Wall clock time and date at job start Mon Mar 30 2020 04:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46944 * 93.66826 * 3 2 1 5 5 C 1.37101 * 119.99736 * 263.81504 * 4 3 2 6 6 H 1.08001 * 119.99823 * 202.45328 * 5 4 3 7 7 C 1.38953 * 120.00040 * 22.45243 * 5 4 3 8 8 N 1.31416 * 119.99786 * 17.37170 * 7 5 4 9 9 Si 1.86797 * 119.99951 * 197.36517 * 7 5 4 10 10 H 1.48497 * 109.47403 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46895 * 120.00538 * 9 7 5 12 12 H 1.48496 * 109.47435 * 240.00142 * 9 7 5 13 13 C 1.34773 * 119.99853 * 83.82220 * 4 3 2 14 14 O 1.21296 * 119.99411 * 184.24851 * 13 4 3 15 15 C 1.50694 * 120.00200 * 4.24374 * 13 4 3 16 16 H 1.08998 * 108.85481 * 334.86165 * 15 13 4 17 17 C 1.54068 * 108.87702 * 216.39911 * 15 13 4 18 18 C 1.54062 * 112.82023 * 197.50564 * 17 15 13 19 19 C 1.50478 * 112.49691 * 318.28394 * 18 17 15 20 20 C 1.54236 * 108.51150 * 94.15149 * 19 18 17 21 21 C 1.45540 * 112.41173 * 280.00181 * 20 19 18 22 22 C 1.50475 * 108.87696 * 93.42006 * 15 13 4 23 23 H 1.09008 * 109.62142 * 95.21124 * 22 15 13 24 24 N 1.46890 * 109.62742 * 334.63626 * 22 15 13 25 25 H 1.09004 * 109.47053 * 333.66897 * 3 2 1 26 26 H 1.09001 * 109.46693 * 213.66730 * 3 2 1 27 27 H 0.96999 * 119.99951 * 179.97438 * 8 7 5 28 28 H 1.08997 * 108.81756 * 76.64103 * 17 15 13 29 29 H 1.09007 * 108.81750 * 318.36657 * 17 15 13 30 30 H 1.09000 * 108.88132 * 197.50300 * 18 17 15 31 31 H 1.09002 * 108.87671 * 79.06159 * 18 17 15 32 32 H 1.08998 * 109.63164 * 213.86374 * 19 18 17 33 33 H 1.09000 * 109.62457 * 334.44568 * 19 18 17 34 34 H 1.09001 * 108.89401 * 40.76454 * 20 19 18 35 35 H 1.09005 * 108.89306 * 159.34260 * 20 19 18 36 36 H 1.08999 * 108.89242 * 182.69243 * 21 20 19 37 37 H 1.08999 * 108.89382 * 301.28248 * 21 20 19 38 38 H 1.00901 * 111.00483 * 180.96183 * 24 22 15 39 39 H 1.00904 * 111.00343 * 304.91650 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0963 0.0892 -1.3784 5 6 3.4459 -1.0500 -2.0563 6 1 4.1238 -0.9927 -2.8951 7 6 2.9280 -2.2784 -1.6642 8 7 1.8661 -2.3272 -0.8916 9 14 3.7412 -3.8601 -2.2354 10 1 4.9114 -3.5346 -3.0897 11 1 4.1923 -4.6392 -1.0544 12 1 2.7665 -4.6640 -3.0157 13 6 3.2019 1.2906 -1.9800 14 8 3.5323 1.3584 -3.1451 15 6 2.9096 2.5496 -1.2051 16 1 2.2315 2.3097 -0.3861 17 6 2.2201 3.5616 -2.1401 18 6 2.2636 5.0027 -1.5970 19 6 1.9939 5.0690 -0.1181 20 6 3.3441 5.0523 0.6272 21 6 3.8979 3.7113 0.7422 22 6 4.1965 3.0788 -0.6325 23 1 4.6114 3.8337 -1.3005 24 7 5.1546 1.9771 -0.4711 25 1 2.9718 -0.9203 0.4558 26 1 2.9709 0.8561 0.5697 27 1 1.5043 -3.1847 -0.6182 28 1 1.1791 3.2666 -2.2711 29 1 2.7149 3.5369 -3.1111 30 1 1.5154 5.5991 -2.1191 31 1 3.2490 5.4246 -1.7950 32 1 1.4580 5.9890 0.1155 33 1 1.3979 4.2079 0.1843 34 1 4.0524 5.6818 0.0886 35 1 3.2000 5.4602 1.6278 36 1 4.8227 3.7594 1.3170 37 1 3.1854 3.0795 1.2726 38 1 6.0212 2.3068 -0.0731 39 1 4.7606 1.2338 0.0861 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094749133.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:02 Heat of formation + Delta-G solvation = -27.282653 kcal Electronic energy + Delta-G solvation = -21607.279176 eV Core-core repulsion = 18548.996662 eV Total energy + Delta-G solvation = -3058.282515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46559 -39.07659 -37.53395 -36.12774 -35.12200 -33.69397 -33.16642 -30.25944 -29.16435 -27.20374 -25.48743 -24.59712 -21.87709 -21.39558 -19.87391 -19.41602 -18.26804 -18.08950 -16.91218 -16.75595 -16.16041 -15.67629 -15.44902 -15.18172 -15.00122 -14.70928 -14.41896 -14.31164 -14.14659 -13.77518 -13.45113 -13.28982 -13.08977 -12.88979 -12.64514 -12.55190 -12.34313 -12.26655 -12.05040 -11.82590 -11.50083 -11.41902 -11.27289 -11.14287 -11.01224 -10.21957 -9.79634 -9.35353 -8.32538 -5.91422 1.41300 1.48842 1.61361 1.88923 2.13136 2.29130 2.38854 3.06061 3.14524 3.48608 3.55914 3.78253 3.84973 4.08454 4.18236 4.23685 4.30356 4.32125 4.39633 4.49190 4.55382 4.78951 4.84888 4.94586 5.00866 5.08338 5.22448 5.27721 5.33029 5.39780 5.42813 5.48731 5.54074 5.59380 6.15383 6.40275 6.50480 6.77115 7.00295 7.23522 7.45931 8.07413 8.71607 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.006841 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.009204 B = 4092.173021 C = 4357.006490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.255 3.745 3 C 0.229 3.771 4 N -0.454 5.454 5 C -0.322 4.322 6 H 0.076 0.924 7 C -0.001 4.001 8 N -0.902 5.902 9 Si 0.986 3.014 10 H -0.273 1.273 11 H -0.263 1.263 12 H -0.292 1.292 13 C 0.487 3.513 14 O -0.617 6.617 15 C -0.091 4.091 16 H 0.079 0.921 17 C -0.102 4.102 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.146 4.146 22 C 0.114 3.886 23 H 0.082 0.918 24 N -0.855 5.855 25 H 0.124 0.876 26 H 0.119 0.881 27 H 0.271 0.729 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.353 0.647 39 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 12.405 8.974 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.063 4.063 3 C 0.102 3.898 4 N -0.174 5.174 5 C -0.450 4.450 6 H 0.094 0.906 7 C -0.201 4.201 8 N -0.542 5.542 9 Si 0.811 3.189 10 H -0.197 1.197 11 H -0.188 1.188 12 H -0.219 1.219 13 C 0.278 3.722 14 O -0.502 6.502 15 C -0.114 4.114 16 H 0.097 0.903 17 C -0.141 4.141 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.150 4.150 21 C -0.185 4.185 22 C 0.002 3.998 23 H 0.101 0.899 24 N -0.387 5.387 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.168 0.832 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.993 12.186 7.684 14.949 hybrid contribution 0.219 -1.233 0.245 1.276 sum 4.212 10.953 7.930 14.163 Atomic orbital electron populations 1.80871 1.14687 1.13452 1.09656 1.29816 0.95934 0.89140 0.91397 1.18886 0.80175 1.04986 0.85778 1.43590 1.57561 1.05415 1.10860 1.19558 1.25587 0.84437 1.15425 0.90620 1.25872 0.95052 1.01688 0.97508 1.69855 1.19744 1.27054 1.37528 0.84978 0.77883 0.77764 0.78289 1.19727 1.18820 1.21922 1.20687 0.79598 0.85245 0.86714 1.90463 1.53092 1.87220 1.19400 1.21221 0.98713 0.93197 0.98221 0.90292 1.21755 0.98666 0.95209 0.98445 1.21303 1.02697 0.93639 0.96849 1.21407 0.97898 1.02179 0.94375 1.20412 0.96357 0.96786 1.01416 1.21360 1.02320 0.98213 0.96604 1.21056 0.89935 0.92513 0.96294 0.89946 1.58881 1.07822 1.11774 1.60265 0.85872 0.86348 0.91909 0.94195 0.92971 0.91320 0.91021 0.90180 0.92980 0.91234 0.90590 0.89893 0.92005 0.83214 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.24 18.54 20.01 0.37 -23.87 16 2 C 0.25 11.27 12.71 89.44 1.14 12.41 16 3 C 0.23 8.86 4.00 84.57 0.34 9.19 16 4 N -0.45 -21.21 2.21 -645.40 -1.43 -22.63 16 5 C -0.32 -17.08 9.23 84.04 0.78 -16.30 16 6 H 0.08 4.39 7.48 -2.91 -0.02 4.37 16 7 C 0.00 -0.03 4.93 84.93 0.42 0.39 16 8 N -0.90 -46.02 9.42 21.66 0.20 -45.82 16 9 Si 0.99 41.34 29.59 68.60 2.03 43.37 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 12 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 13 C 0.49 22.55 5.12 87.66 0.45 23.00 16 14 O -0.62 -34.42 15.61 -3.08 -0.05 -34.46 16 15 C -0.09 -3.11 1.26 -12.00 -0.02 -3.13 16 16 H 0.08 2.57 4.16 -2.39 -0.01 2.56 16 17 C -0.10 -3.38 5.15 31.31 0.16 -3.22 16 18 C -0.11 -2.47 5.31 30.14 0.16 -2.31 16 19 C -0.12 -2.34 5.61 30.20 0.17 -2.17 16 20 C -0.11 -1.81 5.26 28.73 0.15 -1.66 16 21 C -0.15 -2.69 4.89 28.73 0.14 -2.55 16 22 C 0.11 3.03 2.66 44.52 0.12 3.15 16 23 H 0.08 2.27 6.98 -2.38 -0.02 2.25 16 24 N -0.85 -24.10 7.95 -170.35 -1.35 -25.46 16 25 H 0.12 4.84 6.66 -2.39 -0.02 4.82 16 26 H 0.12 3.43 4.98 -2.39 -0.01 3.42 16 27 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.99 7.15 -2.38 -0.02 1.98 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.51 6.63 -2.39 -0.02 1.49 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.18 6.97 -2.39 -0.02 1.16 16 34 H 0.07 1.04 7.47 -2.39 -0.02 1.02 16 35 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.08 1.21 8.03 -2.39 -0.02 1.19 16 37 H 0.06 1.17 7.24 -2.39 -0.02 1.15 16 38 H 0.35 7.62 8.96 -89.69 -0.80 6.82 16 39 H 0.34 9.61 6.00 -89.69 -0.54 9.07 16 Total: -1.00 -68.96 300.37 3.53 -65.43 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.25 Total: 26.64 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 4.00 Total: 16.80 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -2.20 Total: -117.78 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.05 Total: -34.46 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -68.96 3.53 -65.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094749133.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.145 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds