Wall clock time and date at job start Mon Mar 30 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.06053 * 2 1 4 4 N 1.47893 * 109.91704 * 121.20519 * 2 1 3 5 5 C 1.48541 * 105.81831 * 144.68557 * 4 2 1 6 6 C 1.54936 * 103.22671 * 320.79119 * 5 4 2 7 7 C 1.53993 * 109.91677 * 238.80055 * 2 1 3 8 8 H 1.09001 * 110.39422 * 120.46299 * 7 2 1 9 9 C 1.50701 * 110.30749 * 358.33345 * 7 2 1 10 10 O 1.21273 * 119.99947 * 280.70070 * 9 7 2 11 11 N 1.34778 * 119.99755 * 100.70595 * 9 7 2 12 12 C 1.46502 * 119.99937 * 184.25519 * 11 9 7 13 13 C 1.50701 * 109.46858 * 269.99719 * 12 11 9 14 14 H 1.07995 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99488 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00466 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99783 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47071 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.46910 * 300.00537 * 17 15 13 20 20 H 1.48496 * 109.46996 * 60.00250 * 17 15 13 21 21 C 1.46497 * 120.00161 * 4.25516 * 11 9 7 22 22 C 1.53009 * 109.47074 * 274.74667 * 21 11 9 23 23 C 1.47196 * 109.47323 * 182.31973 * 22 21 11 24 24 N 5.45720 * 94.55113 * 315.65709 * 2 1 3 25 25 H 1.09000 * 109.46821 * 182.18918 * 1 2 3 26 26 H 1.09000 * 109.46973 * 302.18419 * 1 2 3 27 27 H 1.08994 * 109.47417 * 62.18744 * 1 2 3 28 28 H 1.00897 * 111.00301 * 265.19682 * 4 2 1 29 29 H 1.09002 * 110.66718 * 202.36111 * 5 4 2 30 30 H 1.08994 * 110.66507 * 79.23103 * 5 4 2 31 31 H 1.08994 * 110.72575 * 279.05886 * 6 5 4 32 32 H 1.09000 * 110.72393 * 155.76916 * 6 5 4 33 33 H 1.09001 * 109.47024 * 149.99701 * 12 11 9 34 34 H 1.09002 * 109.46829 * 29.99612 * 12 11 9 35 35 H 0.96998 * 119.99326 * 359.97438 * 16 15 13 36 36 H 1.09005 * 109.47312 * 34.74090 * 21 11 9 37 37 H 1.09000 * 109.47430 * 154.74608 * 21 11 9 38 38 H 1.09003 * 109.46712 * 302.31613 * 22 21 11 39 39 H 1.08997 * 109.46873 * 62.31547 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 7 2.0338 -0.7204 1.1893 5 6 3.2682 -1.4184 0.7471 6 6 2.9060 -1.9116 -0.6763 7 6 2.0546 -0.7500 -1.2384 8 1 2.6710 -0.0903 -1.8492 9 6 0.9045 -1.2892 -2.0494 10 8 0.3441 -2.3078 -1.7042 11 7 0.4989 -0.6394 -3.1584 12 6 -0.6768 -1.1105 -3.8946 13 6 -0.2484 -2.1072 -4.9405 14 1 0.7952 -2.3644 -5.0460 15 6 -1.1890 -2.6916 -5.7621 16 7 -2.4599 -2.3788 -5.6333 17 14 -0.6581 -3.9276 -7.0582 18 1 -1.8498 -4.4050 -7.8045 19 1 0.2893 -3.2803 -8.0009 20 1 0.0085 -5.0797 -6.3998 21 6 1.2337 0.5378 -3.6276 22 6 0.7243 1.7818 -2.8967 23 6 1.4234 2.9720 -3.4078 24 7 1.9630 3.8905 -3.8023 25 1 -0.3633 -1.0269 0.0393 26 1 -0.3633 0.5474 0.8698 27 1 -0.3634 0.4795 -0.9089 28 1 2.2312 -0.0798 1.9434 29 1 3.4889 -2.2616 1.4017 30 1 4.1097 -0.7266 0.7120 31 1 2.3215 -2.8304 -0.6291 32 1 3.8053 -2.0556 -1.2751 33 1 -1.1660 -0.2646 -4.3775 34 1 -1.3722 -1.5860 -3.2028 35 1 -2.7355 -1.7372 -4.9600 36 1 2.2968 0.4073 -3.4249 37 1 1.0804 0.6583 -4.7000 38 1 -0.3472 1.8892 -3.0659 39 1 0.9149 1.6791 -1.8285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092954911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:35 Heat of formation + Delta-G solvation = -7.880973 kcal Electronic energy + Delta-G solvation = -20930.638875 eV Core-core repulsion = 17873.197680 eV Total energy + Delta-G solvation = -3057.441195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.32387 -37.64562 -36.88091 -35.32420 -33.22473 -31.36735 -30.83162 -30.57748 -27.07631 -25.53889 -24.14425 -23.16097 -21.30104 -20.83094 -18.21370 -17.60583 -17.52843 -16.82204 -16.37468 -15.53926 -14.87532 -14.68805 -14.44761 -14.01491 -13.73391 -13.69861 -13.08705 -12.79211 -12.58126 -12.45431 -12.32124 -12.20884 -11.93488 -11.85037 -11.54300 -11.38587 -11.22976 -11.10886 -10.90019 -10.84929 -10.65212 -10.53611 -10.12009 -9.22199 -9.01240 -8.61300 -8.41873 -7.79078 -6.41733 -4.14238 2.63830 2.71884 3.20166 3.41685 3.45635 3.53687 3.63390 4.06687 4.07953 4.50904 4.60458 4.66361 4.85718 4.89572 5.07090 5.10947 5.20139 5.28816 5.33554 5.36003 5.46093 5.61727 5.70577 5.72042 5.81219 5.95484 5.99806 6.03758 6.29511 6.49814 6.69036 6.75984 7.04264 7.23850 7.27103 7.48190 7.98254 8.14073 8.38726 8.74090 8.92006 9.54887 10.95884 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.006760 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.959976 B = 4141.251537 C = 5190.716015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.086 3.914 3 H 0.052 0.948 4 N -0.663 5.663 5 C 0.041 3.959 6 C -0.112 4.112 7 C -0.128 4.128 8 H 0.090 0.910 9 C 0.524 3.476 10 O -0.522 6.522 11 N -0.595 5.595 12 C 0.236 3.764 13 C -0.607 4.607 14 H 0.052 0.948 15 C 0.021 3.979 16 N -0.908 5.908 17 Si 1.069 2.931 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.287 1.287 21 C 0.119 3.881 22 C -0.056 4.056 23 C 0.216 3.784 24 N -0.442 5.442 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.335 0.665 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.267 0.733 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.586 6.738 10.683 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.024 4.024 3 H 0.070 0.930 4 N -0.293 5.293 5 C -0.088 4.088 6 C -0.150 4.150 7 C -0.150 4.150 8 H 0.108 0.892 9 C 0.311 3.689 10 O -0.398 6.398 11 N -0.326 5.326 12 C 0.117 3.883 13 C -0.646 4.646 14 H 0.070 0.930 15 C -0.183 4.183 16 N -0.544 5.544 17 Si 0.897 3.103 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.214 1.214 21 C -0.008 4.008 22 C -0.098 4.098 23 C -0.102 4.102 24 N -0.119 5.119 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.151 0.849 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.025 5.984 9.019 14.092 hybrid contribution 1.123 1.569 1.219 2.283 sum 10.148 7.554 10.237 16.274 Atomic orbital electron populations 1.22072 0.93500 1.04475 1.01222 1.22005 0.96845 0.94661 0.88874 0.93044 1.62983 1.28180 1.30573 1.07537 1.23012 0.90933 0.98279 0.96592 1.22503 0.99086 0.98923 0.94504 1.22422 0.96971 0.98947 0.96695 0.89151 1.19898 0.84428 0.84048 0.80539 1.90683 1.56400 1.23439 1.69232 1.48042 1.31111 1.27212 1.26249 1.19382 0.82688 0.94754 0.91476 1.22230 0.96036 1.27183 1.19126 0.93001 1.25768 0.93569 0.99189 0.99791 1.70820 1.16050 1.32851 1.34712 0.83536 0.75452 0.75800 0.75514 1.20678 1.21485 1.21385 1.21315 0.96054 0.83278 1.00141 1.20066 1.00959 0.87114 1.01653 1.29052 0.93506 0.94316 0.93348 1.81211 1.09928 1.11602 1.09148 0.89992 0.92715 0.91978 0.84934 0.89871 0.94268 0.88723 0.90942 0.95922 0.94664 0.92232 0.90573 0.88648 0.86583 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.17 37.16 0.30 -1.76 16 2 C 0.09 1.01 2.99 -66.65 -0.20 0.81 16 3 H 0.05 0.49 7.70 -51.93 -0.40 0.09 16 4 N -0.66 -7.52 7.14 -103.13 -0.74 -8.25 16 5 C 0.04 0.43 7.55 -1.89 -0.01 0.41 16 6 C -0.11 -1.46 6.56 -24.87 -0.16 -1.63 16 7 C -0.13 -1.73 2.55 -90.41 -0.23 -1.96 16 8 H 0.09 1.02 5.72 -51.93 -0.30 0.72 16 9 C 0.52 9.64 4.55 -10.98 -0.05 9.59 16 10 O -0.52 -12.11 14.30 5.56 0.08 -12.03 16 11 N -0.59 -10.90 2.35 -175.05 -0.41 -11.31 16 12 C 0.24 5.56 4.42 -5.19 -0.02 5.54 16 13 C -0.61 -16.45 9.39 -34.44 -0.32 -16.78 16 14 H 0.05 1.43 7.81 -52.49 -0.41 1.02 16 15 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 16 N -0.91 -26.74 13.65 55.43 0.76 -25.98 16 17 Si 1.07 24.98 29.90 -169.99 -5.08 19.89 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.12 1.62 5.02 -4.04 -0.02 1.60 16 22 C -0.06 -0.60 5.30 -29.52 -0.16 -0.76 16 23 C 0.22 2.61 15.43 -20.76 -0.32 2.29 16 24 N -0.44 -6.44 18.54 42.15 0.78 -5.65 16 25 H 0.08 1.40 6.66 -51.93 -0.35 1.05 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.81 5.63 -51.93 -0.29 0.51 16 28 H 0.34 2.96 8.92 -39.29 -0.35 2.61 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 1.54 7.02 -51.93 -0.36 1.17 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 34 H 0.04 0.94 7.35 -51.93 -0.38 0.55 16 35 H 0.27 7.73 7.22 -40.82 -0.29 7.44 16 36 H 0.08 0.89 6.14 -51.93 -0.32 0.57 16 37 H 0.10 1.40 8.04 -51.93 -0.42 0.98 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.11 0.98 4.84 -51.93 -0.25 0.73 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -33.19 316.27 -6.59 -39.78 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.45 Total: 0.93 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.29 Total: -2.14 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.39 Total: -51.20 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.19 -6.59 -39.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092954911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.900 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds