Wall clock time and date at job start Mon Mar 30 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46907 * 110.99922 * 2 1 4 4 H 1.08997 * 109.47061 * 35.00174 * 3 2 1 5 5 C 1.53003 * 109.47250 * 274.99909 * 3 2 1 6 6 C 1.50697 * 109.46994 * 155.00128 * 3 2 1 7 7 C 1.34854 * 125.89275 * 35.19327 * 6 3 2 8 8 C 1.40888 * 107.41568 * 180.28328 * 7 6 3 9 9 C 1.34859 * 107.41764 * 359.56879 * 8 7 6 10 10 N 1.36341 * 125.88721 * 215.21771 * 6 3 2 11 11 C 1.46495 * 125.64058 * 359.94390 * 10 6 3 12 12 C 1.50698 * 109.47331 * 85.67350 * 11 10 6 13 13 O 1.21279 * 119.99747 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00032 * 180.02562 * 12 11 10 15 15 C 1.46505 * 119.99682 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.46718 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00490 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99713 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99696 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99902 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47165 * 90.00115 * 20 18 16 22 22 H 1.48504 * 109.46673 * 209.99982 * 20 18 16 23 23 H 1.48500 * 109.47373 * 329.99792 * 20 18 16 24 24 H 1.09006 * 109.46895 * 59.99934 * 1 2 3 25 25 H 1.08996 * 109.46815 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46852 * 300.00051 * 1 2 3 27 27 H 1.00898 * 111.00301 * 236.05174 * 2 1 3 28 28 H 1.08997 * 109.47243 * 305.17259 * 5 3 2 29 29 H 1.09003 * 109.46868 * 65.17097 * 5 3 2 30 30 H 1.08995 * 109.47561 * 185.16677 * 5 3 2 31 31 H 1.08001 * 126.28651 * 0.02562 * 7 6 3 32 32 H 1.08000 * 126.28885 * 179.70453 * 8 7 6 33 33 H 1.07999 * 125.88399 * 180.15561 * 9 8 7 34 34 H 1.09002 * 109.47177 * 205.68031 * 11 10 6 35 35 H 1.09008 * 109.46919 * 325.67293 * 11 10 6 36 36 H 0.96991 * 120.00178 * 0.02562 * 14 12 11 37 37 H 1.08997 * 109.47114 * 299.99858 * 15 14 12 38 38 H 1.08995 * 109.47278 * 60.00012 * 15 14 12 39 39 H 0.97006 * 119.99839 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3398 2.0123 0.5895 5 6 2.0609 1.8927 -1.4370 6 6 3.3777 1.3790 0.6004 7 6 4.3014 0.4051 0.4705 8 6 5.4434 0.8084 1.1902 9 6 5.1776 2.0177 1.7246 10 7 3.9098 2.3714 1.3691 11 6 3.2317 3.6130 1.7495 12 6 2.4087 3.3764 2.9895 13 8 2.3907 2.2787 3.5050 14 7 1.6926 4.3845 3.5256 15 6 0.8930 4.1545 4.7315 16 6 0.1944 5.4314 5.1220 17 1 0.3326 6.3250 4.5314 18 6 -0.6203 5.4592 6.2340 19 7 -1.2296 6.5737 6.5751 20 14 -0.8587 3.9138 7.2559 21 1 0.1745 3.8605 8.3212 22 1 -2.2081 3.9336 7.8757 23 1 -0.7322 2.7189 6.3834 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8307 -0.5260 -0.7814 28 1 2.6416 1.2017 -2.0481 29 1 1.0515 1.9741 -1.8403 30 1 2.5360 2.8736 -1.4465 31 1 4.1852 -0.5167 -0.0802 32 1 6.3635 0.2523 1.2931 33 1 5.8512 2.6028 2.3331 34 1 3.9739 4.3862 1.9480 35 1 2.5802 3.9349 0.9370 36 1 1.7067 5.2622 3.1132 37 1 0.1512 3.3809 4.5334 38 1 1.5448 3.8334 5.5439 39 1 -1.8031 6.5931 7.3572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091800652.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:17 Heat of formation + Delta-G solvation = -7.579173 kcal Electronic energy + Delta-G solvation = -20186.652632 eV Core-core repulsion = 17129.224525 eV Total energy + Delta-G solvation = -3057.428108 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.30910 -40.33104 -37.77041 -36.24604 -34.50889 -33.85710 -31.94579 -30.37726 -28.79238 -27.78539 -26.02095 -24.18125 -23.50968 -21.86792 -21.25737 -20.05298 -19.30204 -18.32339 -17.91081 -16.91096 -16.63973 -16.23043 -16.03772 -15.83576 -15.24732 -15.13008 -14.61483 -14.54303 -14.19513 -14.12249 -13.83610 -13.48762 -13.39036 -13.11009 -13.06155 -12.95849 -12.86050 -12.72600 -12.45455 -11.99000 -11.97704 -11.69659 -11.09760 -10.95579 -10.03256 -9.45896 -9.39073 -8.78462 -8.43623 -6.50373 1.24592 1.28588 1.32317 1.43422 1.55585 1.96322 2.23545 2.24131 2.48547 2.91931 3.30658 3.72882 3.83245 3.85241 4.07800 4.14255 4.19965 4.35574 4.47745 4.55077 4.72040 4.72801 4.78953 4.81688 4.91025 4.96364 4.99048 5.16506 5.21254 5.41679 5.45196 5.51681 5.94457 6.03345 6.25494 6.42310 6.47490 6.50211 6.52187 6.75339 7.11311 7.30674 8.70855 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.021861 B = 0.004831 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.516423 B = 5795.051966 C = 6273.414120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.694 5.694 3 C 0.154 3.846 4 H 0.056 0.944 5 C -0.165 4.165 6 C 0.026 3.974 7 C -0.196 4.196 8 C -0.217 4.217 9 C -0.020 4.020 10 N -0.435 5.435 11 C 0.091 3.909 12 C 0.480 3.520 13 O -0.581 6.581 14 N -0.699 5.699 15 C 0.235 3.765 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.031 3.969 19 N -0.928 5.928 20 Si 0.932 3.068 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.265 1.265 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.354 0.646 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.177 0.823 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.413 0.587 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -8.217 -17.292 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.326 5.326 3 C 0.043 3.957 4 H 0.075 0.925 5 C -0.224 4.224 6 C -0.085 4.085 7 C -0.221 4.221 8 C -0.241 4.241 9 C -0.149 4.149 10 N -0.111 5.111 11 C -0.034 4.034 12 C 0.266 3.734 13 O -0.461 6.461 14 N -0.350 5.350 15 C 0.111 3.889 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.170 4.170 19 N -0.567 5.567 20 Si 0.756 3.244 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.190 1.190 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.174 0.826 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.158 0.842 36 H 0.249 0.751 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.824 -8.662 -16.003 20.224 hybrid contribution -0.625 0.253 0.088 0.680 sum 8.200 -8.409 -15.916 19.780 Atomic orbital electron populations 1.22190 0.86738 1.02735 1.00052 1.60144 1.08390 1.13019 1.51079 1.19773 0.89749 0.90441 0.95689 0.92532 1.22382 1.02710 1.02523 0.94745 1.20304 0.96342 0.90970 1.00913 1.20680 0.94290 0.99718 1.07414 1.21104 1.00645 0.97043 1.05329 1.22139 0.87113 0.99571 1.06093 1.43543 1.12196 1.15804 1.39541 1.21825 0.98925 0.87148 0.95534 1.21615 0.80625 0.84341 0.86843 1.90736 1.65565 1.25787 1.64017 1.45945 1.46641 1.13605 1.28798 1.19061 0.90003 0.95996 0.83876 1.21265 1.28580 0.96074 1.12409 0.91715 1.25520 0.94566 0.98840 0.98067 1.69966 1.31117 1.28148 1.27427 0.85944 0.78496 0.80347 0.79610 1.19064 1.19656 1.19009 0.94217 0.89953 0.94105 0.82649 0.90916 0.91326 0.91472 0.84320 0.83549 0.80558 0.82728 0.84241 0.75100 0.97374 0.97359 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.50 127.69 1.34 2.02 16 2 N -0.69 -16.39 6.24 -518.50 -3.24 -19.62 16 3 C 0.15 3.75 2.68 44.17 0.12 3.87 16 4 H 0.06 1.62 7.22 -2.39 -0.02 1.60 16 5 C -0.16 -2.79 9.15 71.98 0.66 -2.13 16 6 C 0.03 0.73 5.94 41.08 0.24 0.97 16 7 C -0.20 -5.42 10.35 22.14 0.23 -5.19 16 8 C -0.22 -5.79 10.86 22.14 0.24 -5.55 16 9 C -0.02 -0.54 11.43 83.22 0.95 0.41 16 10 N -0.43 -11.93 2.24 -514.01 -1.15 -13.08 16 11 C 0.09 2.14 6.07 85.63 0.52 2.66 16 12 C 0.48 17.13 7.90 87.66 0.69 17.82 16 13 O -0.58 -26.97 16.43 -3.03 -0.05 -27.02 16 14 N -0.70 -26.25 5.55 -466.79 -2.59 -28.84 16 15 C 0.23 11.33 4.50 85.63 0.38 11.72 16 16 C -0.55 -29.40 9.83 25.60 0.25 -29.15 16 17 H 0.06 3.61 7.84 -2.91 -0.02 3.59 16 18 C 0.03 1.72 5.47 84.66 0.46 2.19 16 19 N -0.93 -54.59 13.96 21.45 0.30 -54.29 16 20 Si 0.93 44.09 27.47 68.60 1.88 45.98 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.27 -12.67 6.54 99.48 0.65 -12.02 16 24 H 0.04 0.68 7.54 -2.38 -0.02 0.66 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.07 8.06 -2.39 -0.02 1.05 16 27 H 0.35 6.57 8.49 -89.70 -0.76 5.81 16 28 H 0.07 1.10 8.04 -2.39 -0.02 1.09 16 29 H 0.07 1.02 7.59 -2.39 -0.02 1.00 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 32 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 33 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.16 2.48 8.13 -2.39 -0.02 2.46 16 35 H 0.14 2.48 7.74 -2.38 -0.02 2.46 16 36 H 0.41 12.82 8.32 -92.71 -0.77 12.05 16 37 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 38 H 0.01 0.43 7.57 -2.39 -0.02 0.41 16 39 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 Total: -1.00 -73.43 329.80 0.72 -72.71 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: -0.54 Total: 24.52 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.09 Total: -0.36 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -6.68 Total: -115.84 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.05 Total: -27.02 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -73.43 0.72 -72.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091800652.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.133 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds