Wall clock time and date at job start Mon Mar 30 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46491 * 109.47551 * 352.24057 * 3 2 1 5 5 C 1.37100 * 120.00161 * 263.70549 * 4 3 2 6 6 H 1.07998 * 120.00442 * 194.98808 * 5 4 3 7 7 C 1.38953 * 119.99691 * 14.98542 * 5 4 3 8 8 N 1.31414 * 119.99979 * 19.09664 * 7 5 4 9 9 Si 1.86804 * 119.99915 * 199.09536 * 7 5 4 10 10 H 1.48499 * 109.46877 * 94.97989 * 9 7 5 11 11 H 1.48497 * 109.47042 * 214.97519 * 9 7 5 12 12 H 1.48492 * 109.47182 * 334.97668 * 9 7 5 13 13 C 1.34774 * 120.00293 * 83.69795 * 4 3 2 14 14 O 1.21296 * 120.00215 * 184.23680 * 13 4 3 15 15 C 1.50701 * 119.99935 * 4.24963 * 13 4 3 16 16 C 1.53002 * 109.47402 * 147.52063 * 15 13 4 17 17 C 1.53001 * 109.46946 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47170 * 299.99830 * 17 16 15 19 19 C 1.53001 * 109.47170 * 180.02562 * 18 17 16 20 20 N 1.46899 * 109.47205 * 175.00137 * 19 18 17 21 21 C 1.53002 * 109.47047 * 60.00232 * 18 17 16 22 22 C 1.52996 * 109.47199 * 299.99708 * 21 18 17 23 23 H 1.09004 * 109.47060 * 232.23551 * 3 2 1 24 24 H 1.09002 * 109.46434 * 112.24155 * 3 2 1 25 25 H 0.96996 * 119.99586 * 180.02562 * 8 7 5 26 26 H 1.08996 * 109.47645 * 27.51517 * 15 13 4 27 27 H 1.09004 * 109.47126 * 59.99815 * 16 15 13 28 28 H 1.08995 * 109.47123 * 299.99709 * 16 15 13 29 29 H 1.08998 * 109.46671 * 180.02562 * 17 16 15 30 30 H 1.08995 * 109.47234 * 60.00274 * 17 16 15 31 31 H 1.09004 * 109.47437 * 300.00081 * 18 17 16 32 32 H 1.09002 * 109.46839 * 55.00279 * 19 18 17 33 33 H 1.09000 * 109.46830 * 295.00463 * 19 18 17 34 34 H 1.00896 * 110.99643 * 180.02562 * 20 19 18 35 35 H 1.00899 * 110.99965 * 303.95441 * 20 19 18 36 36 H 1.08995 * 109.46930 * 59.99817 * 21 18 17 37 37 H 1.08995 * 109.47123 * 179.97438 * 21 18 17 38 38 H 1.09005 * 109.47327 * 300.00466 * 22 21 18 39 39 H 1.08999 * 109.47663 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3676 0.1865 5 6 3.4485 -1.8055 1.4372 6 1 4.0281 -2.7098 1.5497 7 6 3.0591 -1.0857 2.5602 8 7 2.0684 -0.2261 2.4786 9 14 3.9437 -1.3400 4.1857 10 1 5.0086 -0.3159 4.3351 11 1 2.9735 -1.2117 5.3026 12 1 4.5521 -2.6943 4.2116 13 6 3.2013 -2.1960 -0.8715 14 8 3.5325 -3.3512 -0.7068 15 6 2.9067 -1.6871 -2.2590 16 6 3.7964 -2.4148 -3.2689 17 6 3.4967 -1.8984 -4.6776 18 6 2.0266 -2.1572 -5.0136 19 6 1.7271 -1.6414 -6.4226 20 7 0.3501 -1.9959 -6.7914 21 6 1.1369 -1.4294 -4.0037 22 6 1.4365 -1.9457 -2.5950 23 1 2.9711 0.6302 0.8124 24 1 2.9711 0.3898 -0.9513 25 1 1.7968 0.2766 3.2625 26 1 3.1069 -0.6166 -2.3035 27 1 3.5960 -3.4853 -3.2244 28 1 4.8436 -2.2309 -3.0292 29 1 4.1302 -2.4172 -5.3970 30 1 3.6967 -0.8279 -4.7224 31 1 1.8266 -3.2277 -4.9688 32 1 2.4210 -2.0946 -7.1305 33 1 1.8416 -0.5576 -6.4447 34 1 0.1279 -1.6664 -7.7188 35 1 0.2003 -2.9909 -6.7160 36 1 1.3370 -0.3589 -4.0485 37 1 0.0897 -1.6133 -4.2434 38 1 1.2366 -3.0164 -2.5502 39 1 0.8031 -1.4270 -1.8755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093424714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:18 Heat of formation + Delta-G solvation = -38.538915 kcal Electronic energy + Delta-G solvation = -20817.374638 eV Core-core repulsion = 17758.604016 eV Total energy + Delta-G solvation = -3058.770623 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.18233 -39.10932 -37.59343 -36.22793 -35.33421 -33.71184 -31.72433 -31.29869 -29.19306 -27.15806 -25.46826 -23.52908 -22.60673 -20.99551 -20.34719 -19.69797 -18.15906 -17.93922 -16.98712 -16.58024 -16.01910 -15.69661 -15.46293 -15.25614 -15.09812 -14.92723 -14.62752 -14.45467 -13.79149 -13.52319 -13.47029 -13.15791 -13.07608 -12.99379 -12.88293 -12.65013 -12.32209 -12.30404 -12.12376 -11.98923 -11.75783 -11.44107 -11.20326 -11.09347 -10.91642 -10.22374 -9.93571 -9.46207 -8.38663 -5.96012 1.39139 1.47144 1.57961 1.81367 2.05255 2.26831 2.35417 3.00191 3.11255 3.56161 3.67212 3.77940 3.80262 4.02330 4.16717 4.21981 4.34121 4.44446 4.57846 4.63091 4.64311 4.74362 4.83843 4.89793 4.97414 4.98228 5.13367 5.20747 5.25442 5.36085 5.38861 5.47747 5.52020 5.63766 6.03992 6.33904 6.41745 6.68792 6.99049 7.12827 7.37043 7.94682 8.63786 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032784 B = 0.005336 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.874205 B = 5246.440726 C = 5813.833925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.260 3.740 3 C 0.216 3.784 4 N -0.457 5.457 5 C -0.340 4.340 6 H 0.081 0.919 7 C 0.003 3.997 8 N -0.896 5.896 9 Si 0.989 3.011 10 H -0.258 1.258 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.450 3.550 14 O -0.621 6.621 15 C -0.092 4.092 16 C -0.093 4.093 17 C -0.102 4.102 18 C -0.083 4.083 19 C 0.072 3.928 20 N -0.862 5.862 21 C -0.089 4.089 22 C -0.105 4.105 23 H 0.131 0.869 24 H 0.133 0.867 25 H 0.275 0.725 26 H 0.108 0.892 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.349 0.651 35 H 0.342 0.658 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.588 3.537 -15.829 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.058 4.058 3 C 0.090 3.910 4 N -0.176 5.176 5 C -0.468 4.468 6 H 0.098 0.902 7 C -0.198 4.198 8 N -0.536 5.536 9 Si 0.813 3.187 10 H -0.182 1.182 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.241 3.759 14 O -0.507 6.507 15 C -0.113 4.113 16 C -0.131 4.131 17 C -0.140 4.140 18 C -0.102 4.102 19 C -0.058 4.058 20 N -0.393 5.393 21 C -0.126 4.126 22 C -0.144 4.144 23 H 0.149 0.851 24 H 0.151 0.849 25 H 0.085 0.915 26 H 0.126 0.874 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.779 3.571 -14.981 15.503 hybrid contribution 0.794 -1.059 0.852 1.575 sum 2.573 2.512 -14.128 14.579 Atomic orbital electron populations 1.80904 1.14571 1.09455 1.13641 1.29741 0.95804 0.91462 0.88772 1.19176 0.80266 0.86247 1.05313 1.43887 1.56363 1.10384 1.06969 1.19687 1.32905 1.11463 0.82711 0.90153 1.25889 0.95464 0.96364 1.02074 1.69957 1.24053 1.27304 1.32263 0.84979 0.78126 0.78771 0.76829 1.18244 1.21190 1.20348 1.21210 0.81481 0.85415 0.87788 1.90484 1.53604 1.19685 1.86947 1.21293 0.97196 1.02219 0.90597 1.21293 0.98367 0.99229 0.94260 1.21525 0.95356 1.02462 0.94649 1.21160 0.95022 0.99446 0.94561 1.21771 0.88776 1.00946 0.94345 1.58669 1.25333 1.21127 1.34140 1.21349 1.00002 1.00018 0.91248 1.21461 0.93932 1.00203 0.98787 0.85108 0.84931 0.91501 0.87412 0.93527 0.91732 0.90190 0.89935 0.92486 0.94353 0.90542 0.83754 0.84520 0.91086 0.91689 0.94237 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.01 18.16 20.01 0.36 -23.65 16 2 C 0.26 11.44 11.78 89.44 1.05 12.49 16 3 C 0.22 8.53 4.92 84.58 0.42 8.95 16 4 N -0.46 -21.73 2.61 -645.42 -1.68 -23.41 16 5 C -0.34 -18.11 9.37 84.04 0.79 -17.32 16 6 H 0.08 4.64 7.37 -2.91 -0.02 4.62 16 7 C 0.00 0.17 4.96 84.93 0.42 0.59 16 8 N -0.90 -45.05 9.29 21.66 0.20 -44.85 16 9 Si 0.99 40.63 29.59 68.60 2.03 42.66 16 10 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 11 H -0.29 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 C 0.45 20.89 6.58 87.66 0.58 21.46 16 14 O -0.62 -34.21 15.87 -3.08 -0.05 -34.26 16 15 C -0.09 -3.11 1.91 -11.54 -0.02 -3.13 16 16 C -0.09 -2.73 4.83 30.60 0.15 -2.58 16 17 C -0.10 -2.06 5.20 30.59 0.16 -1.90 16 18 C -0.08 -1.75 2.33 -10.79 -0.03 -1.78 16 19 C 0.07 1.17 6.18 86.30 0.53 1.70 16 20 N -0.86 -13.92 9.08 -186.71 -1.70 -15.62 16 21 C -0.09 -2.30 5.09 30.59 0.16 -2.14 16 22 C -0.11 -3.62 5.16 30.60 0.16 -3.46 16 23 H 0.13 5.33 6.14 -2.38 -0.01 5.31 16 24 H 0.13 3.81 5.96 -2.39 -0.01 3.79 16 25 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 26 H 0.11 3.01 5.90 -2.39 -0.01 2.99 16 27 H 0.05 1.58 7.85 -2.39 -0.02 1.56 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.35 4.23 9.08 -89.70 -0.81 3.41 16 35 H 0.34 5.20 8.99 -89.69 -0.81 4.40 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 38 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.04 1.67 5.53 -2.39 -0.01 1.65 16 Total: -1.00 -67.78 312.26 2.99 -64.79 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.54 Total: 21.45 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 4.36 Total: 12.89 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -2.81 Total: -107.53 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.05 Total: -34.26 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -67.78 2.99 -64.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093424714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.251 kcal (2) G-P(sol) polarization free energy of solvation -67.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds