Wall clock time and date at job start Mon Mar 30 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 C 1.52998 * 109.47034 * 119.99635 * 2 1 3 5 5 H 1.09001 * 109.47204 * 300.00332 * 4 2 1 6 6 N 1.46905 * 109.47034 * 60.00154 * 4 2 1 7 7 C 1.50698 * 109.47049 * 179.97438 * 4 2 1 8 8 C 1.40884 * 126.29560 * 279.69000 * 7 4 2 9 9 C 1.34855 * 107.41958 * 179.83087 * 8 7 4 10 10 N 1.36340 * 108.21741 * 0.43379 * 9 8 7 11 11 C 1.46501 * 125.63877 * 179.69165 * 10 9 8 12 12 C 1.50697 * 109.46962 * 270.04013 * 11 10 9 13 13 O 1.21296 * 119.99881 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00167 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99996 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00145 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99976 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00075 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99742 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47313 * 90.00095 * 19 17 15 21 21 H 1.48509 * 109.46791 * 210.00530 * 19 17 15 22 22 H 1.48499 * 109.47312 * 330.00084 * 19 17 15 23 23 C 1.34855 * 126.28675 * 100.00186 * 7 4 2 24 24 H 1.09001 * 109.47396 * 300.00151 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.00049 * 1 2 3 26 26 H 1.08999 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47396 * 239.99849 * 2 1 3 28 28 H 1.09008 * 109.46838 * 299.99492 * 3 2 1 29 29 H 1.08991 * 109.47090 * 59.99661 * 3 2 1 30 30 H 1.09002 * 109.47241 * 179.97438 * 3 2 1 31 31 H 1.00901 * 110.99869 * 60.00199 * 6 4 2 32 32 H 1.00896 * 110.99543 * 183.95322 * 6 4 2 33 33 H 1.07999 * 126.29234 * 359.96676 * 8 7 4 34 34 H 1.07999 * 125.89127 * 180.15428 * 9 8 7 35 35 H 1.08999 * 109.47116 * 30.03494 * 11 10 9 36 36 H 1.08999 * 109.47428 * 150.04025 * 11 10 9 37 37 H 0.96994 * 119.99804 * 359.97438 * 14 12 11 38 38 H 0.96998 * 119.99690 * 180.02562 * 18 17 15 39 39 H 1.07999 * 125.89412 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 7 1.5503 -2.1062 1.2493 7 6 3.5469 -0.7217 1.2490 8 6 4.3804 -1.5959 0.5238 9 6 5.6566 -1.2582 0.7992 10 7 5.6415 -0.2137 1.6753 11 6 6.8227 0.4499 2.2329 12 6 7.2273 -0.2364 3.5121 13 8 6.5913 -1.1860 3.9183 14 7 8.2958 0.2050 4.2048 15 6 8.6642 -0.4196 5.3683 16 1 8.0980 -1.2651 5.7300 17 6 9.7656 0.0358 6.0828 18 7 10.1190 -0.5632 7.1977 19 14 10.7445 1.4987 5.4575 20 1 10.1757 2.7508 6.0176 21 1 12.1610 1.3647 5.8831 22 1 10.6753 1.5435 3.9748 23 6 4.3455 0.1108 1.9474 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.8739 -2.6041 0.4336 32 1 1.8197 -2.5849 2.0957 33 1 4.0568 -2.3893 -0.1337 34 1 6.5385 -1.7359 0.3986 35 1 7.6422 0.3953 1.5164 36 1 6.5892 1.4944 2.4391 37 1 8.8046 0.9642 3.8798 38 1 10.8876 -0.2450 7.6966 39 1 4.0154 0.8989 2.6079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091825453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:58 Heat of formation + Delta-G solvation = 6.562753 kcal Electronic energy + Delta-G solvation = -19867.453811 eV Core-core repulsion = 16810.638943 eV Total energy + Delta-G solvation = -3056.814868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.06366 -38.42763 -37.01455 -34.19712 -32.74302 -31.93108 -31.51670 -28.82702 -27.46368 -26.69456 -24.74418 -23.84678 -20.73425 -20.13293 -19.50027 -18.99932 -18.52635 -16.77810 -16.30301 -15.59832 -15.06205 -14.93845 -14.63873 -14.02128 -13.87951 -13.50606 -13.32178 -13.16180 -12.79164 -12.56677 -12.49129 -12.26965 -12.16680 -12.01896 -11.77731 -11.33685 -11.28425 -10.88221 -10.86745 -10.72862 -10.50935 -10.12270 -9.74838 -8.98128 -8.68533 -8.35881 -8.05481 -7.71955 -6.45665 -3.98550 2.56040 2.90189 2.95480 3.05078 3.22069 3.25892 3.46099 3.96642 4.46084 4.69302 4.89683 4.99226 5.11481 5.23475 5.26581 5.32021 5.35400 5.43890 5.60770 5.63549 5.69562 5.74397 5.85690 5.89293 5.92751 6.08603 6.17018 6.38234 6.41510 6.47961 6.66759 7.25308 7.31372 7.37291 7.55642 7.59269 7.68221 7.95438 8.40716 8.77662 9.23474 9.59067 10.66829 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038836 B = 0.003791 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.803126 B = 7383.963271 C = 7585.781227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.145 4.145 4 C 0.171 3.829 5 H 0.076 0.924 6 N -0.838 5.838 7 C -0.205 4.205 8 C -0.202 4.202 9 C 0.002 3.998 10 N -0.419 5.419 11 C 0.089 3.911 12 C 0.425 3.575 13 O -0.559 6.559 14 N -0.580 5.580 15 C -0.310 4.310 16 H 0.120 0.880 17 C 0.045 3.955 18 N -0.874 5.874 19 Si 0.881 3.119 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.269 1.269 23 C 0.010 3.990 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.336 0.664 32 H 0.342 0.658 33 H 0.126 0.874 34 H 0.154 0.846 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.372 0.628 38 H 0.276 0.724 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 5.124 -15.053 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C -0.202 4.202 4 C 0.059 3.941 5 H 0.094 0.906 6 N -0.364 5.364 7 C -0.213 4.213 8 C -0.227 4.227 9 C -0.129 4.129 10 N -0.092 5.092 11 C -0.037 4.037 12 C 0.210 3.790 13 O -0.440 6.440 14 N -0.219 5.219 15 C -0.438 4.438 16 H 0.138 0.862 17 C -0.160 4.160 18 N -0.513 5.513 19 Si 0.707 3.293 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.195 1.195 23 C -0.121 4.121 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.171 0.829 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.205 0.795 38 H 0.087 0.913 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.372 4.947 -14.450 19.042 hybrid contribution 2.254 0.868 -0.153 2.420 sum -9.118 5.815 -14.603 18.172 Atomic orbital electron populations 1.21738 0.95117 1.02248 1.00447 1.21028 0.95474 0.95751 0.97639 1.21812 1.01691 0.95786 1.00949 1.19748 0.86824 0.89829 0.97741 0.90604 1.59113 1.65933 1.03490 1.07882 1.20196 0.95987 1.00740 1.04394 1.20456 0.92025 1.03538 1.06642 1.21655 0.98905 0.93650 0.98657 1.43483 1.05204 1.26594 1.33918 1.21637 0.88098 0.97453 0.96524 1.19919 0.84223 0.87955 0.86921 1.90641 1.54341 1.29185 1.69866 1.42162 1.26450 1.30219 1.23112 1.19431 1.12414 1.14785 0.97207 0.86228 1.25068 0.97023 0.98087 0.95777 1.69617 1.26911 1.40195 1.14597 0.86656 0.80840 0.82910 0.78891 1.19430 1.19937 1.19469 1.21497 0.82273 1.03755 1.04584 0.93283 0.93861 0.91631 0.91705 0.93319 0.93063 0.92160 0.85227 0.84555 0.85615 0.82867 0.87816 0.87819 0.79527 0.91349 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.04 37.16 0.34 -1.03 16 2 C -0.08 -0.86 2.65 -90.62 -0.24 -1.10 16 3 C -0.14 -1.49 8.90 37.16 0.33 -1.16 16 4 C 0.17 2.08 2.79 -68.86 -0.19 1.89 16 5 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 6 N -0.84 -9.59 8.37 -5.65 -0.05 -9.64 16 7 C -0.20 -2.91 4.12 -104.82 -0.43 -3.34 16 8 C -0.20 -2.92 10.24 -39.78 -0.41 -3.33 16 9 C 0.00 0.03 11.43 -16.75 -0.19 -0.16 16 10 N -0.42 -6.74 2.23 -118.41 -0.26 -7.01 16 11 C 0.09 1.38 6.57 -5.19 -0.03 1.34 16 12 C 0.43 9.25 7.85 -10.99 -0.09 9.16 16 13 O -0.56 -14.94 16.01 5.54 0.09 -14.85 16 14 N -0.58 -13.15 5.09 -10.96 -0.06 -13.20 16 15 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 16 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 17 C 0.04 1.18 5.50 -17.47 -0.10 1.09 16 18 N -0.87 -24.92 13.96 55.50 0.77 -24.14 16 19 Si 0.88 18.51 27.74 -169.99 -4.71 13.80 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.07 6.52 56.52 0.37 -4.70 16 23 C 0.01 0.16 10.63 -16.74 -0.18 -0.02 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.68 7.60 -51.93 -0.39 0.28 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.69 6.71 -51.93 -0.35 0.34 16 31 H 0.34 3.58 8.24 -39.29 -0.32 3.26 16 32 H 0.34 4.09 9.06 -39.29 -0.36 3.73 16 33 H 0.13 1.58 7.71 -52.49 -0.40 1.17 16 34 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.37 7.20 5.76 -40.82 -0.24 6.96 16 38 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -32.02 326.04 -6.49 -38.51 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -5.85 Total: 16.95 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.34 Total: -5.33 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.41 Total: -54.00 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.09 Total: -14.85 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -4.71 Total: 13.80 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.02 -6.49 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091825453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.075 kcal (2) G-P(sol) polarization free energy of solvation -32.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds