Wall clock time and date at job start Mon Mar 30 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.06053 * 2 1 4 4 N 1.47893 * 109.91704 * 121.20519 * 2 1 3 5 5 C 1.48541 * 105.81831 * 144.68557 * 4 2 1 6 6 C 1.54936 * 103.22671 * 320.79119 * 5 4 2 7 7 C 1.53993 * 109.91677 * 238.80055 * 2 1 3 8 8 H 1.09001 * 110.39422 * 120.46299 * 7 2 1 9 9 C 1.50701 * 110.30749 * 358.33345 * 7 2 1 10 10 O 1.21273 * 119.99947 * 280.70070 * 9 7 2 11 11 N 1.34778 * 119.99755 * 100.70595 * 9 7 2 12 12 C 1.46502 * 119.99937 * 184.25519 * 11 9 7 13 13 C 1.50701 * 109.46858 * 269.99719 * 12 11 9 14 14 H 1.07995 * 120.00059 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99488 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00466 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99783 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47071 * 180.02562 * 17 15 13 19 19 H 1.48498 * 109.46910 * 300.00537 * 17 15 13 20 20 H 1.48496 * 109.46996 * 60.00250 * 17 15 13 21 21 C 1.46497 * 120.00161 * 4.25516 * 11 9 7 22 22 C 1.53009 * 109.47074 * 274.74667 * 21 11 9 23 23 C 1.47196 * 109.47323 * 182.31973 * 22 21 11 24 24 N 5.45720 * 94.55113 * 315.65709 * 2 1 3 25 25 H 1.09000 * 109.46821 * 182.18918 * 1 2 3 26 26 H 1.09000 * 109.46973 * 302.18419 * 1 2 3 27 27 H 1.08994 * 109.47417 * 62.18744 * 1 2 3 28 28 H 1.00897 * 111.00301 * 265.19682 * 4 2 1 29 29 H 1.09002 * 110.66718 * 202.36111 * 5 4 2 30 30 H 1.08994 * 110.66507 * 79.23103 * 5 4 2 31 31 H 1.08994 * 110.72575 * 279.05886 * 6 5 4 32 32 H 1.09000 * 110.72393 * 155.76916 * 6 5 4 33 33 H 1.09001 * 109.47024 * 149.99701 * 12 11 9 34 34 H 1.09002 * 109.46829 * 29.99612 * 12 11 9 35 35 H 0.96998 * 119.99326 * 359.97438 * 16 15 13 36 36 H 1.09005 * 109.47312 * 34.74090 * 21 11 9 37 37 H 1.09000 * 109.47430 * 154.74608 * 21 11 9 38 38 H 1.09003 * 109.46712 * 302.31613 * 22 21 11 39 39 H 1.08997 * 109.46873 * 62.31547 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0239 0.0000 4 7 2.0338 -0.7204 1.1893 5 6 3.2682 -1.4184 0.7471 6 6 2.9060 -1.9116 -0.6763 7 6 2.0546 -0.7500 -1.2384 8 1 2.6710 -0.0903 -1.8492 9 6 0.9045 -1.2892 -2.0494 10 8 0.3441 -2.3078 -1.7042 11 7 0.4989 -0.6394 -3.1584 12 6 -0.6768 -1.1105 -3.8946 13 6 -0.2484 -2.1072 -4.9405 14 1 0.7952 -2.3644 -5.0460 15 6 -1.1890 -2.6916 -5.7621 16 7 -2.4599 -2.3788 -5.6333 17 14 -0.6581 -3.9276 -7.0582 18 1 -1.8498 -4.4050 -7.8045 19 1 0.2893 -3.2803 -8.0009 20 1 0.0085 -5.0797 -6.3998 21 6 1.2337 0.5378 -3.6276 22 6 0.7243 1.7818 -2.8967 23 6 1.4234 2.9720 -3.4078 24 7 1.9630 3.8905 -3.8023 25 1 -0.3633 -1.0269 0.0393 26 1 -0.3633 0.5474 0.8698 27 1 -0.3634 0.4795 -0.9089 28 1 2.2312 -0.0798 1.9434 29 1 3.4889 -2.2616 1.4017 30 1 4.1097 -0.7266 0.7120 31 1 2.3215 -2.8304 -0.6291 32 1 3.8053 -2.0556 -1.2751 33 1 -1.1660 -0.2646 -4.3775 34 1 -1.3722 -1.5860 -3.2028 35 1 -2.7355 -1.7372 -4.9600 36 1 2.2968 0.4073 -3.4249 37 1 1.0804 0.6583 -4.7000 38 1 -0.3472 1.8892 -3.0659 39 1 0.9149 1.6791 -1.8285 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092954911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:35 Heat of formation + Delta-G solvation = -31.816050 kcal Electronic energy + Delta-G solvation = -20931.676777 eV Core-core repulsion = 17873.197680 eV Total energy + Delta-G solvation = -3058.479098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.60150 -38.77382 -38.02857 -36.77984 -35.16643 -32.47028 -32.05468 -31.65234 -28.78670 -26.71808 -25.38573 -24.98460 -22.26585 -22.07406 -19.59333 -18.94251 -18.65576 -18.40147 -17.50569 -16.90301 -16.12064 -15.91548 -15.61593 -15.59925 -15.13896 -14.83680 -14.42632 -14.07562 -13.81926 -13.70466 -13.61213 -13.42824 -13.10552 -13.05459 -12.90341 -12.87529 -12.61938 -12.44873 -12.23103 -12.03695 -11.95669 -11.85917 -11.60372 -11.15116 -10.56197 -10.51747 -9.48652 -9.40499 -8.62402 -6.37567 1.51773 1.59698 1.60513 1.75860 1.78297 1.82920 2.21265 2.56768 2.99749 3.16594 3.23087 3.56511 3.64192 3.84811 3.91061 4.00949 4.21368 4.24550 4.35366 4.44515 4.53891 4.66449 4.69200 4.73323 4.82369 4.91627 4.94277 5.01178 5.03461 5.10860 5.24811 5.41922 5.58922 5.87739 5.90159 6.22001 6.52071 6.53863 6.56227 6.69600 7.35353 7.48843 8.73576 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.015780 B = 0.006760 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.959976 B = 4141.251537 C = 5190.716015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.090 3.910 3 H 0.094 0.906 4 N -0.683 5.683 5 C 0.050 3.950 6 C -0.119 4.119 7 C -0.121 4.121 8 H 0.123 0.877 9 C 0.521 3.479 10 O -0.582 6.582 11 N -0.596 5.596 12 C 0.249 3.751 13 C -0.615 4.615 14 H 0.044 0.956 15 C -0.030 4.030 16 N -0.934 5.934 17 Si 1.111 2.889 18 H -0.282 1.282 19 H -0.264 1.264 20 H -0.282 1.282 21 C 0.113 3.887 22 C -0.041 4.041 23 C 0.244 3.756 24 N -0.481 5.481 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.353 0.647 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.028 0.972 34 H -0.004 1.004 35 H 0.258 0.742 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.006 8.382 11.284 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 H 0.112 0.888 4 N -0.315 5.315 5 C -0.079 4.079 6 C -0.157 4.157 7 C -0.143 4.143 8 H 0.141 0.859 9 C 0.310 3.690 10 O -0.461 6.461 11 N -0.326 5.326 12 C 0.127 3.873 13 C -0.653 4.653 14 H 0.063 0.937 15 C -0.228 4.228 16 N -0.571 5.571 17 Si 0.933 3.067 18 H -0.208 1.208 19 H -0.189 1.189 20 H -0.208 1.208 21 C -0.012 4.012 22 C -0.083 4.083 23 C -0.073 4.073 24 N -0.158 5.158 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.170 0.830 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.487 7.687 9.637 16.849 hybrid contribution 0.347 1.028 1.081 1.531 sum 11.833 8.714 10.717 18.189 Atomic orbital electron populations 1.22029 0.95253 1.01697 1.02122 1.22036 0.95426 0.96421 0.88080 0.88839 1.62879 1.29106 1.31475 1.07999 1.22987 0.91434 0.98948 0.94483 1.22532 0.99053 0.97102 0.97019 1.22507 0.95013 0.99708 0.97081 0.85884 1.20826 0.84904 0.83077 0.80212 1.90659 1.58543 1.26266 1.70626 1.47961 1.30063 1.28620 1.25994 1.18879 0.84188 0.94021 0.90177 1.22580 0.95578 1.27596 1.19591 0.93747 1.27134 0.93290 1.00592 1.01807 1.70927 1.17029 1.33826 1.35336 0.82997 0.75614 0.74155 0.73897 1.20755 1.18854 1.20823 1.21544 0.97149 0.82557 0.99947 1.19943 1.00974 0.84962 1.02374 1.28996 0.92403 0.93776 0.92144 1.81260 1.11289 1.12870 1.10415 0.94703 0.90720 0.92065 0.82983 0.89640 0.91062 0.92968 0.89112 0.95442 0.98591 0.93281 0.87683 0.89713 0.86026 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 8.17 71.98 0.59 -3.30 16 2 C 0.09 1.82 2.99 45.06 0.13 1.96 16 3 H 0.09 1.19 7.70 -2.39 -0.02 1.18 16 4 N -0.68 -13.49 7.14 -480.21 -3.43 -16.92 16 5 C 0.05 0.89 7.55 86.65 0.65 1.54 16 6 C -0.12 -2.91 6.56 31.80 0.21 -2.70 16 7 C -0.12 -2.97 2.55 -10.66 -0.03 -3.00 16 8 H 0.12 2.19 5.72 -2.39 -0.01 2.17 16 9 C 0.52 19.18 4.55 87.66 0.40 19.57 16 10 O -0.58 -28.41 14.30 -3.01 -0.04 -28.45 16 11 N -0.60 -21.69 2.35 -826.13 -1.94 -23.63 16 12 C 0.25 12.09 4.42 85.63 0.38 12.47 16 13 C -0.61 -34.01 9.39 25.60 0.24 -33.77 16 14 H 0.04 2.47 7.81 -2.91 -0.02 2.44 16 15 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 16 N -0.93 -56.43 13.65 21.45 0.29 -56.14 16 17 Si 1.11 50.45 29.90 68.60 2.05 52.50 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 21 C 0.11 2.81 5.02 86.38 0.43 3.25 16 22 C -0.04 -0.75 5.30 28.79 0.15 -0.60 16 23 C 0.24 5.14 15.43 89.44 1.38 6.52 16 24 N -0.48 -12.83 18.54 20.00 0.37 -12.46 16 25 H 0.03 1.22 6.66 -2.39 -0.02 1.20 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.51 5.63 -2.39 -0.01 1.50 16 28 H 0.35 4.85 8.92 -89.70 -0.80 4.05 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.74 7.02 -2.39 -0.02 1.72 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.03 1.30 7.94 -2.39 -0.02 1.28 16 34 H 0.00 -0.22 7.35 -2.39 -0.02 -0.24 16 35 H 0.26 15.54 7.22 -92.71 -0.67 14.87 16 36 H 0.11 2.04 6.14 -2.38 -0.01 2.03 16 37 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 38 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.13 1.83 4.84 -2.39 -0.01 1.82 16 Total: -1.00 -76.83 316.27 2.67 -74.16 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.37 Total: 10.22 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 5.00 Total: 0.72 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -4.71 Total: -109.14 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.04 Total: -28.45 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.05 Total: 52.50 kcal Total: -76.83 2.67 -74.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092954911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.340 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds