Wall clock time and date at job start Mon Mar 30 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47166 * 196.22069 * 3 2 1 5 5 C 1.37095 * 119.99911 * 265.86100 * 4 3 2 6 6 H 1.07999 * 119.99967 * 213.21081 * 5 4 3 7 7 C 1.38952 * 120.00181 * 33.20694 * 5 4 3 8 8 N 1.31417 * 119.99578 * 4.56570 * 7 5 4 9 9 Si 1.86803 * 120.00235 * 184.56374 * 7 5 4 10 10 H 1.48494 * 109.46942 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46807 * 300.00208 * 9 7 5 12 12 H 1.48496 * 109.46695 * 59.99943 * 9 7 5 13 13 C 1.34778 * 119.99817 * 85.85596 * 4 3 2 14 14 O 1.21293 * 119.99450 * 175.40683 * 13 4 3 15 15 C 1.50695 * 120.00269 * 355.40342 * 13 4 3 16 16 H 1.09001 * 108.85595 * 330.53004 * 15 13 4 17 17 C 1.50472 * 108.87927 * 211.96494 * 15 13 4 18 18 C 1.54365 * 108.45861 * 145.00549 * 17 15 13 19 19 C 1.45550 * 112.33631 * 80.09835 * 18 17 15 20 20 C 1.54243 * 112.40263 * 298.03354 * 19 18 17 21 21 C 1.50465 * 108.51938 * 79.99515 * 20 19 18 22 22 C 1.54065 * 112.49883 * 265.84481 * 21 20 19 23 23 H 1.09005 * 108.72261 * 280.91363 * 22 21 20 24 24 N 1.46895 * 108.81871 * 162.57644 * 22 21 20 25 25 H 1.08997 * 109.47385 * 76.22077 * 3 2 1 26 26 H 1.09003 * 109.47092 * 316.21906 * 3 2 1 27 27 H 0.97007 * 119.99557 * 179.97438 * 8 7 5 28 28 H 1.09005 * 109.62584 * 264.78775 * 17 15 13 29 29 H 1.09004 * 109.62496 * 25.35991 * 17 15 13 30 30 H 1.09000 * 108.95386 * 319.35301 * 18 17 15 31 31 H 1.08999 * 108.90911 * 200.81545 * 18 17 15 32 32 H 1.08995 * 108.89257 * 177.28028 * 19 18 17 33 33 H 1.08998 * 108.89242 * 58.78641 * 19 18 17 34 34 H 1.08999 * 109.63316 * 320.28068 * 20 19 18 35 35 H 1.09007 * 109.62459 * 199.70065 * 20 19 18 36 36 H 1.09001 * 108.88163 * 145.06107 * 21 20 19 37 37 H 1.09008 * 108.87784 * 26.62125 * 21 20 19 38 38 H 1.00909 * 111.00062 * 55.13333 * 24 22 21 39 39 H 1.00895 * 111.00382 * 179.08789 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3272 0.3858 5 6 3.4046 2.2512 -0.5787 6 1 4.2072 2.9551 -0.4148 7 6 2.6853 2.2820 -1.7671 8 7 1.6521 1.4864 -1.9305 9 14 3.1866 3.4544 -3.1323 10 1 2.2659 3.2931 -4.2861 11 1 3.1177 4.8519 -2.6347 12 1 4.5752 3.1496 -3.5612 13 6 3.2407 1.6390 1.6890 14 8 3.7226 2.7057 2.0073 15 6 2.8041 0.6627 2.7506 16 1 1.9776 0.0671 2.3629 17 6 2.3280 1.4316 3.9532 18 6 1.1568 0.6581 4.5956 19 6 1.6130 -0.4462 5.4268 20 6 2.3930 -1.5052 4.6210 21 6 3.8005 -1.0123 4.4209 22 6 3.9818 -0.2743 3.0808 23 1 4.0773 -1.0128 2.2847 24 7 5.2164 0.5195 3.1402 25 1 2.9715 -0.2439 -0.9980 26 1 2.9717 -0.7412 0.7111 27 1 1.1497 1.5082 -2.7601 28 1 3.1423 1.5292 4.6713 29 1 1.9879 2.4202 3.6445 30 1 0.5169 0.2645 3.8059 31 1 0.5745 1.3450 5.2098 32 1 0.7476 -0.9211 5.8889 33 1 2.2591 -0.0535 6.2119 34 1 1.9157 -1.6532 3.6523 35 1 2.4093 -2.4457 5.1719 36 1 4.4799 -1.8642 4.4491 37 1 4.0555 -0.3334 5.2347 38 1 6.0073 -0.0594 3.3803 39 1 5.3754 1.0065 2.2710 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094749135.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:06 Heat of formation + Delta-G solvation = -30.220825 kcal Electronic energy + Delta-G solvation = -21546.940898 eV Core-core repulsion = 18488.530975 eV Total energy + Delta-G solvation = -3058.409923 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43077 -39.06354 -37.50162 -36.02883 -35.25853 -33.75121 -32.87451 -30.48307 -29.12402 -27.26015 -25.44801 -24.65046 -21.75248 -21.34114 -19.65912 -19.47273 -18.36635 -17.89146 -17.15752 -16.76647 -16.35092 -15.79058 -15.56578 -14.98687 -14.88264 -14.66877 -14.52999 -14.32411 -13.91711 -13.76036 -13.39960 -13.25559 -13.07884 -12.91898 -12.83386 -12.41037 -12.28050 -12.23576 -12.08580 -11.76312 -11.57908 -11.36144 -11.25865 -11.11311 -11.02310 -10.21825 -9.76617 -9.41183 -8.36107 -6.09217 1.41315 1.44054 1.52617 1.88843 2.12515 2.29446 2.39533 3.02855 3.12185 3.51851 3.60532 3.77335 3.82159 4.00394 4.17639 4.28586 4.30928 4.42155 4.45600 4.56832 4.59759 4.75891 4.83627 4.99441 5.03279 5.15482 5.23432 5.27422 5.33988 5.42937 5.45515 5.50443 5.53804 5.61899 6.13916 6.29202 6.46509 6.72349 7.11605 7.15684 7.36215 7.97852 8.66249 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.025831 B = 0.006883 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.718520 B = 4067.121969 C = 4493.929975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.261 3.739 3 C 0.228 3.772 4 N -0.465 5.465 5 C -0.332 4.332 6 H 0.081 0.919 7 C 0.002 3.998 8 N -0.902 5.902 9 Si 0.987 3.013 10 H -0.283 1.283 11 H -0.285 1.285 12 H -0.258 1.258 13 C 0.470 3.530 14 O -0.593 6.593 15 C -0.085 4.085 16 H 0.077 0.923 17 C -0.087 4.087 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.104 4.104 22 C 0.108 3.892 23 H 0.045 0.955 24 N -0.849 5.849 25 H 0.116 0.884 26 H 0.122 0.878 27 H 0.270 0.730 28 H 0.078 0.922 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.349 0.651 39 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -10.041 9.590 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.192 5.192 2 C -0.056 4.056 3 C 0.101 3.899 4 N -0.186 5.186 5 C -0.460 4.460 6 H 0.099 0.901 7 C -0.199 4.199 8 N -0.541 5.541 9 Si 0.812 3.188 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.182 1.182 13 C 0.260 3.740 14 O -0.476 6.476 15 C -0.108 4.108 16 H 0.095 0.905 17 C -0.125 4.125 18 C -0.152 4.152 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.141 4.141 22 C -0.004 4.004 23 H 0.063 0.937 24 N -0.382 5.382 25 H 0.134 0.866 26 H 0.139 0.861 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.163 0.837 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.973 -9.140 10.152 13.980 hybrid contribution 0.524 0.571 -2.088 2.228 sum 3.497 -8.569 8.064 12.275 Atomic orbital electron populations 1.80845 1.14682 1.10605 1.13055 1.29525 0.95740 0.90802 0.89554 1.18907 0.80578 0.86291 1.04105 1.43716 1.58598 1.11715 1.04605 1.19530 1.16430 1.13974 0.96034 0.90087 1.26051 0.94188 0.98531 1.01125 1.69597 1.18101 1.39137 1.27252 0.85058 0.78638 0.78001 0.77068 1.20820 1.21074 1.18204 1.21125 0.81227 0.88204 0.83437 1.90525 1.48026 1.27296 1.81728 1.21200 0.98886 0.96035 0.94641 0.90518 1.21051 0.98448 0.96759 0.96236 1.20518 0.96961 0.98207 0.99517 1.20474 1.00785 0.95591 0.98240 1.21357 0.94921 0.98700 1.00527 1.21346 0.97824 0.99496 0.95484 1.21724 0.88548 0.91779 0.98347 0.93684 1.58663 1.05125 1.33504 1.40865 0.86629 0.86101 0.91934 0.90339 0.95247 0.93729 0.91924 0.91092 0.91394 0.92455 0.89394 0.90084 0.91234 0.83708 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.50 18.54 20.01 0.37 -24.13 16 2 C 0.26 11.55 11.78 89.44 1.05 12.60 16 3 C 0.23 8.83 4.79 84.57 0.41 9.24 16 4 N -0.46 -21.37 2.57 -645.41 -1.66 -23.03 16 5 C -0.33 -17.15 9.08 84.04 0.76 -16.39 16 6 H 0.08 4.42 7.56 -2.91 -0.02 4.39 16 7 C 0.00 0.10 5.19 84.93 0.44 0.54 16 8 N -0.90 -46.29 9.14 21.66 0.20 -46.09 16 9 Si 0.99 41.37 29.56 68.60 2.03 43.40 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 13 C 0.47 21.01 4.86 87.66 0.43 21.44 16 14 O -0.59 -31.13 15.18 -3.07 -0.05 -31.18 16 15 C -0.09 -2.93 1.11 -12.00 -0.01 -2.95 16 16 H 0.08 2.64 4.43 -2.39 -0.01 2.63 16 17 C -0.09 -2.96 4.76 30.24 0.14 -2.82 16 18 C -0.11 -3.12 5.27 28.78 0.15 -2.96 16 19 C -0.11 -2.33 5.26 28.74 0.15 -2.18 16 20 C -0.12 -2.21 5.61 30.20 0.17 -2.04 16 21 C -0.10 -2.07 4.82 30.13 0.15 -1.93 16 22 C 0.11 2.85 2.83 45.64 0.13 2.98 16 23 H 0.05 1.08 6.70 -2.38 -0.02 1.06 16 24 N -0.85 -24.19 8.89 -165.69 -1.47 -25.66 16 25 H 0.12 4.53 7.21 -2.39 -0.02 4.51 16 26 H 0.12 3.54 5.48 -2.39 -0.01 3.52 16 27 H 0.27 13.72 8.31 -92.70 -0.77 12.95 16 28 H 0.08 2.62 6.97 -2.38 -0.02 2.60 16 29 H 0.03 1.20 7.34 -2.39 -0.02 1.18 16 30 H 0.04 1.33 7.47 -2.39 -0.02 1.31 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.32 7.47 -2.39 -0.02 1.30 16 34 H 0.06 1.21 6.97 -2.39 -0.02 1.19 16 35 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.50 6.61 -2.38 -0.02 1.49 16 38 H 0.35 7.61 8.97 -89.69 -0.80 6.81 16 39 H 0.34 11.55 7.01 -89.70 -0.63 10.93 16 Total: -1.00 -65.12 301.63 3.04 -62.08 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: -0.34 Total: 29.09 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 3.97 Total: 15.53 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -2.56 Total: -118.92 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.05 Total: -31.18 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -65.12 3.04 -62.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094749135.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.855 kcal (2) G-P(sol) polarization free energy of solvation -65.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds