Wall clock time and date at job start Mon Mar 30 2020 05:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.06304 * 2 1 4 4 N 1.47904 * 109.91465 * 238.79309 * 2 1 3 5 5 C 1.48528 * 105.82245 * 265.97740 * 4 2 1 6 6 C 1.54944 * 103.22776 * 320.79770 * 5 4 2 7 7 C 1.53994 * 109.91456 * 121.20446 * 2 1 3 8 8 H 1.09000 * 110.30926 * 359.11244 * 7 2 1 9 9 C 1.50695 * 110.30795 * 237.04324 * 7 2 1 10 10 O 1.21278 * 120.00060 * 334.81855 * 9 7 2 11 11 N 1.34778 * 120.00322 * 154.82187 * 9 7 2 12 12 C 1.46493 * 120.00517 * 174.83074 * 11 9 7 13 13 C 1.50700 * 109.47133 * 89.99904 * 12 11 9 14 14 H 1.07998 * 120.00305 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99976 * 179.72900 * 13 12 11 16 16 N 1.31517 * 120.00045 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99916 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47294 * 89.99856 * 17 15 13 19 19 H 1.48509 * 109.47093 * 209.99668 * 17 15 13 20 20 H 1.48491 * 109.47380 * 329.99728 * 17 15 13 21 21 C 1.46507 * 119.99322 * 354.83003 * 11 9 7 22 22 C 1.53001 * 109.46993 * 274.94243 * 21 11 9 23 23 C 1.47202 * 109.47040 * 180.02562 * 22 21 11 24 24 N 6.43272 * 72.29587 * 113.01556 * 2 1 3 25 25 H 1.08999 * 109.47198 * 298.79688 * 1 2 3 26 26 H 1.09004 * 109.47253 * 58.79478 * 1 2 3 27 27 H 1.08998 * 109.47524 * 178.79379 * 1 2 3 28 28 H 1.00896 * 111.00182 * 26.49552 * 4 2 1 29 29 H 1.09001 * 110.66346 * 79.22850 * 5 4 2 30 30 H 1.08996 * 110.66795 * 202.36141 * 5 4 2 31 31 H 1.08995 * 110.72062 * 279.05556 * 6 5 4 32 32 H 1.08993 * 110.72418 * 155.77106 * 6 5 4 33 33 H 1.09003 * 109.46818 * 329.99743 * 12 11 9 34 34 H 1.09003 * 109.47369 * 210.00013 * 12 11 9 35 35 H 0.96998 * 119.99751 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.47558 * 34.94715 * 21 11 9 37 37 H 1.08996 * 109.46633 * 154.94694 * 21 11 9 38 38 H 1.08995 * 109.47043 * 300.00480 * 22 21 11 39 39 H 1.08996 * 109.47063 * 60.00714 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 7 2.0338 -0.7205 -1.1894 5 6 2.2660 -2.1193 -0.7472 6 6 2.8535 -1.9483 0.6762 7 6 2.0545 -0.7501 1.2384 8 1 1.2224 -1.1012 1.8486 9 6 2.9556 0.1451 2.0494 10 8 3.5358 1.0662 1.5148 11 7 3.1167 -0.0779 3.3688 12 6 4.0779 0.7195 4.1345 13 6 3.3913 1.9443 4.6819 14 1 2.3436 2.1117 4.4800 15 6 4.0991 2.8480 5.4456 16 7 5.3734 2.6409 5.6968 17 14 3.2483 4.3665 6.1235 18 1 2.6794 4.0598 7.4605 19 1 4.2322 5.4721 6.2460 20 1 2.1570 4.7749 5.2031 21 6 2.3305 -1.1178 4.0372 22 6 0.9733 -0.5447 4.4503 23 6 0.1836 -1.5895 5.1224 24 7 -0.4262 -2.3960 5.6403 25 1 -0.3633 0.4950 0.9006 26 1 -0.3634 0.5325 -0.8790 27 1 -0.3634 -1.0274 -0.0216 28 1 1.3644 -0.6860 -1.9435 29 1 1.3274 -2.6724 -0.7121 30 1 2.9821 -2.6159 -1.4019 31 1 3.9171 -1.7146 0.6290 32 1 2.6803 -2.8424 1.2750 33 1 4.8981 1.0230 3.4839 34 1 4.4695 0.1235 4.9589 35 1 5.8712 3.2765 6.2344 36 1 2.1793 -1.9542 3.3547 37 1 2.8637 -1.4634 4.9228 38 1 1.1246 0.2915 5.1327 39 1 0.4401 -0.1991 3.5647 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092954912.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:37 Heat of formation + Delta-G solvation = -11.459551 kcal Electronic energy + Delta-G solvation = -20713.558024 eV Core-core repulsion = 17655.961650 eV Total energy + Delta-G solvation = -3057.596373 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06816 -37.76585 -36.73448 -35.19372 -32.87950 -31.18773 -30.79866 -30.52369 -27.39952 -25.92238 -23.96091 -23.14128 -21.29970 -20.49313 -18.43879 -17.55428 -16.86910 -16.40818 -16.27797 -15.53465 -14.88927 -14.56821 -14.37372 -14.00567 -13.69323 -13.40709 -13.02623 -12.75635 -12.68083 -12.48335 -12.32295 -12.29216 -12.09719 -11.66062 -11.57942 -11.41367 -11.23723 -11.07545 -10.84969 -10.79461 -10.66715 -10.56201 -10.16435 -9.67061 -8.93458 -8.47634 -8.47124 -7.83862 -6.09015 -4.13922 2.78294 2.88398 3.26948 3.28513 3.35515 3.38634 3.68573 4.21161 4.22024 4.40778 4.64094 4.80843 4.90056 5.04590 5.14134 5.23747 5.25369 5.29448 5.34396 5.40727 5.47349 5.53941 5.58133 5.82013 5.88081 5.91772 5.98365 6.12058 6.15948 6.35795 6.83242 6.96607 7.32873 7.37386 7.44473 7.64157 7.86446 8.16456 8.28154 8.84089 9.00478 9.51629 10.99175 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.006583 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.295672 B = 4252.397529 C = 5102.848664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.108 0.892 4 N -0.662 5.662 5 C 0.039 3.961 6 C -0.109 4.109 7 C -0.122 4.122 8 H 0.091 0.909 9 C 0.516 3.484 10 O -0.521 6.521 11 N -0.598 5.598 12 C 0.245 3.755 13 C -0.527 4.527 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.123 3.877 22 C -0.054 4.054 23 C 0.219 3.781 24 N -0.451 5.451 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.334 0.666 29 H 0.039 0.961 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 -9.205 -8.986 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 H 0.126 0.874 4 N -0.291 5.291 5 C -0.091 4.091 6 C -0.147 4.147 7 C -0.145 4.145 8 H 0.110 0.890 9 C 0.302 3.698 10 O -0.397 6.397 11 N -0.330 5.330 12 C 0.127 3.873 13 C -0.566 4.566 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.003 4.003 22 C -0.096 4.096 23 C -0.099 4.099 24 N -0.129 5.129 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.150 0.850 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.147 0.853 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.052 -9.578 -8.369 15.054 hybrid contribution -1.246 0.861 0.506 1.597 sum -9.298 -8.718 -7.863 14.976 Atomic orbital electron populations 1.22502 0.96664 1.01571 1.02850 1.22314 0.92284 1.00459 0.88285 0.87436 1.63252 1.47822 1.10349 1.07634 1.23025 0.99240 0.90675 0.96141 1.22410 1.00893 0.96172 0.95223 1.22334 0.98680 0.96492 0.96952 0.89043 1.20079 0.82728 0.84769 0.82259 1.90696 1.47987 1.30636 1.70358 1.48212 1.40818 1.36178 1.07792 1.19359 0.87563 0.89747 0.90679 1.21406 0.96792 1.06639 1.31738 0.92203 1.24923 0.94800 0.98026 0.96229 1.69921 1.07619 1.36851 1.38781 0.86555 0.79400 0.82731 0.79101 1.20680 1.21130 1.19823 1.21255 0.90009 0.90298 0.98746 1.20030 0.94259 0.94044 1.01244 1.29259 0.93443 0.93997 0.93200 1.81185 1.10305 1.11177 1.10232 0.91575 0.92145 0.92942 0.84970 0.94239 0.90057 0.90042 0.90659 0.93789 0.94826 0.92674 0.91090 0.89299 0.85250 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 8.93 37.16 0.33 -1.46 16 2 C 0.08 1.00 3.55 -66.64 -0.24 0.77 16 3 H 0.11 1.79 6.76 -51.93 -0.35 1.44 16 4 N -0.66 -7.96 7.38 -103.13 -0.76 -8.72 16 5 C 0.04 0.40 7.54 -1.90 -0.01 0.38 16 6 C -0.11 -1.27 6.37 -24.87 -0.16 -1.43 16 7 C -0.12 -1.63 2.10 -90.42 -0.19 -1.82 16 8 H 0.09 1.01 5.18 -51.93 -0.27 0.74 16 9 C 0.52 9.51 6.63 -10.99 -0.07 9.44 16 10 O -0.52 -12.23 15.24 5.56 0.08 -12.15 16 11 N -0.60 -10.90 2.47 -175.06 -0.43 -11.33 16 12 C 0.25 5.79 5.16 -5.20 -0.03 5.77 16 13 C -0.53 -13.56 9.18 -34.44 -0.32 -13.88 16 14 H 0.06 1.49 7.41 -52.49 -0.39 1.10 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 17 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 C 0.12 1.65 5.02 -4.04 -0.02 1.63 16 22 C -0.05 -0.67 5.80 -29.52 -0.17 -0.84 16 23 C 0.22 2.85 15.43 -20.76 -0.32 2.53 16 24 N -0.45 -6.91 18.54 42.15 0.78 -6.13 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.33 3.27 8.43 -39.29 -0.33 2.94 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.13 7.86 -51.93 -0.41 0.72 16 32 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 33 H 0.04 1.20 7.50 -51.93 -0.39 0.82 16 34 H 0.03 0.80 7.86 -51.93 -0.41 0.40 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.07 0.76 6.22 -51.93 -0.32 0.44 16 37 H 0.09 1.18 7.84 -51.93 -0.41 0.77 16 38 H 0.13 1.79 7.53 -51.93 -0.39 1.40 16 39 H 0.10 1.10 7.22 -51.93 -0.37 0.73 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -31.78 325.67 -6.70 -38.48 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.70 Total: 1.10 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.29 Total: 2.68 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.32 Total: -50.80 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.78 -6.70 -38.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092954912.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.018 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds