Wall clock time and date at job start Mon Mar 30 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 110.99922 * 2 1 4 4 H 1.08997 * 109.47061 * 35.00174 * 3 2 1 5 5 C 1.53003 * 109.47250 * 274.99909 * 3 2 1 6 6 C 1.50697 * 109.46994 * 155.00128 * 3 2 1 7 7 C 1.34854 * 125.89275 * 35.19327 * 6 3 2 8 8 C 1.40888 * 107.41568 * 180.28328 * 7 6 3 9 9 C 1.34859 * 107.41764 * 359.56879 * 8 7 6 10 10 N 1.36341 * 125.88721 * 215.21771 * 6 3 2 11 11 C 1.46495 * 125.64058 * 359.94390 * 10 6 3 12 12 C 1.50698 * 109.47331 * 85.67350 * 11 10 6 13 13 O 1.21279 * 119.99747 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00032 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99682 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46718 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00490 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99713 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99696 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99902 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47165 * 90.00115 * 20 18 16 22 22 H 1.48504 * 109.46673 * 209.99982 * 20 18 16 23 23 H 1.48500 * 109.47373 * 329.99792 * 20 18 16 24 24 H 1.09006 * 109.46895 * 59.99934 * 1 2 3 25 25 H 1.08996 * 109.46815 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46852 * 300.00051 * 1 2 3 27 27 H 1.00898 * 111.00301 * 236.05174 * 2 1 3 28 28 H 1.08997 * 109.47243 * 305.17259 * 5 3 2 29 29 H 1.09003 * 109.46868 * 65.17097 * 5 3 2 30 30 H 1.08995 * 109.47561 * 185.16677 * 5 3 2 31 31 H 1.08001 * 126.28651 * 0.02562 * 7 6 3 32 32 H 1.08000 * 126.28885 * 179.70453 * 8 7 6 33 33 H 1.07999 * 125.88399 * 180.15561 * 9 8 7 34 34 H 1.09002 * 109.47177 * 205.68031 * 11 10 6 35 35 H 1.09008 * 109.46919 * 325.67293 * 11 10 6 36 36 H 0.96991 * 120.00178 * 0.02562 * 14 12 11 37 37 H 1.08997 * 109.47114 * 299.99858 * 15 14 12 38 38 H 1.08995 * 109.47278 * 60.00012 * 15 14 12 39 39 H 0.97006 * 119.99839 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3398 2.0123 0.5895 5 6 2.0609 1.8927 -1.4370 6 6 3.3777 1.3790 0.6004 7 6 4.3014 0.4051 0.4705 8 6 5.4434 0.8084 1.1902 9 6 5.1776 2.0177 1.7246 10 7 3.9098 2.3714 1.3691 11 6 3.2317 3.6130 1.7495 12 6 2.4087 3.3764 2.9895 13 8 2.3907 2.2787 3.5050 14 7 1.6926 4.3845 3.5256 15 6 0.8930 4.1545 4.7315 16 6 0.1944 5.4314 5.1220 17 1 0.3326 6.3250 4.5314 18 6 -0.6203 5.4592 6.2340 19 7 -1.2296 6.5737 6.5751 20 14 -0.8587 3.9138 7.2559 21 1 0.1745 3.8605 8.3212 22 1 -2.2081 3.9336 7.8757 23 1 -0.7322 2.7189 6.3834 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8307 -0.5260 -0.7814 28 1 2.6416 1.2017 -2.0481 29 1 1.0515 1.9741 -1.8403 30 1 2.5360 2.8736 -1.4465 31 1 4.1852 -0.5167 -0.0802 32 1 6.3635 0.2523 1.2931 33 1 5.8512 2.6028 2.3331 34 1 3.9739 4.3862 1.9480 35 1 2.5802 3.9349 0.9370 36 1 1.7067 5.2622 3.1132 37 1 0.1512 3.3809 4.5334 38 1 1.5448 3.8334 5.5439 39 1 -1.8031 6.5931 7.3572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091800652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:17 Heat of formation + Delta-G solvation = 17.242944 kcal Electronic energy + Delta-G solvation = -20185.576264 eV Core-core repulsion = 17129.224525 eV Total energy + Delta-G solvation = -3056.351740 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.23099 -38.80337 -36.84642 -34.43020 -32.85320 -32.34570 -31.03892 -28.60203 -27.85792 -26.41242 -25.13255 -22.60779 -22.23031 -20.35748 -20.15074 -18.89187 -17.67157 -17.12848 -16.21476 -15.51949 -15.18552 -15.01472 -14.85300 -14.33206 -14.23762 -13.67162 -13.24337 -13.05496 -13.01342 -12.64248 -12.57378 -12.38584 -12.36517 -12.07260 -11.93272 -11.76018 -11.54542 -11.09602 -11.03114 -10.81947 -10.03052 -9.60413 -9.51158 -8.84716 -8.51934 -8.31893 -8.28613 -7.73488 -6.27816 -4.30852 2.36201 2.99263 3.00309 3.22918 3.29441 3.30055 3.38453 3.85552 4.22688 4.28252 4.69313 4.80002 4.99160 5.00388 5.07732 5.11380 5.18140 5.29975 5.35435 5.39089 5.53971 5.64074 5.81662 5.84224 5.87876 5.93541 6.47336 6.55701 6.70638 6.87654 6.98124 7.07330 7.29207 7.29453 7.29943 7.47894 7.54603 8.02157 8.38379 8.65167 8.77493 9.31845 10.83921 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.004831 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.516423 B = 5795.051966 C = 6273.414120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.677 5.677 3 C 0.153 3.847 4 H 0.080 0.920 5 C -0.175 4.175 6 C 0.041 3.959 7 C -0.182 4.182 8 C -0.204 4.204 9 C -0.007 4.007 10 N -0.425 5.425 11 C 0.082 3.918 12 C 0.478 3.522 13 O -0.530 6.530 14 N -0.703 5.703 15 C 0.222 3.778 16 C -0.546 4.546 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.891 5.891 20 Si 0.876 3.124 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 H 0.021 0.979 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.341 0.659 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.157 0.843 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.397 0.603 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.311 -7.834 -16.009 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.307 5.307 3 C 0.042 3.958 4 H 0.098 0.902 5 C -0.234 4.234 6 C -0.070 4.070 7 C -0.206 4.206 8 C -0.228 4.228 9 C -0.136 4.136 10 N -0.101 5.101 11 C -0.045 4.045 12 C 0.260 3.740 13 O -0.407 6.407 14 N -0.353 5.353 15 C 0.100 3.900 16 C -0.584 4.584 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.528 5.528 20 Si 0.702 3.298 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.039 0.961 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.159 0.841 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.174 0.826 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.230 0.770 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.008 -8.301 -14.683 18.671 hybrid contribution -0.407 0.143 -0.273 0.510 sum 7.601 -8.158 -14.956 18.655 Atomic orbital electron populations 1.22234 0.87278 1.02000 1.00552 1.60202 1.07696 1.12800 1.49999 1.19781 0.91184 0.90458 0.94347 0.90198 1.22483 1.01818 1.02262 0.96862 1.19891 0.95580 0.90772 1.00788 1.20407 0.93969 0.99257 1.06993 1.20762 0.99970 0.96706 1.05398 1.21670 0.86817 0.99124 1.05987 1.43362 1.11961 1.15279 1.39462 1.21703 0.98317 0.86683 0.97766 1.20708 0.81462 0.85761 0.86021 1.90760 1.63950 1.23796 1.62161 1.46160 1.46912 1.12250 1.29945 1.19507 0.90245 0.98012 0.82200 1.21061 1.28852 0.95629 1.12832 0.90200 1.24782 0.94593 0.96323 0.96782 1.69876 1.30057 1.26344 1.26500 0.86833 0.77991 0.83941 0.81047 1.19775 1.20787 1.18529 0.96057 0.91266 0.91404 0.84058 0.91840 0.92352 0.91968 0.85286 0.85126 0.82578 0.86564 0.87235 0.76955 0.95671 0.96105 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.50 60.07 0.63 0.95 16 2 N -0.68 -8.33 6.24 -115.24 -0.72 -9.05 16 3 C 0.15 1.96 2.68 -68.86 -0.18 1.77 16 4 H 0.08 1.17 7.22 -51.93 -0.37 0.79 16 5 C -0.17 -1.69 9.15 37.16 0.34 -1.35 16 6 C 0.04 0.60 5.94 -81.79 -0.49 0.12 16 7 C -0.18 -2.62 10.35 -39.78 -0.41 -3.03 16 8 C -0.20 -2.87 10.86 -39.78 -0.43 -3.30 16 9 C -0.01 -0.10 11.43 -16.75 -0.19 -0.29 16 10 N -0.42 -6.23 2.24 -113.82 -0.25 -6.49 16 11 C 0.08 1.06 6.07 -5.20 -0.03 1.03 16 12 C 0.48 8.79 7.90 -10.99 -0.09 8.70 16 13 O -0.53 -12.31 16.43 5.56 0.09 -12.21 16 14 N -0.70 -13.51 5.55 -61.47 -0.34 -13.85 16 15 C 0.22 5.37 4.50 -5.19 -0.02 5.35 16 16 C -0.55 -14.66 9.83 -34.44 -0.34 -15.00 16 17 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 19 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 20 Si 0.88 21.35 27.47 -169.99 -4.67 16.69 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 24 H 0.02 0.20 7.54 -51.93 -0.39 -0.19 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 27 H 0.34 3.43 8.49 -39.29 -0.33 3.10 16 28 H 0.06 0.56 8.04 -51.93 -0.42 0.15 16 29 H 0.06 0.51 7.59 -51.93 -0.39 0.11 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.12 1.16 8.13 -51.93 -0.42 0.74 16 35 H 0.11 1.15 7.74 -51.92 -0.40 0.75 16 36 H 0.40 6.45 8.32 -40.82 -0.34 6.11 16 37 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 38 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 329.80 15.07 4.97 4.97 Total: -1.00 -33.85 329.80 -7.41 -41.26 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.95 Total: 6.93 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.31 Total: -2.93 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.54 Total: -54.71 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.85 -7.41 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091800652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.508 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds