1.08998 * 109.47372 * 304.68218 * 4 3 2 28 28 H 1.09001 * 109.46615 * 64.68236 * 4 3 2 29 29 H 1.08994 * 109.46997 * 204.44658 * 6 5 4 30 30 H 1.08998 * 109.47125 * 324.45497 * 6 5 4 31 31 H 0.96993 * 119.99475 * 180.02562 * 10 9 7 32 32 H 1.08994 * 110.48587 * 322.42223 * 19 17 15 33 33 H 1.09000 * 110.48743 * 85.07285 * 19 17 15 34 34 H 1.09001 * 110.03164 * 264.32691 * 20 19 17 35 35 H 1.08996 * 110.03250 * 142.89616 * 20 19 17 36 36 H 1.00902 * 111.00059 * 62.83878 * 23 21 20 37 37 H 1.00897 * 110.99375 * 186.78409 * 23 21 20 38 38 H 1.09001 * 110.48975 * 217.71442 * 24 21 20 39 39 H 1.08999 * 110.48582 * 95.07011 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1181 -0.2860 -1.4137 5 7 4.5788 -0.3961 -1.3928 6 6 5.4058 0.7656 -1.7288 7 6 5.5857 1.6252 -0.5041 8 1 5.1292 1.3355 0.4308 9 6 6.3321 2.7822 -0.5775 10 7 6.8875 3.1353 -1.7162 11 14 6.5544 3.8482 0.9403 12 1 7.2209 3.0582 2.0066 13 1 7.3928 5.0255 0.5998 14 1 5.2267 4.3077 1.4212 15 6 5.1617 -1.5661 -1.0645 16 8 4.4802 -2.5514 -0.8767 17 6 6.6605 -1.6497 -0.9308 18 1 7.0446 -0.7996 -0.3670 19 6 7.3317 -1.7381 -2.3239 20 6 8.6914 -2.4122 -2.0466 21 6 8.5303 -3.2045 -0.7372 22 1 9.2278 -2.8317 0.0129 23 7 8.7688 -4.6333 -0.9811 24 6 7.0787 -2.9836 -0.2643 25 1 2.9708 0.9752 0.3266 26 1 2.9717 -0.7692 0.6805 27 1 2.6883 -1.2212 -1.7725 28 1 2.8244 0.5271 -2.0777 29 1 6.3802 0.4280 -2.0819 30 1 4.9167 1.3457 -2.5113 31 1 7.4128 3.9490 -1.7677 32 1 6.7327 -2.3506 -2.9978 33 1 7.4780 -0.7417 -2.7409 34 1 9.4670 -1.6550 -1.9318 35 1 8.9465 -3.0880 -2.8629 36 1 9.7154 -4.7941 -1.2912 37 1 8.5597 -5.1801 -0.1594 38 1 7.0402 -2.8965 0.8215 39 1 6.4384 -3.7971 -0.6056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091540413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:06 Heat of formation + Delta-G solvation = -42.232334 kcal Electronic energy + Delta-G solvation = -20524.823282 eV Core-core repulsion = 17465.892501 eV Total energy + Delta-G solvation = -3058.930781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16529 -38.73708 -37.80799 -36.72677 -34.60228 -33.77823 -32.28960 -29.76901 -29.00623 -27.76172 -25.18006 -24.82922 -22.16640 -20.70631 -19.68219 -18.93486 -18.18921 -17.92448 -17.06647 -16.77159 -16.27133 -16.14146 -15.89106 -15.66581 -15.37711 -14.54190 -14.47046 -14.21118 -14.01686 -13.72695 -13.55150 -13.21752 -13.02992 -12.83966 -12.67689 -12.59140 -12.30869 -12.13512 -12.02598 -11.93389 -11.73248 -11.71270 -11.51302 -11.36806 -10.59706 -10.41087 -9.51242 -9.45237 -8.09338 -6.20881 1.50306 1.52984 1.57142 1.60674 1.76632 1.87982 2.30709 2.51076 3.15910 3.23282 3.63301 3.66185 3.70948 4.03346 4.16909 4.20586 4.32908 4.55093 4.55885 4.60950 4.64978 4.73766 4.86314 4.92593 4.98563 5.02650 5.11647 5.19066 5.27723 5.33037 5.44384 5.49001 5.80939 5.91315 6.17613 6.38222 6.52702 6.64977 6.72257 6.93020 7.38760 7.52342 8.96303 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.007864 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.712609 B = 3559.551504 C = 5316.015940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.033 4.033 4 C 0.127 3.873 5 N -0.596 5.596 6 C 0.242 3.758 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.026 3.974 10 N -0.920 5.920 11 Si 0.944 3.056 12 H -0.271 1.271 13 H -0.292 1.292 14 H -0.273 1.273 15 C 0.524 3.476 16 O -0.587 6.587 17 C -0.108 4.108 18 H 0.101 0.899 19 C -0.103 4.103 20 C -0.111 4.111 21 C 0.091 3.909 22 H 0.048 0.952 23 N -0.848 5.848 24 C -0.097 4.097 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.020 0.980 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.349 0.651 37 H 0.347 0.653 38 H 0.066 0.934 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -8.234 1.679 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.074 4.074 4 C 0.002 3.998 5 N -0.325 5.325 6 C 0.121 3.879 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.175 4.175 10 N -0.559 5.559 11 Si 0.771 3.229 12 H -0.196 1.196 13 H -0.218 1.218 14 H -0.198 1.198 15 C 0.314 3.686 16 O -0.469 6.469 17 C -0.129 4.129 18 H 0.119 0.881 19 C -0.141 4.141 20 C -0.149 4.149 21 C -0.021 4.021 22 H 0.066 0.934 23 N -0.380 5.380 24 C -0.135 4.135 25 H 0.143 0.857 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.085 0.915 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.027 -8.510 1.118 9.101 hybrid contribution 1.183 1.160 1.389 2.162 sum 4.210 -7.350 2.507 8.833 Atomic orbital electron populations 1.81173 1.14070 1.11256 1.10168 1.29261 0.95074 0.91126 0.91681 1.19748 0.80040 1.06851 1.00750 1.21167 0.80736 1.02847 0.95043 1.48147 1.06226 1.11723 1.66396 1.19378 0.90932 0.82119 0.95429 1.21738 1.31963 1.06933 0.97027 0.91369 1.25523 0.95371 0.98619 0.97967 1.69996 1.34394 1.25216 1.26335 0.85817 0.78177 0.78381 0.80548 1.19587 1.21826 1.19775 1.20755 0.91041 0.81870 0.74952 1.90584 1.66332 1.36683 1.53330 1.22176 0.90852 1.00394 0.99488 0.88092 1.22243 0.96490 1.00800 0.94558 1.22151 0.96382 0.98667 0.97652 1.21891 0.95292 0.88803 0.96064 0.93441 1.58807 1.32051 1.06470 1.40715 1.22241 0.95993 0.95807 0.99449 0.85669 0.87057 0.90575 0.89016 0.93502 0.96200 0.92688 0.92351 0.91178 0.90966 0.90216 0.83687 0.83999 0.91514 0.90964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.84 18.54 20.00 0.37 -16.47 16 2 C 0.25 7.43 15.43 89.44 1.38 8.81 16 3 C -0.03 -0.93 5.97 28.79 0.17 -0.76 16 4 C 0.13 3.98 5.38 86.38 0.47 4.44 16 5 N -0.60 -21.48 2.47 -826.14 -2.04 -23.52 16 6 C 0.24 10.01 4.86 85.63 0.42 10.42 16 7 C -0.54 -24.07 8.98 25.60 0.23 -23.84 16 8 H 0.07 2.94 7.07 -2.91 -0.02 2.92 16 9 C 0.03 1.21 5.46 84.66 0.46 1.68 16 10 N -0.92 -46.83 13.29 21.45 0.28 -46.54 16 11 Si 0.94 38.31 29.54 68.60 2.03 40.34 16 12 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 13 H -0.29 -12.07 7.11 99.48 0.71 -11.37 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 15 C 0.52 19.17 6.90 87.66 0.61 19.78 16 16 O -0.59 -23.60 15.34 -3.00 -0.05 -23.65 16 17 C -0.11 -3.50 2.28 -10.25 -0.02 -3.53 16 18 H 0.10 3.55 7.48 -2.39 -0.02 3.54 16 19 C -0.10 -3.09 5.80 31.67 0.18 -2.91 16 20 C -0.11 -2.70 6.59 31.32 0.21 -2.50 16 21 C 0.09 2.11 4.03 45.64 0.18 2.29 16 22 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 23 N -0.85 -16.65 9.10 -165.67 -1.51 -18.16 16 24 C -0.10 -2.74 5.67 31.66 0.18 -2.56 16 25 H 0.13 3.56 7.20 -2.39 -0.02 3.54 16 26 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.08 2.40 7.54 -2.39 -0.02 2.38 16 28 H 0.09 2.72 7.89 -2.39 -0.02 2.70 16 29 H 0.05 2.01 4.52 -2.39 -0.01 2.00 16 30 H 0.02 0.89 7.95 -2.39 -0.02 0.87 16 31 H 0.26 13.03 8.31 -92.71 -0.77 12.26 16 32 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 33 H 0.07 2.27 6.32 -2.39 -0.02 2.26 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.82 7.92 -2.39 -0.02 1.80 16 36 H 0.35 5.36 9.07 -89.69 -0.81 4.55 16 37 H 0.35 5.92 9.01 -89.70 -0.81 5.11 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.33 7.19 -2.39 -0.02 2.31 16 Total: -1.00 -55.65 325.03 3.01 -52.65 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.54 Total: 24.04 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 4.46 Total: 11.33 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -2.89 Total: -104.70 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -55.65 3.01 -52.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091540413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.416 kcal (2) G-P(sol) polarization free energy of solvation -55.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds