Wall clock time and date at job start Mon Mar 30 2020 05:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47133 * 2 1 4 4 C 1.52998 * 109.47034 * 119.99635 * 2 1 3 5 5 H 1.09001 * 109.47204 * 300.00332 * 4 2 1 6 6 N 1.46905 * 109.47034 * 60.00154 * 4 2 1 7 7 C 1.50698 * 109.47049 * 179.97438 * 4 2 1 8 8 C 1.40884 * 126.29560 * 279.69000 * 7 4 2 9 9 C 1.34855 * 107.41958 * 179.83087 * 8 7 4 10 10 N 1.36340 * 108.21741 * 0.43379 * 9 8 7 11 11 C 1.46501 * 125.63877 * 179.69165 * 10 9 8 12 12 C 1.50697 * 109.46962 * 270.04013 * 11 10 9 13 13 O 1.21296 * 119.99881 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00167 * 179.97438 * 12 11 10 15 15 C 1.37097 * 119.99996 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00145 * 359.97438 * 15 14 12 17 17 C 1.38958 * 119.99976 * 180.02562 * 15 14 12 18 18 N 1.31409 * 120.00075 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99742 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47313 * 90.00095 * 19 17 15 21 21 H 1.48509 * 109.46791 * 210.00530 * 19 17 15 22 22 H 1.48499 * 109.47312 * 330.00084 * 19 17 15 23 23 C 1.34855 * 126.28675 * 100.00186 * 7 4 2 24 24 H 1.09001 * 109.47396 * 300.00151 * 1 2 3 25 25 H 1.09004 * 109.47079 * 60.00049 * 1 2 3 26 26 H 1.08999 * 109.47151 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47396 * 239.99849 * 2 1 3 28 28 H 1.09008 * 109.46838 * 299.99492 * 3 2 1 29 29 H 1.08991 * 109.47090 * 59.99661 * 3 2 1 30 30 H 1.09002 * 109.47241 * 179.97438 * 3 2 1 31 31 H 1.00901 * 110.99869 * 60.00199 * 6 4 2 32 32 H 1.00896 * 110.99543 * 183.95322 * 6 4 2 33 33 H 1.07999 * 126.29234 * 359.96676 * 8 7 4 34 34 H 1.07999 * 125.89127 * 180.15428 * 9 8 7 35 35 H 1.08999 * 109.47116 * 30.03494 * 11 10 9 36 36 H 1.08999 * 109.47428 * 150.04025 * 11 10 9 37 37 H 0.96994 * 119.99804 * 359.97438 * 14 12 11 38 38 H 0.96998 * 119.99690 * 180.02562 * 18 17 15 39 39 H 1.07999 * 125.89412 * 359.97438 * 23 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 7 1.5503 -2.1062 1.2493 7 6 3.5469 -0.7217 1.2490 8 6 4.3804 -1.5959 0.5238 9 6 5.6566 -1.2582 0.7992 10 7 5.6415 -0.2137 1.6753 11 6 6.8227 0.4499 2.2329 12 6 7.2273 -0.2364 3.5121 13 8 6.5913 -1.1860 3.9183 14 7 8.2958 0.2050 4.2048 15 6 8.6642 -0.4196 5.3683 16 1 8.0980 -1.2651 5.7300 17 6 9.7656 0.0358 6.0828 18 7 10.1190 -0.5632 7.1977 19 14 10.7445 1.4987 5.4575 20 1 10.1757 2.7508 6.0176 21 1 12.1610 1.3647 5.8831 22 1 10.6753 1.5435 3.9748 23 6 4.3455 0.1108 1.9474 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.8739 -2.6041 0.4336 32 1 1.8197 -2.5849 2.0957 33 1 4.0568 -2.3893 -0.1337 34 1 6.5385 -1.7359 0.3986 35 1 7.6422 0.3953 1.5164 36 1 6.5892 1.4944 2.4391 37 1 8.8046 0.9642 3.8798 38 1 10.8876 -0.2450 7.6966 39 1 4.0154 0.8989 2.6079 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091825453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:57 Heat of formation + Delta-G solvation = -16.341440 kcal Electronic energy + Delta-G solvation = -19868.447011 eV Core-core repulsion = 16810.638943 eV Total energy + Delta-G solvation = -3057.808068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.23195 -40.16879 -38.00886 -36.13703 -34.01893 -33.66947 -32.67273 -29.92050 -28.83848 -27.60173 -26.33904 -25.02931 -21.87311 -21.55942 -21.00145 -20.40108 -19.90144 -18.08061 -17.94647 -16.83006 -16.54493 -16.14473 -15.82056 -15.49899 -15.15212 -14.85708 -14.65653 -14.46889 -14.25911 -13.83532 -13.67567 -13.55716 -13.30325 -13.07248 -12.87412 -12.74488 -12.48110 -12.35104 -12.03094 -11.74703 -11.71051 -11.59927 -11.40634 -10.73105 -10.35102 -9.69998 -9.25940 -8.86468 -8.48294 -6.11452 1.26969 1.32176 1.33881 1.43310 1.78327 2.07191 2.13170 2.18658 2.88459 3.06748 3.76664 3.91432 4.00716 4.09227 4.19678 4.22711 4.24988 4.34423 4.46935 4.65013 4.69781 4.86428 4.93130 4.98308 5.14056 5.23358 5.32993 5.34643 5.44849 5.46564 5.64300 5.64835 5.83817 6.15043 6.29504 6.40602 6.45423 6.57345 6.66447 6.77607 7.26311 7.81007 8.69068 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038836 B = 0.003791 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.803126 B = 7383.963271 C = 7585.781227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.067 0.933 6 N -0.834 5.834 7 C -0.201 4.201 8 C -0.207 4.207 9 C -0.018 4.018 10 N -0.430 5.430 11 C 0.100 3.900 12 C 0.428 3.572 13 O -0.616 6.616 14 N -0.578 5.578 15 C -0.334 4.334 16 H 0.052 0.948 17 C -0.012 4.012 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.255 1.255 21 H -0.275 1.275 22 H -0.226 1.226 23 C -0.013 4.013 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.341 0.659 32 H 0.339 0.661 33 H 0.142 0.858 34 H 0.167 0.833 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.394 0.606 38 H 0.281 0.719 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 7.616 -17.710 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.093 4.093 3 C -0.198 4.198 4 C 0.060 3.940 5 H 0.086 0.914 6 N -0.361 5.361 7 C -0.209 4.209 8 C -0.232 4.232 9 C -0.148 4.148 10 N -0.104 5.104 11 C -0.025 4.025 12 C 0.214 3.786 13 O -0.501 6.501 14 N -0.220 5.220 15 C -0.463 4.463 16 H 0.070 0.930 17 C -0.212 4.212 18 N -0.571 5.571 19 Si 0.786 3.214 20 H -0.180 1.180 21 H -0.201 1.201 22 H -0.149 1.149 23 C -0.144 4.144 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.185 0.815 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.230 0.770 38 H 0.091 0.909 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.123 7.446 -17.146 21.752 hybrid contribution 2.037 -0.052 0.699 2.154 sum -9.085 7.395 -16.447 20.192 Atomic orbital electron populations 1.21688 0.94325 1.02057 1.01009 1.20978 0.96022 0.95820 0.96528 1.21772 1.00889 0.95526 1.01662 1.19782 0.85701 0.90255 0.98260 0.91432 1.59119 1.65695 1.03281 1.07967 1.20472 0.96912 0.99990 1.03520 1.20755 0.91946 1.03777 1.06727 1.22076 0.99921 0.93838 0.98926 1.43614 1.05430 1.27111 1.34220 1.21725 0.89302 0.98137 0.93359 1.21217 0.82468 0.86754 0.88112 1.90619 1.55872 1.31842 1.71787 1.41935 1.27318 1.30794 1.21927 1.18966 1.13070 1.14370 0.99919 0.93033 1.26190 0.97708 1.01902 0.95379 1.69803 1.27922 1.42771 1.16558 0.85344 0.77878 0.77377 0.80787 1.17960 1.20056 1.14865 1.21835 0.82568 1.04662 1.05316 0.93416 0.92595 0.92198 0.91936 0.92100 0.92869 0.93294 0.84592 0.84979 0.84032 0.81523 0.83879 0.83958 0.77018 0.90915 0.82286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.04 71.98 0.65 -1.74 16 2 C -0.07 -1.47 2.65 -10.79 -0.03 -1.50 16 3 C -0.14 -2.63 8.90 71.98 0.64 -1.98 16 4 C 0.17 4.03 2.79 44.17 0.12 4.15 16 5 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 6 N -0.83 -18.37 8.37 -171.80 -1.44 -19.81 16 7 C -0.20 -5.49 4.12 -19.99 -0.08 -5.57 16 8 C -0.21 -5.72 10.24 22.14 0.23 -5.50 16 9 C -0.02 -0.52 11.43 83.21 0.95 0.43 16 10 N -0.43 -13.05 2.23 -528.55 -1.18 -14.23 16 11 C 0.10 2.78 6.57 85.63 0.56 3.34 16 12 C 0.43 18.35 7.85 87.66 0.69 19.04 16 13 O -0.62 -34.02 16.01 -3.08 -0.05 -34.07 16 14 N -0.58 -25.74 5.09 -306.98 -1.56 -27.30 16 15 C -0.33 -19.08 10.16 84.04 0.85 -18.22 16 16 H 0.05 3.57 7.39 -2.91 -0.02 3.55 16 17 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 18 N -0.93 -55.07 13.96 21.67 0.30 -54.77 16 19 Si 0.97 36.73 27.74 68.60 1.90 38.63 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 21 H -0.28 -10.51 7.11 99.48 0.71 -9.81 16 22 H -0.23 -6.93 6.52 99.48 0.65 -6.28 16 23 C -0.01 -0.39 10.63 83.21 0.88 0.49 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.06 1.14 7.60 -2.39 -0.02 1.12 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 1.03 6.71 -2.39 -0.02 1.01 16 31 H 0.34 6.87 8.24 -89.69 -0.74 6.13 16 32 H 0.34 7.96 9.06 -89.70 -0.81 7.15 16 33 H 0.14 3.33 7.71 -2.91 -0.02 3.30 16 34 H 0.17 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.14 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.39 13.90 5.76 -92.71 -0.53 13.37 16 38 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -75.34 326.04 2.84 -72.50 By element: Atomic # 1 Polarization: 47.37 SS G_CDS: -1.07 Total: 46.30 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 5.94 Total: -7.27 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -3.88 Total: -116.10 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.05 Total: -34.07 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 1.90 Total: 38.63 kcal Total: -75.34 2.84 -72.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091825453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.163 kcal (2) G-P(sol) polarization free energy of solvation -75.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds