Wall clock time and date at job start Mon Mar 30 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 C 1.53001 * 109.46713 * 119.99903 * 2 1 3 5 5 H 1.08996 * 109.47352 * 299.99657 * 4 2 1 6 6 N 1.46905 * 109.46947 * 179.97438 * 4 2 1 7 7 C 1.50697 * 109.47213 * 59.99935 * 4 2 1 8 8 C 1.40899 * 126.29033 * 80.02410 * 7 4 2 9 9 C 1.34852 * 107.41554 * 179.97438 * 8 7 4 10 10 N 1.36344 * 108.21801 * 359.97438 * 9 8 7 11 11 C 1.46503 * 125.63429 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.46869 * 89.97775 * 11 10 9 13 13 O 1.21289 * 120.00091 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99966 * 179.97438 * 12 11 10 15 15 C 1.37101 * 119.99978 * 180.02562 * 14 12 11 16 16 H 1.07998 * 119.99798 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99822 * 180.02562 * 15 14 12 18 18 N 1.31408 * 120.00199 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99950 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47127 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47049 * 119.99736 * 19 17 15 22 22 H 1.48493 * 109.47428 * 240.00016 * 19 17 15 23 23 C 1.34854 * 126.29412 * 259.71101 * 7 4 2 24 24 H 1.09001 * 109.47291 * 60.00073 * 1 2 3 25 25 H 1.09002 * 109.47817 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47491 * 300.00036 * 1 2 3 27 27 H 1.08996 * 109.46932 * 239.99817 * 2 1 3 28 28 H 1.08999 * 109.47105 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46921 * 300.00154 * 3 2 1 30 30 H 1.08995 * 109.46836 * 59.99808 * 3 2 1 31 31 H 1.00901 * 110.99869 * 176.04901 * 6 4 2 32 32 H 1.00896 * 110.99543 * 300.00023 * 6 4 2 33 33 H 1.07997 * 126.29213 * 359.97438 * 8 7 4 34 34 H 1.08003 * 125.89003 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47441 * 209.97608 * 11 10 9 36 36 H 1.08999 * 109.47009 * 329.98329 * 11 10 9 37 37 H 0.97003 * 120.00047 * 0.02562 * 14 12 11 38 38 H 0.97000 * 120.00459 * 179.97438 * 18 17 15 39 39 H 1.07999 * 125.88847 * 0.02562 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1392 6 7 3.5089 -0.7218 1.2490 7 6 1.5375 -2.1420 1.2493 8 6 2.0800 -3.2184 0.5197 9 6 1.3398 -4.3101 0.8005 10 7 0.3606 -3.9472 1.6770 11 6 -0.6594 -4.8391 2.2343 12 6 -0.1477 -5.4501 3.5134 13 8 0.9597 -5.1680 3.9197 14 7 -0.9211 -6.3092 4.2064 15 6 -0.4558 -6.8647 5.3702 16 1 0.5306 -6.6141 5.7315 17 6 -1.2530 -7.7508 6.0844 18 7 -2.4530 -8.0561 5.6445 19 14 -0.6188 -8.5082 7.6698 20 1 0.7510 -8.0052 7.9454 21 1 -1.5177 -8.1345 8.7911 22 1 -0.5856 -9.9865 7.5336 23 6 0.4897 -2.6182 1.9521 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 3.8705 -1.1355 2.0954 32 1 3.8701 -1.1931 0.4333 33 1 2.9321 -3.1768 -0.1425 34 1 1.4958 -5.3009 0.4000 35 1 -1.5660 -4.2702 2.4407 36 1 -0.8817 -5.6296 1.5176 37 1 -1.8070 -6.5346 3.8816 38 1 -3.0094 -8.6750 6.1428 39 1 -0.1398 -2.0451 2.6166 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091825450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:56 Heat of formation + Delta-G solvation = -1.139365 kcal Electronic energy + Delta-G solvation = -19823.209843 eV Core-core repulsion = 16766.060987 eV Total energy + Delta-G solvation = -3057.148857 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.99007 -38.24365 -36.96238 -34.14510 -32.67171 -31.71345 -31.22462 -28.77102 -27.31800 -26.63438 -24.79571 -23.89670 -20.70073 -20.17757 -19.34279 -18.85152 -18.10920 -16.65945 -16.33745 -15.57394 -14.94094 -14.73193 -14.51991 -14.06667 -13.91580 -13.50262 -13.31382 -13.20199 -12.70463 -12.50196 -12.25813 -12.19535 -11.97089 -11.67109 -11.65039 -11.29150 -11.16526 -10.85023 -10.83172 -10.47604 -10.45067 -10.36962 -9.68803 -8.87595 -8.64289 -8.15173 -7.97916 -7.66048 -6.57305 -3.99116 2.63822 3.05847 3.18793 3.25156 3.29157 3.34266 3.64276 4.06948 4.72124 4.79438 4.95327 5.03363 5.14711 5.31926 5.36021 5.39117 5.46373 5.49099 5.66683 5.72602 5.77147 5.88863 5.92703 5.95603 6.03467 6.12379 6.20288 6.41912 6.45381 6.52228 6.71711 7.29405 7.36362 7.41060 7.60166 7.63804 7.72101 7.89173 8.40920 9.00643 9.32346 9.82175 10.59634 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.039085 B = 0.003623 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.206467 B = 7725.638940 C = 7888.508367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.138 4.138 4 C 0.171 3.829 5 H 0.075 0.925 6 N -0.838 5.838 7 C -0.207 4.207 8 C -0.204 4.204 9 C 0.002 3.998 10 N -0.416 5.416 11 C 0.091 3.909 12 C 0.417 3.583 13 O -0.577 6.577 14 N -0.554 5.554 15 C -0.303 4.303 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.897 5.897 19 Si 0.931 3.069 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.011 3.989 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.342 0.658 32 H 0.336 0.664 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.393 0.607 38 H 0.274 0.726 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 10.934 -11.034 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.195 4.195 4 C 0.059 3.941 5 H 0.093 0.907 6 N -0.364 5.364 7 C -0.215 4.215 8 C -0.228 4.228 9 C -0.129 4.129 10 N -0.089 5.089 11 C -0.035 4.035 12 C 0.201 3.799 13 O -0.461 6.461 14 N -0.190 5.190 15 C -0.432 4.432 16 H 0.122 0.878 17 C -0.177 4.177 18 N -0.538 5.538 19 Si 0.758 3.242 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.121 4.121 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.171 0.829 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.227 0.773 38 H 0.083 0.917 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.873 11.567 -10.547 15.915 hybrid contribution -0.554 -1.906 0.737 2.117 sum 2.319 9.661 -9.810 13.962 Atomic orbital electron populations 1.21811 0.95386 1.02115 1.00927 1.21026 0.95323 0.95883 0.97650 1.21737 1.01945 0.95422 1.00435 1.19738 0.87147 0.89512 0.97704 0.90657 1.59119 1.06925 1.62529 1.07846 1.20174 1.00212 0.96723 1.04395 1.20439 1.03063 0.92702 1.06634 1.21646 0.93032 0.99532 0.98670 1.43521 1.24061 1.07665 1.33687 1.21635 0.90608 0.94592 0.96692 1.20013 0.87617 0.85122 0.87139 1.90598 1.20796 1.64286 1.70431 1.41840 1.16686 1.38622 1.21878 1.19768 1.02447 1.22417 0.98581 0.87764 1.25302 0.95304 0.97175 0.99910 1.69607 1.08904 1.35137 1.40136 0.85766 0.79138 0.78614 0.80676 1.19117 1.20552 1.20564 1.21484 1.02317 0.83820 1.04466 0.93328 0.92116 0.93077 0.91712 0.91661 0.93867 0.93300 0.84622 0.85242 0.85706 0.82941 0.87929 0.87916 0.77304 0.91656 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.90 37.16 0.33 -1.22 16 2 C -0.08 -0.88 2.65 -90.62 -0.24 -1.12 16 3 C -0.14 -1.40 9.04 37.16 0.34 -1.06 16 4 C 0.17 2.14 2.79 -68.86 -0.19 1.95 16 5 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 6 N -0.84 -9.78 8.38 -5.65 -0.05 -9.83 16 7 C -0.21 -3.03 4.11 -104.82 -0.43 -3.46 16 8 C -0.20 -3.04 10.24 -39.78 -0.41 -3.45 16 9 C 0.00 0.03 11.43 -16.75 -0.19 -0.16 16 10 N -0.42 -7.03 2.23 -118.41 -0.26 -7.30 16 11 C 0.09 1.51 6.57 -5.19 -0.03 1.48 16 12 C 0.42 9.47 7.85 -10.98 -0.09 9.38 16 13 O -0.58 -15.63 16.01 5.55 0.09 -15.54 16 14 N -0.55 -13.42 5.29 -10.96 -0.06 -13.48 16 15 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 16 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 17 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 18 N -0.90 -23.56 13.05 55.50 0.72 -22.83 16 19 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.01 0.18 10.65 -16.75 -0.18 0.00 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.73 6.73 -51.93 -0.35 0.38 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.69 7.60 -51.93 -0.39 0.29 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.34 4.14 9.06 -39.29 -0.36 3.78 16 32 H 0.34 3.66 8.25 -39.29 -0.32 3.34 16 33 H 0.13 1.62 7.72 -52.49 -0.41 1.21 16 34 H 0.15 2.19 8.06 -52.48 -0.42 1.77 16 35 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.39 8.94 7.90 -40.82 -0.32 8.62 16 38 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 39 H 0.15 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -30.57 329.21 -6.84 -37.41 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -5.89 Total: 16.57 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.33 Total: -5.47 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.35 Total: -53.44 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.57 -6.84 -37.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091825450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.275 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds