Wall clock time and date at job start Mon Mar 30 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39878 * 125.89842 * 2 1 4 4 C 1.35311 * 107.91996 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.12469 * 180.02562 * 4 3 2 6 6 N 1.34948 * 107.74865 * 359.97438 * 4 3 2 7 7 C 1.46501 * 126.03666 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47010 * 90.00505 * 7 6 4 9 9 H 1.08998 * 109.56071 * 54.86887 * 8 7 6 10 10 C 1.53292 * 109.51402 * 174.99977 * 8 7 6 11 11 N 1.47156 * 108.38671 * 172.22443 * 10 8 7 12 12 C 1.36934 * 120.98268 * 129.44077 * 11 10 8 13 13 H 1.08000 * 120.00139 * 333.75739 * 12 11 10 14 14 C 1.38809 * 119.99700 * 153.75778 * 12 11 10 15 15 N 1.31618 * 119.99740 * 160.03088 * 14 12 11 16 16 Si 1.86800 * 120.00390 * 340.03398 * 14 12 11 17 17 H 1.48494 * 109.47162 * 91.88334 * 16 14 12 18 18 H 1.48501 * 109.47145 * 211.88618 * 16 14 12 19 19 H 1.48499 * 109.46821 * 331.88339 * 16 14 12 20 20 C 1.47153 * 118.03399 * 309.46520 * 11 10 8 21 21 C 1.53295 * 108.41971 * 50.51369 * 20 11 10 22 22 O 1.42971 * 109.51017 * 294.74538 * 8 7 6 23 23 N 1.30838 * 125.90071 * 180.30672 * 2 1 3 24 24 H 1.09002 * 109.47514 * 89.99724 * 1 2 3 25 25 H 1.08999 * 109.46990 * 210.00007 * 1 2 3 26 26 H 1.09000 * 109.47478 * 329.99690 * 1 2 3 27 27 H 1.07995 * 126.03736 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47755 * 269.97442 * 5 4 3 29 29 H 1.09001 * 109.47060 * 29.97847 * 5 4 3 30 30 H 1.09010 * 109.47031 * 149.97380 * 5 4 3 31 31 H 1.08997 * 109.47298 * 330.00290 * 7 6 4 32 32 H 1.09002 * 109.47031 * 210.00142 * 7 6 4 33 33 H 1.09000 * 109.68219 * 52.50222 * 10 8 7 34 34 H 1.09003 * 109.71037 * 291.96569 * 10 8 7 35 35 H 0.97004 * 120.00203 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.68009 * 170.26240 * 20 11 10 37 37 H 1.09001 * 109.67995 * 290.77642 * 20 11 10 38 38 H 1.09001 * 109.51182 * 67.63899 * 21 20 11 39 39 H 1.08997 * 109.51458 * 187.79376 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7154 -0.0006 5 6 4.8349 1.5990 -0.0002 6 7 3.6087 -0.6340 -0.0004 7 6 4.7899 -1.5006 -0.0013 8 6 5.2024 -1.8022 1.4408 9 1 4.3548 -2.2217 1.9827 10 6 6.3597 -2.8074 1.4429 11 7 6.8595 -2.9370 2.8209 12 6 7.0215 -4.1676 3.3992 13 1 6.4246 -5.0037 3.0659 14 6 7.9529 -4.3405 4.4138 15 7 7.8541 -5.3686 5.2296 16 14 9.3464 -3.1139 4.6214 17 1 8.9336 -2.0525 5.5743 18 1 10.5464 -3.8125 5.1479 19 1 9.6669 -2.5018 3.3070 20 6 7.1796 -1.7050 3.5592 21 6 5.9830 -0.7526 3.4541 22 8 5.6265 -0.5949 2.0785 23 7 2.2741 -1.0598 -0.0057 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9922 2.1598 -0.0004 28 1 5.1294 1.8125 -1.0277 29 1 4.6074 2.5328 0.5140 30 1 5.6511 1.0909 0.5135 31 1 5.6089 -0.9981 -0.5160 32 1 4.5559 -2.4332 -0.5148 33 1 7.1591 -2.4483 0.7947 34 1 6.0063 -3.7756 1.0880 35 1 8.5048 -5.4893 5.9388 36 1 7.3686 -1.9430 4.6059 37 1 8.0619 -1.2352 3.1244 38 1 5.1379 -1.1678 4.0034 39 1 6.2510 0.2165 3.8749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105893462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:03 Heat of formation + Delta-G solvation = 55.624708 kcal Electronic energy + Delta-G solvation = -20723.275806 eV Core-core repulsion = 17668.588424 eV Total energy + Delta-G solvation = -3054.687382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.13624 -38.80636 -34.90333 -34.18848 -32.36569 -31.58941 -31.00834 -28.89557 -27.31975 -26.81737 -25.18798 -23.21127 -22.26754 -20.29715 -20.08969 -19.10676 -17.06509 -16.48622 -16.13625 -15.72503 -15.27820 -14.34964 -14.24066 -14.08711 -13.80926 -13.70879 -13.58179 -13.23483 -12.90612 -12.62248 -12.45945 -12.39752 -12.13252 -11.84584 -11.76804 -11.60740 -11.30864 -10.94355 -10.48075 -10.36240 -10.32799 -9.89377 -9.59692 -9.46649 -8.89416 -8.64738 -8.31204 -7.09858 -6.03920 -3.42107 2.03363 2.63421 2.90523 3.23262 3.41177 3.43410 3.96685 4.43211 4.62226 4.67613 4.77540 5.07510 5.16363 5.20522 5.27131 5.42411 5.43950 5.49777 5.55360 5.58497 5.68594 5.73183 5.80524 5.85369 5.90195 5.97628 5.99207 6.09355 6.13566 6.34429 6.39626 6.43869 6.62453 6.83874 7.21071 7.52965 7.78308 7.93591 8.21259 8.78444 9.59458 9.94491 11.11625 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034516 B = 0.004950 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.022769 B = 5655.275558 C = 5995.020639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.066 3.934 3 C -0.288 4.288 4 C 0.107 3.893 5 C -0.097 4.097 6 N -0.359 5.359 7 C 0.142 3.858 8 C 0.060 3.940 9 H 0.066 0.934 10 C 0.126 3.874 11 N -0.605 5.605 12 C -0.265 4.265 13 H 0.088 0.912 14 C 0.025 3.975 15 N -0.906 5.906 16 Si 0.885 3.115 17 H -0.288 1.288 18 H -0.301 1.301 19 H -0.271 1.271 20 C 0.089 3.911 21 C 0.052 3.948 22 O -0.384 6.384 23 N -0.301 5.301 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.140 0.860 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.050 0.950 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 14.002 -10.684 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 C -0.317 4.317 4 C -0.021 4.021 5 C -0.155 4.155 6 N -0.141 5.141 7 C 0.020 3.980 8 C -0.001 4.001 9 H 0.084 0.916 10 C -0.001 4.001 11 N -0.330 5.330 12 C -0.393 4.393 13 H 0.106 0.894 14 C -0.174 4.174 15 N -0.548 5.548 16 Si 0.716 3.284 17 H -0.216 1.216 18 H -0.229 1.229 19 H -0.196 1.196 20 C -0.036 4.036 21 C -0.026 4.026 22 O -0.304 6.304 23 N -0.123 5.123 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.158 0.842 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.907 12.669 -10.644 18.339 hybrid contribution 0.917 1.202 0.525 1.601 sum -6.990 13.872 -10.119 18.539 Atomic orbital electron populations 1.20118 0.87140 1.03011 1.02501 1.22227 0.96678 0.90978 1.00062 1.21020 0.91150 0.99389 1.20176 1.21047 0.97073 0.84694 0.99297 1.20514 0.94230 0.98200 1.02557 1.48489 1.04999 1.04183 1.56397 1.21791 0.83756 0.95338 0.97122 1.23032 0.98029 0.87219 0.91800 0.91582 1.21481 0.93590 0.97377 0.87657 1.44312 1.77228 1.02187 1.09284 1.18913 1.17029 0.86740 1.16582 0.89410 1.25238 0.98147 0.96603 0.97436 1.69824 1.36629 1.31010 1.17357 0.86946 0.83120 0.80394 0.77963 1.21556 1.22948 1.19561 1.22042 0.95502 0.87964 0.98099 1.23038 0.97884 0.99636 0.82036 1.87738 1.86575 1.31200 1.24838 1.77302 0.86474 1.22739 1.25813 0.90925 0.91132 0.90764 0.84172 0.90953 0.90205 0.89288 0.88364 0.87351 0.94827 0.90727 0.92592 0.90064 0.94696 0.93181 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.45 36.00 0.38 -0.32 16 2 C 0.07 0.95 7.22 -82.41 -0.59 0.35 16 3 C -0.29 -3.88 10.65 -40.01 -0.43 -4.31 16 4 C 0.11 1.49 6.74 -82.26 -0.55 0.93 16 5 C -0.10 -1.05 9.87 36.01 0.36 -0.70 16 6 N -0.36 -5.53 3.57 -57.14 -0.20 -5.74 16 7 C 0.14 1.98 5.74 -4.04 -0.02 1.96 16 8 C 0.06 1.02 3.02 -26.58 -0.08 0.94 16 9 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 10 C 0.13 2.40 6.02 -3.53 -0.02 2.38 16 11 N -0.61 -14.28 2.84 -171.83 -0.49 -14.76 16 12 C -0.26 -7.34 10.10 -15.06 -0.15 -7.50 16 13 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 14 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 15 N -0.91 -27.54 13.97 55.49 0.78 -26.76 16 16 Si 0.89 22.05 24.28 -169.99 -4.13 17.92 16 17 H -0.29 -6.86 6.58 56.52 0.37 -6.49 16 18 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 19 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 20 C 0.09 1.93 4.38 -3.53 -0.02 1.91 16 21 C 0.05 0.95 6.99 37.31 0.26 1.21 16 22 O -0.38 -6.70 8.41 -35.23 -0.30 -6.99 16 23 N -0.30 -4.99 12.58 33.67 0.42 -4.57 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.09 1.09 5.94 -51.92 -0.31 0.78 16 31 H 0.10 1.18 7.66 -51.93 -0.40 0.78 16 32 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.38 7.96 -51.93 -0.41 0.97 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.08 1.90 4.60 -51.93 -0.24 1.66 16 37 H 0.04 0.75 6.86 -51.93 -0.36 0.39 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -32.71 311.18 -6.18 -38.89 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -5.98 Total: -0.16 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.97 Total: -2.51 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.51 Total: -51.83 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -0.30 Total: -6.99 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.13 Total: 17.92 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.71 -6.18 -38.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105893462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.513 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds