Wall clock time and date at job start Mon Mar 30 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46855 * 2 1 4 4 C 1.53003 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47024 * 304.99783 * 4 3 2 6 6 N 1.46899 * 109.47308 * 64.99629 * 4 3 2 7 7 C 1.50697 * 109.47244 * 185.00094 * 4 3 2 8 8 C 1.40890 * 126.28987 * 280.01717 * 7 4 3 9 9 C 1.34856 * 107.41764 * 179.69982 * 8 7 4 10 10 N 1.36337 * 108.21648 * 0.27154 * 9 8 7 11 11 C 1.46501 * 125.63397 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47432 * 89.97113 * 11 10 9 13 13 O 1.21296 * 120.00094 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00261 * 179.97438 * 12 11 10 15 15 C 1.37103 * 120.00203 * 180.02562 * 14 12 11 16 16 H 1.07994 * 119.99813 * 0.02562 * 15 14 12 17 17 C 1.38956 * 119.99712 * 180.02562 * 15 14 12 18 18 N 1.31403 * 120.00212 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99502 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47626 * 59.99831 * 19 17 15 21 21 H 1.48494 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47047 * 299.99934 * 19 17 15 23 23 C 1.34854 * 126.29275 * 100.18292 * 7 4 3 24 24 H 1.08997 * 109.47116 * 300.00018 * 1 2 3 25 25 H 1.08997 * 109.47198 * 60.00066 * 1 2 3 26 26 H 1.08997 * 109.46861 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47116 * 239.99982 * 2 1 3 28 28 H 1.09005 * 109.47193 * 119.99591 * 2 1 3 29 29 H 1.08998 * 109.47785 * 59.99987 * 3 2 1 30 30 H 1.09003 * 109.47606 * 299.99919 * 3 2 1 31 31 H 1.00903 * 110.99938 * 60.00454 * 6 4 3 32 32 H 1.00898 * 111.00031 * 183.95559 * 6 4 3 33 33 H 1.08002 * 126.29400 * 359.97404 * 8 7 4 34 34 H 1.07995 * 125.89299 * 180.24113 * 9 8 7 35 35 H 1.09005 * 109.47040 * 209.97474 * 11 10 9 36 36 H 1.08996 * 109.47091 * 329.96636 * 11 10 9 37 37 H 0.97006 * 120.00046 * 0.02562 * 14 12 11 38 38 H 0.97002 * 120.00075 * 180.02562 * 18 17 15 39 39 H 1.07991 * 125.89267 * 0.02562 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8410 6 7 4.0592 0.8574 -1.2561 7 6 4.0723 2.8580 0.1232 8 6 4.1635 3.8044 -0.9165 9 6 4.6543 4.9423 -0.3846 10 7 4.8751 4.7311 0.9441 11 6 5.4056 5.7174 1.8886 12 6 4.2660 6.4905 2.5006 13 8 3.1230 6.2418 2.1798 14 7 4.5167 7.4577 3.4051 15 6 3.4799 8.1607 3.9623 16 1 2.4622 7.9392 3.6766 17 6 3.7385 9.1582 4.8945 18 7 4.9768 9.4280 5.2416 19 14 2.3258 10.1164 5.6530 20 1 1.4217 9.1815 6.3696 21 1 2.8636 11.1166 6.6098 22 1 1.5692 10.8136 4.5821 23 6 4.5200 3.4505 1.2489 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.7353 1.3865 -2.0520 32 1 5.0657 0.7869 -1.2541 33 1 3.8867 3.6488 -1.9487 34 1 4.8408 5.8620 -0.9190 35 1 5.9611 5.2057 2.6746 36 1 6.0692 6.4037 1.3626 37 1 5.4308 7.6564 3.6619 38 1 5.1573 10.1241 5.8926 39 1 4.5820 2.9913 2.2243 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091820597.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:53 Heat of formation + Delta-G solvation = -24.930807 kcal Electronic energy + Delta-G solvation = -19549.694858 eV Core-core repulsion = 16491.514327 eV Total energy + Delta-G solvation = -3058.180531 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18998 -40.00825 -37.65042 -36.09870 -34.25305 -33.46812 -32.74135 -29.98064 -28.81314 -28.08028 -26.33542 -23.85162 -21.97293 -21.72902 -20.81479 -20.20011 -19.97191 -18.08779 -17.90691 -16.92208 -16.64405 -16.03956 -15.85680 -15.71360 -15.14153 -14.84498 -14.68206 -14.46174 -14.11861 -13.79558 -13.62024 -13.54219 -13.27778 -13.04523 -12.83934 -12.79894 -12.52491 -12.18039 -12.16971 -11.85142 -11.71137 -11.60656 -11.39086 -10.65828 -10.12879 -9.67206 -9.26446 -8.90278 -8.55187 -6.05291 1.31883 1.33739 1.39802 1.49795 1.88018 2.07035 2.09814 2.27180 3.10239 3.13139 3.85662 3.91641 4.07139 4.12376 4.21870 4.24520 4.29593 4.32491 4.38068 4.56786 4.62261 4.74627 4.90065 5.00550 5.08897 5.14224 5.30863 5.32695 5.33058 5.42404 5.59227 5.61988 5.86325 6.14523 6.31463 6.40857 6.45525 6.55456 6.74527 7.01936 7.40825 7.95890 8.60809 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025554 B = 0.003794 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.464363 B = 7377.708365 C = 8157.692935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.101 4.101 4 C 0.174 3.826 5 H 0.078 0.922 6 N -0.829 5.829 7 C -0.208 4.208 8 C -0.205 4.205 9 C -0.019 4.019 10 N -0.428 5.428 11 C 0.103 3.897 12 C 0.417 3.583 13 O -0.626 6.626 14 N -0.560 5.560 15 C -0.339 4.339 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.913 5.913 19 Si 0.991 3.009 20 H -0.272 1.272 21 H -0.267 1.267 22 H -0.272 1.272 23 C -0.018 4.018 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.341 0.659 32 H 0.344 0.656 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.400 0.600 38 H 0.281 0.719 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 -12.988 -9.135 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.139 4.139 4 C 0.062 3.938 5 H 0.096 0.904 6 N -0.356 5.356 7 C -0.216 4.216 8 C -0.230 4.230 9 C -0.149 4.149 10 N -0.102 5.102 11 C -0.023 4.023 12 C 0.203 3.797 13 O -0.513 6.513 14 N -0.197 5.197 15 C -0.469 4.469 16 H 0.094 0.906 17 C -0.207 4.207 18 N -0.553 5.553 19 Si 0.815 3.185 20 H -0.198 1.198 21 H -0.191 1.191 22 H -0.198 1.198 23 C -0.149 4.149 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.184 0.816 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.320 -13.409 -8.751 16.067 hybrid contribution 0.246 2.038 0.655 2.155 sum 1.565 -11.371 -8.096 14.046 Atomic orbital electron populations 1.21805 0.96199 1.01818 1.01295 1.21383 0.95123 0.95687 1.02464 1.21534 0.94250 0.97337 1.00788 1.19641 0.93941 0.86875 0.93385 0.90388 1.59086 1.16446 1.56600 1.03499 1.20594 1.08540 0.99168 0.93345 1.20762 1.09144 0.93482 0.99600 1.22096 1.08081 1.01046 0.83720 1.43631 1.49124 1.09781 1.07629 1.21615 0.94078 0.92161 0.94452 1.21070 0.91031 0.83960 0.83612 1.90569 1.24664 1.70408 1.65608 1.41847 1.09834 1.31311 1.36711 1.19595 0.89331 1.15765 1.22192 0.90574 1.26015 1.00092 0.97734 0.96813 1.69636 1.19726 1.32757 1.33228 0.85014 0.77570 0.77849 0.78103 1.19761 1.19143 1.19761 1.21901 1.07578 0.85146 1.00239 0.93739 0.92995 0.91811 0.90703 0.92461 0.93931 0.92880 0.84651 0.84330 0.83721 0.81624 0.84939 0.84795 0.76508 0.90971 0.82203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.91 71.98 0.71 -2.28 16 2 C -0.11 -2.27 5.82 30.59 0.18 -2.09 16 3 C -0.10 -2.51 4.84 30.59 0.15 -2.36 16 4 C 0.17 4.15 3.20 44.17 0.14 4.29 16 5 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 6 N -0.83 -16.12 8.60 -171.80 -1.48 -17.60 16 7 C -0.21 -6.01 5.11 -19.99 -0.10 -6.12 16 8 C -0.21 -5.94 10.25 22.14 0.23 -5.71 16 9 C -0.02 -0.61 11.43 83.22 0.95 0.34 16 10 N -0.43 -14.21 2.24 -528.56 -1.18 -15.39 16 11 C 0.10 3.28 6.57 85.63 0.56 3.85 16 12 C 0.42 19.13 7.85 87.66 0.69 19.82 16 13 O -0.63 -34.90 16.01 -3.08 -0.05 -34.95 16 14 N -0.56 -27.49 5.29 -306.99 -1.62 -29.11 16 15 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 16 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 17 C -0.01 -0.29 5.50 84.93 0.47 0.18 16 18 N -0.91 -47.50 13.05 21.66 0.28 -47.22 16 19 Si 0.99 41.94 29.55 68.60 2.03 43.97 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C -0.02 -0.57 11.35 83.21 0.94 0.37 16 24 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.52 7.75 -2.39 -0.02 1.50 16 28 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.34 6.32 8.25 -89.69 -0.74 5.58 16 32 H 0.34 6.09 9.06 -89.70 -0.81 5.27 16 33 H 0.15 3.50 7.73 -2.91 -0.02 3.48 16 34 H 0.17 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.13 3.46 8.14 -2.38 -0.02 3.44 16 36 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 37 H 0.40 18.20 7.90 -92.70 -0.73 17.46 16 38 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 39 H 0.16 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -66.63 333.10 2.49 -64.14 By element: Atomic # 1 Polarization: 45.12 SS G_CDS: -1.22 Total: 43.90 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 5.73 Total: -7.74 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -4.00 Total: -109.32 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.05 Total: -34.95 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -66.63 2.49 -64.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091820597.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.210 kcal (2) G-P(sol) polarization free energy of solvation -66.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds