Wall clock time and date at job start Mon Mar 30 2020 04:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46944 * 93.66826 * 3 2 1 5 5 C 1.37101 * 119.99736 * 263.81504 * 4 3 2 6 6 H 1.08001 * 119.99823 * 202.45328 * 5 4 3 7 7 C 1.38953 * 120.00040 * 22.45243 * 5 4 3 8 8 N 1.31416 * 119.99786 * 17.37170 * 7 5 4 9 9 Si 1.86797 * 119.99951 * 197.36517 * 7 5 4 10 10 H 1.48497 * 109.47403 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46895 * 120.00538 * 9 7 5 12 12 H 1.48496 * 109.47435 * 240.00142 * 9 7 5 13 13 C 1.34773 * 119.99853 * 83.82220 * 4 3 2 14 14 O 1.21296 * 119.99411 * 184.24851 * 13 4 3 15 15 C 1.50694 * 120.00200 * 4.24374 * 13 4 3 16 16 H 1.08998 * 108.85481 * 334.86165 * 15 13 4 17 17 C 1.54068 * 108.87702 * 216.39911 * 15 13 4 18 18 C 1.54062 * 112.82023 * 197.50564 * 17 15 13 19 19 C 1.50478 * 112.49691 * 318.28394 * 18 17 15 20 20 C 1.54236 * 108.51150 * 94.15149 * 19 18 17 21 21 C 1.45540 * 112.41173 * 280.00181 * 20 19 18 22 22 C 1.50475 * 108.87696 * 93.42006 * 15 13 4 23 23 H 1.09008 * 109.62142 * 95.21124 * 22 15 13 24 24 N 1.46890 * 109.62742 * 334.63626 * 22 15 13 25 25 H 1.09004 * 109.47053 * 333.66897 * 3 2 1 26 26 H 1.09001 * 109.46693 * 213.66730 * 3 2 1 27 27 H 0.96999 * 119.99951 * 179.97438 * 8 7 5 28 28 H 1.08997 * 108.81756 * 76.64103 * 17 15 13 29 29 H 1.09007 * 108.81750 * 318.36657 * 17 15 13 30 30 H 1.09000 * 108.88132 * 197.50300 * 18 17 15 31 31 H 1.09002 * 108.87671 * 79.06159 * 18 17 15 32 32 H 1.08998 * 109.63164 * 213.86374 * 19 18 17 33 33 H 1.09000 * 109.62457 * 334.44568 * 19 18 17 34 34 H 1.09001 * 108.89401 * 40.76454 * 20 19 18 35 35 H 1.09005 * 108.89306 * 159.34260 * 20 19 18 36 36 H 1.08999 * 108.89242 * 182.69243 * 21 20 19 37 37 H 1.08999 * 108.89382 * 301.28248 * 21 20 19 38 38 H 1.00901 * 111.00483 * 180.96183 * 24 22 15 39 39 H 1.00904 * 111.00343 * 304.91650 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.0892 -1.3784 5 6 3.4459 -1.0500 -2.0563 6 1 4.1238 -0.9927 -2.8951 7 6 2.9280 -2.2784 -1.6642 8 7 1.8661 -2.3272 -0.8916 9 14 3.7412 -3.8601 -2.2354 10 1 4.9114 -3.5346 -3.0897 11 1 4.1923 -4.6392 -1.0544 12 1 2.7665 -4.6640 -3.0157 13 6 3.2019 1.2906 -1.9800 14 8 3.5323 1.3584 -3.1451 15 6 2.9096 2.5496 -1.2051 16 1 2.2315 2.3097 -0.3861 17 6 2.2201 3.5616 -2.1401 18 6 2.2636 5.0027 -1.5970 19 6 1.9939 5.0690 -0.1181 20 6 3.3441 5.0523 0.6272 21 6 3.8979 3.7113 0.7422 22 6 4.1965 3.0788 -0.6325 23 1 4.6114 3.8337 -1.3005 24 7 5.1546 1.9771 -0.4711 25 1 2.9718 -0.9203 0.4558 26 1 2.9709 0.8561 0.5697 27 1 1.5043 -3.1847 -0.6182 28 1 1.1791 3.2666 -2.2711 29 1 2.7149 3.5369 -3.1111 30 1 1.5154 5.5991 -2.1191 31 1 3.2490 5.4246 -1.7950 32 1 1.4580 5.9890 0.1155 33 1 1.3979 4.2079 0.1843 34 1 4.0524 5.6818 0.0886 35 1 3.2000 5.4602 1.6278 36 1 4.8227 3.7594 1.3170 37 1 3.1854 3.0795 1.2726 38 1 6.0212 2.3068 -0.0731 39 1 4.7606 1.2338 0.0861 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094749133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:02 Heat of formation + Delta-G solvation = -6.595083 kcal Electronic energy + Delta-G solvation = -21606.382096 eV Core-core repulsion = 18548.996662 eV Total energy + Delta-G solvation = -3057.385434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.01734 -37.66763 -35.68784 -34.27525 -33.97222 -32.25067 -31.54605 -29.09224 -27.40629 -25.65083 -24.01638 -23.47940 -20.63172 -20.23340 -18.29035 -17.67901 -16.62236 -16.48401 -15.67273 -15.21837 -14.56484 -14.44151 -14.03315 -13.95069 -13.67734 -13.23161 -12.97604 -12.90017 -12.70023 -12.16402 -11.95035 -11.73002 -11.54297 -11.34720 -11.14213 -11.08790 -10.84097 -10.59865 -10.52672 -10.38984 -10.32603 -10.27093 -10.18994 -9.90869 -9.14239 -8.46487 -8.18850 -7.87287 -6.37827 -3.90698 3.16195 3.28167 3.34542 3.67556 3.89587 4.06452 4.19602 4.63762 4.67343 4.76391 4.96074 5.03127 5.06879 5.22886 5.33684 5.35182 5.43676 5.48894 5.56261 5.66087 5.88778 5.94769 6.03770 6.07634 6.14048 6.19070 6.19959 6.31665 6.33404 6.43349 6.50502 6.61076 6.71485 7.49135 7.57915 7.79117 8.07687 8.42848 8.79608 9.15976 9.33512 9.91975 10.68972 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.006841 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.009204 B = 4092.173021 C = 4357.006490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.246 3.754 3 C 0.225 3.775 4 N -0.447 5.447 5 C -0.298 4.298 6 H 0.105 0.895 7 C 0.026 3.974 8 N -0.887 5.887 9 Si 0.926 3.074 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.285 1.285 13 C 0.495 3.505 14 O -0.567 6.567 15 C -0.102 4.102 16 H 0.073 0.927 17 C -0.102 4.102 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.155 4.155 22 C 0.110 3.890 23 H 0.086 0.914 24 N -0.835 5.835 25 H 0.124 0.876 26 H 0.072 0.928 27 H 0.270 0.730 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.336 0.664 39 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 11.232 6.926 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C -0.073 4.073 3 C 0.097 3.903 4 N -0.168 5.168 5 C -0.425 4.425 6 H 0.122 0.878 7 C -0.176 4.176 8 N -0.527 5.527 9 Si 0.753 3.247 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.211 1.211 13 C 0.283 3.717 14 O -0.448 6.448 15 C -0.125 4.125 16 H 0.091 0.909 17 C -0.141 4.141 18 C -0.154 4.154 19 C -0.158 4.158 20 C -0.150 4.150 21 C -0.195 4.195 22 C -0.002 4.002 23 H 0.104 0.896 24 N -0.365 5.365 25 H 0.141 0.859 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.232 10.999 5.595 12.756 hybrid contribution 0.470 -0.862 0.962 1.375 sum 3.702 10.137 6.557 12.628 Atomic orbital electron populations 1.80875 1.13614 1.12220 1.08680 1.29324 0.95416 0.90170 0.92353 1.18624 0.81738 1.02869 0.87071 1.43473 1.57759 1.05858 1.09686 1.19704 1.25009 0.82732 1.15051 0.87753 1.25284 0.94969 0.99694 0.97655 1.69770 1.19342 1.26495 1.37136 0.85850 0.79261 0.81147 0.78397 1.19213 1.20724 1.21110 1.19716 0.81218 0.83839 0.86920 1.90500 1.51033 1.86268 1.16979 1.21192 0.96682 0.95747 0.98852 0.90913 1.21748 1.00373 0.92472 0.99467 1.21347 1.01594 0.96842 0.95602 1.21384 0.97019 1.01782 0.95626 1.20398 0.97077 0.97235 1.00278 1.21458 1.01041 0.97954 0.99012 1.21090 0.91884 0.92821 0.94412 0.89589 1.58956 1.06708 1.11281 1.59542 0.85863 0.91024 0.91954 0.92384 0.90250 0.92384 0.92111 0.92202 0.91516 0.92170 0.92668 0.92236 0.92040 0.85174 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.40 18.54 42.15 0.78 -10.62 16 2 C 0.25 5.50 12.71 -20.76 -0.26 5.23 16 3 C 0.23 4.45 4.00 -6.83 -0.03 4.42 16 4 N -0.45 -10.32 2.21 -117.93 -0.26 -10.58 16 5 C -0.30 -7.71 9.23 -14.93 -0.14 -7.85 16 6 H 0.10 2.90 7.48 -52.49 -0.39 2.50 16 7 C 0.03 0.65 4.93 -17.46 -0.09 0.57 16 8 N -0.89 -22.75 9.42 55.50 0.52 -22.23 16 9 Si 0.93 20.10 29.59 -169.99 -5.03 15.07 16 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.49 11.23 5.12 -10.99 -0.06 11.17 16 14 O -0.57 -15.15 15.61 5.54 0.09 -15.06 16 15 C -0.10 -1.77 1.26 -92.48 -0.12 -1.89 16 16 H 0.07 1.23 4.16 -51.93 -0.22 1.01 16 17 C -0.10 -1.68 5.15 -25.62 -0.13 -1.81 16 18 C -0.12 -1.44 5.31 -27.44 -0.15 -1.59 16 19 C -0.12 -1.35 5.61 -27.34 -0.15 -1.51 16 20 C -0.11 -1.14 5.26 -29.60 -0.16 -1.29 16 21 C -0.15 -1.72 4.89 -29.60 -0.14 -1.86 16 22 C 0.11 1.57 2.66 -68.33 -0.18 1.38 16 23 H 0.09 1.26 6.98 -51.92 -0.36 0.90 16 24 N -0.83 -12.39 7.95 -5.20 -0.04 -12.43 16 25 H 0.12 2.48 6.66 -51.93 -0.35 2.14 16 26 H 0.07 1.12 4.98 -51.93 -0.26 0.86 16 27 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.46 7.15 -51.93 -0.37 1.09 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.71 6.63 -51.93 -0.34 0.37 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.84 6.97 -51.93 -0.36 0.48 16 34 H 0.06 0.58 7.47 -51.93 -0.39 0.20 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.57 8.03 -51.93 -0.42 0.16 16 37 H 0.06 0.70 7.24 -51.93 -0.38 0.32 16 38 H 0.34 3.99 8.96 -39.29 -0.35 3.64 16 39 H 0.34 5.11 6.00 -39.29 -0.24 4.88 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -31.00 300.37 -6.26 -37.26 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.25 Total: 9.07 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -1.60 Total: 4.98 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: 1.00 Total: -55.85 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.06 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.00 -6.26 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094749133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.670 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds