Wall clock time and date at job start Mon Mar 30 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47551 * 352.24057 * 3 2 1 5 5 C 1.37100 * 120.00161 * 263.70549 * 4 3 2 6 6 H 1.07998 * 120.00442 * 194.98808 * 5 4 3 7 7 C 1.38953 * 119.99691 * 14.98542 * 5 4 3 8 8 N 1.31414 * 119.99979 * 19.09664 * 7 5 4 9 9 Si 1.86804 * 119.99915 * 199.09536 * 7 5 4 10 10 H 1.48499 * 109.46877 * 94.97989 * 9 7 5 11 11 H 1.48497 * 109.47042 * 214.97519 * 9 7 5 12 12 H 1.48492 * 109.47182 * 334.97668 * 9 7 5 13 13 C 1.34774 * 120.00293 * 83.69795 * 4 3 2 14 14 O 1.21296 * 120.00215 * 184.23680 * 13 4 3 15 15 C 1.50701 * 119.99935 * 4.24963 * 13 4 3 16 16 C 1.53002 * 109.47402 * 147.52063 * 15 13 4 17 17 C 1.53001 * 109.46946 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47170 * 299.99830 * 17 16 15 19 19 C 1.53001 * 109.47170 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.47205 * 175.00137 * 19 18 17 21 21 C 1.53002 * 109.47047 * 60.00232 * 18 17 16 22 22 C 1.52996 * 109.47199 * 299.99708 * 21 18 17 23 23 H 1.09004 * 109.47060 * 232.23551 * 3 2 1 24 24 H 1.09002 * 109.46434 * 112.24155 * 3 2 1 25 25 H 0.96996 * 119.99586 * 180.02562 * 8 7 5 26 26 H 1.08996 * 109.47645 * 27.51517 * 15 13 4 27 27 H 1.09004 * 109.47126 * 59.99815 * 16 15 13 28 28 H 1.08995 * 109.47123 * 299.99709 * 16 15 13 29 29 H 1.08998 * 109.46671 * 180.02562 * 17 16 15 30 30 H 1.08995 * 109.47234 * 60.00274 * 17 16 15 31 31 H 1.09004 * 109.47437 * 300.00081 * 18 17 16 32 32 H 1.09002 * 109.46839 * 55.00279 * 19 18 17 33 33 H 1.09000 * 109.46830 * 295.00463 * 19 18 17 34 34 H 1.00896 * 110.99643 * 180.02562 * 20 19 18 35 35 H 1.00899 * 110.99965 * 303.95441 * 20 19 18 36 36 H 1.08995 * 109.46930 * 59.99817 * 21 18 17 37 37 H 1.08995 * 109.47123 * 179.97438 * 21 18 17 38 38 H 1.09005 * 109.47327 * 300.00466 * 22 21 18 39 39 H 1.08999 * 109.47663 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3676 0.1865 5 6 3.4485 -1.8055 1.4372 6 1 4.0281 -2.7098 1.5497 7 6 3.0591 -1.0857 2.5602 8 7 2.0684 -0.2261 2.4786 9 14 3.9437 -1.3400 4.1857 10 1 5.0086 -0.3159 4.3351 11 1 2.9735 -1.2117 5.3026 12 1 4.5521 -2.6943 4.2116 13 6 3.2013 -2.1960 -0.8715 14 8 3.5325 -3.3512 -0.7068 15 6 2.9067 -1.6871 -2.2590 16 6 3.7964 -2.4148 -3.2689 17 6 3.4967 -1.8984 -4.6776 18 6 2.0266 -2.1572 -5.0136 19 6 1.7271 -1.6414 -6.4226 20 7 0.3501 -1.9959 -6.7914 21 6 1.1369 -1.4294 -4.0037 22 6 1.4365 -1.9457 -2.5950 23 1 2.9711 0.6302 0.8124 24 1 2.9711 0.3898 -0.9513 25 1 1.7968 0.2766 3.2625 26 1 3.1069 -0.6166 -2.3035 27 1 3.5960 -3.4853 -3.2244 28 1 4.8436 -2.2309 -3.0292 29 1 4.1302 -2.4172 -5.3970 30 1 3.6967 -0.8279 -4.7224 31 1 1.8266 -3.2277 -4.9688 32 1 2.4210 -2.0946 -7.1305 33 1 1.8416 -0.5576 -6.4447 34 1 0.1279 -1.6664 -7.7188 35 1 0.2003 -2.9909 -6.7160 36 1 1.3370 -0.3589 -4.0485 37 1 0.0897 -1.6133 -4.2434 38 1 1.2366 -3.0164 -2.5502 39 1 0.8031 -1.4270 -1.8755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093424714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:18 Heat of formation + Delta-G solvation = -18.152861 kcal Electronic energy + Delta-G solvation = -20816.490633 eV Core-core repulsion = 17758.604016 eV Total energy + Delta-G solvation = -3057.886617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.61327 -37.78833 -35.76750 -34.57899 -34.10390 -31.84933 -30.53027 -30.13946 -27.43398 -25.60265 -24.11481 -22.34055 -21.37627 -19.85646 -18.76866 -17.83932 -16.44186 -16.25074 -16.00344 -14.90187 -14.76773 -14.51127 -14.23928 -14.01504 -13.68679 -13.26672 -13.14067 -12.83373 -12.30262 -12.06946 -12.02516 -11.84479 -11.65343 -11.44000 -11.23572 -11.13484 -10.87111 -10.75477 -10.55115 -10.41683 -10.36035 -10.24986 -9.86423 -9.73831 -9.22915 -8.77126 -8.41379 -8.02505 -6.46100 -3.96161 3.11464 3.23555 3.28291 3.59253 3.82358 4.03629 4.14040 4.42632 4.68242 4.87980 4.92306 4.98381 5.09402 5.25119 5.34211 5.49171 5.55031 5.64892 5.67952 5.78765 5.79507 5.83201 5.88885 6.03381 6.24289 6.29452 6.37069 6.40673 6.52473 6.59305 6.64212 6.70919 6.80262 7.00121 7.28705 7.49328 7.94005 8.32902 8.76538 9.04545 9.24491 9.79896 10.58991 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032784 B = 0.005336 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.874205 B = 5246.440726 C = 5813.833925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.249 3.751 3 C 0.216 3.784 4 N -0.446 5.446 5 C -0.309 4.309 6 H 0.108 0.892 7 C 0.029 3.971 8 N -0.883 5.883 9 Si 0.929 3.071 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.460 3.540 14 O -0.575 6.575 15 C -0.102 4.102 16 C -0.096 4.096 17 C -0.112 4.112 18 C -0.086 4.086 19 C 0.066 3.934 20 N -0.850 5.850 21 C -0.099 4.099 22 C -0.111 4.111 23 H 0.135 0.865 24 H 0.082 0.918 25 H 0.272 0.728 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.337 0.663 35 H 0.339 0.661 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 1.945 -14.212 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.069 4.069 3 C 0.088 3.912 4 N -0.166 5.166 5 C -0.436 4.436 6 H 0.126 0.874 7 C -0.174 4.174 8 N -0.523 5.523 9 Si 0.755 3.245 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.249 3.751 14 O -0.458 6.458 15 C -0.123 4.123 16 C -0.134 4.134 17 C -0.150 4.150 18 C -0.105 4.105 19 C -0.065 4.065 20 N -0.379 5.379 21 C -0.136 4.136 22 C -0.149 4.149 23 H 0.153 0.847 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.000 1.945 -13.342 13.520 hybrid contribution 1.083 -0.506 0.309 1.235 sum 2.082 1.439 -13.033 13.277 Atomic orbital electron populations 1.80909 1.13552 1.08530 1.12459 1.29348 0.95406 0.92375 0.89743 1.18888 0.81580 0.87921 1.02777 1.43692 1.56465 1.08983 1.07423 1.19792 1.31635 1.11320 0.80856 0.87416 1.25260 0.95377 0.96989 0.99737 1.69873 1.23827 1.27182 1.31449 0.85859 0.78931 0.79011 0.80671 1.20236 1.21099 1.19355 1.20180 0.83005 0.85985 0.85934 1.90522 1.51791 1.17545 1.85904 1.21267 0.96730 1.00648 0.93694 1.21305 0.98862 1.00806 0.92478 1.21570 0.95250 1.01146 0.97010 1.21201 0.95383 1.00215 0.93707 1.21871 0.88201 1.00642 0.95767 1.58684 1.25432 1.20696 1.33083 1.21429 0.99801 0.99225 0.93182 1.21525 0.94563 1.01895 0.96937 0.84743 0.89995 0.91702 0.90196 0.91059 0.91887 0.92309 0.91960 0.91439 0.95919 0.91115 0.85085 0.84843 0.92402 0.91043 0.91822 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.30 18.16 42.15 0.77 -10.54 16 2 C 0.25 5.56 11.78 -20.76 -0.24 5.32 16 3 C 0.22 4.38 4.92 -6.83 -0.03 4.35 16 4 N -0.45 -10.53 2.61 -117.94 -0.31 -10.83 16 5 C -0.31 -8.04 9.37 -14.93 -0.14 -8.18 16 6 H 0.11 2.97 7.37 -52.49 -0.39 2.58 16 7 C 0.03 0.72 4.96 -17.47 -0.09 0.63 16 8 N -0.88 -22.35 9.29 55.50 0.52 -21.84 16 9 Si 0.93 19.83 29.59 -169.99 -5.03 14.80 16 10 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 C 0.46 10.51 6.58 -10.99 -0.07 10.44 16 14 O -0.58 -15.21 15.87 5.54 0.09 -15.12 16 15 C -0.10 -1.78 1.91 -91.76 -0.18 -1.95 16 16 C -0.10 -1.47 4.83 -26.73 -0.13 -1.60 16 17 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 18 C -0.09 -1.02 2.33 -90.62 -0.21 -1.23 16 19 C 0.07 0.65 6.18 -3.82 -0.02 0.62 16 20 N -0.85 -7.93 9.08 -10.37 -0.09 -8.03 16 21 C -0.10 -1.38 5.09 -26.73 -0.14 -1.51 16 22 C -0.11 -1.92 5.16 -26.73 -0.14 -2.06 16 23 H 0.14 2.82 6.14 -51.93 -0.32 2.50 16 24 H 0.08 1.30 5.96 -51.93 -0.31 0.99 16 25 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 26 H 0.08 1.24 5.90 -51.93 -0.31 0.93 16 27 H 0.07 1.20 7.85 -51.93 -0.41 0.80 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.34 2.49 9.08 -39.29 -0.36 2.13 16 35 H 0.34 2.91 8.99 -39.29 -0.35 2.55 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.03 7.75 -51.93 -0.40 0.63 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.31 5.53 -51.93 -0.29 1.02 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -30.43 312.26 -6.53 -36.96 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -5.65 Total: 6.52 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.53 Total: 3.37 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.88 Total: -51.24 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: 0.09 Total: -15.12 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.43 -6.53 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093424714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.807 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds