Wall clock time and date at job start Mon Mar 30 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39878 * 125.89842 * 2 1 4 4 C 1.35311 * 107.91996 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.12469 * 180.02562 * 4 3 2 6 6 N 1.34948 * 107.74865 * 359.97438 * 4 3 2 7 7 C 1.46501 * 126.03666 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47010 * 90.00505 * 7 6 4 9 9 H 1.08998 * 109.56071 * 54.86887 * 8 7 6 10 10 C 1.53292 * 109.51402 * 174.99977 * 8 7 6 11 11 N 1.47156 * 108.38671 * 172.22443 * 10 8 7 12 12 C 1.36934 * 120.98268 * 129.44077 * 11 10 8 13 13 H 1.08000 * 120.00139 * 333.75739 * 12 11 10 14 14 C 1.38809 * 119.99700 * 153.75778 * 12 11 10 15 15 N 1.31618 * 119.99740 * 160.03088 * 14 12 11 16 16 Si 1.86800 * 120.00390 * 340.03398 * 14 12 11 17 17 H 1.48494 * 109.47162 * 91.88334 * 16 14 12 18 18 H 1.48501 * 109.47145 * 211.88618 * 16 14 12 19 19 H 1.48499 * 109.46821 * 331.88339 * 16 14 12 20 20 C 1.47153 * 118.03399 * 309.46520 * 11 10 8 21 21 C 1.53295 * 108.41971 * 50.51369 * 20 11 10 22 22 O 1.42971 * 109.51017 * 294.74538 * 8 7 6 23 23 N 1.30838 * 125.90071 * 180.30672 * 2 1 3 24 24 H 1.09002 * 109.47514 * 89.99724 * 1 2 3 25 25 H 1.08999 * 109.46990 * 210.00007 * 1 2 3 26 26 H 1.09000 * 109.47478 * 329.99690 * 1 2 3 27 27 H 1.07995 * 126.03736 * 359.97438 * 3 2 1 28 28 H 1.08995 * 109.47755 * 269.97442 * 5 4 3 29 29 H 1.09001 * 109.47060 * 29.97847 * 5 4 3 30 30 H 1.09010 * 109.47031 * 149.97380 * 5 4 3 31 31 H 1.08997 * 109.47298 * 330.00290 * 7 6 4 32 32 H 1.09002 * 109.47031 * 210.00142 * 7 6 4 33 33 H 1.09000 * 109.68219 * 52.50222 * 10 8 7 34 34 H 1.09003 * 109.71037 * 291.96569 * 10 8 7 35 35 H 0.97004 * 120.00203 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.68009 * 170.26240 * 20 11 10 37 37 H 1.09001 * 109.67995 * 290.77642 * 20 11 10 38 38 H 1.09001 * 109.51182 * 67.63899 * 21 20 11 39 39 H 1.08997 * 109.51458 * 187.79376 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6141 0.7154 -0.0006 5 6 4.8349 1.5990 -0.0002 6 7 3.6087 -0.6340 -0.0004 7 6 4.7899 -1.5006 -0.0013 8 6 5.2024 -1.8022 1.4408 9 1 4.3548 -2.2217 1.9827 10 6 6.3597 -2.8074 1.4429 11 7 6.8595 -2.9370 2.8209 12 6 7.0215 -4.1676 3.3992 13 1 6.4246 -5.0037 3.0659 14 6 7.9529 -4.3405 4.4138 15 7 7.8541 -5.3686 5.2296 16 14 9.3464 -3.1139 4.6214 17 1 8.9336 -2.0525 5.5743 18 1 10.5464 -3.8125 5.1479 19 1 9.6669 -2.5018 3.3070 20 6 7.1796 -1.7050 3.5592 21 6 5.9830 -0.7526 3.4541 22 8 5.6265 -0.5949 2.0785 23 7 2.2741 -1.0598 -0.0057 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9922 2.1598 -0.0004 28 1 5.1294 1.8125 -1.0277 29 1 4.6074 2.5328 0.5140 30 1 5.6511 1.0909 0.5135 31 1 5.6089 -0.9981 -0.5160 32 1 4.5559 -2.4332 -0.5148 33 1 7.1591 -2.4483 0.7947 34 1 6.0063 -3.7756 1.0880 35 1 8.5048 -5.4893 5.9388 36 1 7.3686 -1.9430 4.6059 37 1 8.0619 -1.2352 3.1244 38 1 5.1379 -1.1678 4.0034 39 1 6.2510 0.2165 3.8749 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105893462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:02 Heat of formation + Delta-G solvation = 33.157636 kcal Electronic energy + Delta-G solvation = -20724.250051 eV Core-core repulsion = 17668.588424 eV Total energy + Delta-G solvation = -3055.661627 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.18606 -40.30922 -36.61971 -35.39783 -33.75082 -33.34032 -32.18021 -30.09728 -28.90450 -27.79304 -26.58507 -24.90797 -23.77533 -21.76867 -21.27452 -20.14718 -19.01310 -17.77618 -17.54361 -17.30005 -16.64401 -15.95515 -15.88531 -15.43557 -15.36363 -14.85138 -14.64562 -14.38747 -14.03006 -13.86536 -13.83354 -13.68269 -13.28050 -13.19356 -13.01793 -12.82414 -12.63329 -12.45228 -12.34808 -12.11008 -11.60491 -11.46771 -11.38727 -11.22523 -10.58974 -9.95241 -9.38238 -9.00936 -8.23165 -5.58357 0.97896 1.26061 1.38751 1.47971 1.59652 1.90444 2.35825 2.59658 2.93990 3.17688 3.61085 3.77818 3.88294 3.99179 4.02938 4.16985 4.24885 4.25783 4.39804 4.43526 4.53469 4.61863 4.65217 4.77236 4.81281 4.82867 4.84244 4.85049 4.99579 5.06544 5.09774 5.20132 5.45443 5.72526 5.85567 6.03388 6.07972 6.20893 6.76669 6.88441 7.48946 7.88456 8.96316 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034516 B = 0.004950 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.022769 B = 5655.275558 C = 5995.020639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.059 3.941 3 C -0.298 4.298 4 C 0.099 3.901 5 C -0.092 4.092 6 N -0.374 5.374 7 C 0.147 3.853 8 C 0.073 3.927 9 H 0.033 0.967 10 C 0.123 3.877 11 N -0.623 5.623 12 C -0.258 4.258 13 H 0.051 0.949 14 C -0.033 4.033 15 N -0.956 5.956 16 Si 0.953 3.047 17 H -0.269 1.269 18 H -0.309 1.309 19 H -0.259 1.259 20 C 0.084 3.916 21 C 0.060 3.940 22 O -0.374 6.374 23 N -0.348 5.348 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.165 0.835 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 17.318 -11.981 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C -0.327 4.327 4 C -0.029 4.029 5 C -0.150 4.150 6 N -0.155 5.155 7 C 0.025 3.975 8 C 0.013 3.987 9 H 0.051 0.949 10 C -0.003 4.003 11 N -0.348 5.348 12 C -0.387 4.387 13 H 0.069 0.931 14 C -0.228 4.228 15 N -0.602 5.602 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.238 1.238 19 H -0.183 1.183 20 C -0.041 4.041 21 C -0.018 4.018 22 O -0.293 6.293 23 N -0.171 5.171 24 H 0.107 0.893 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.183 0.817 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.657 16.032 -11.975 21.425 hybrid contribution 0.701 0.162 0.876 1.134 sum -6.955 16.194 -11.099 20.828 Atomic orbital electron populations 1.20257 0.84809 1.03794 1.03789 1.22919 0.98351 0.90851 0.98575 1.21422 0.91011 1.00368 1.19904 1.21668 0.98493 0.84408 0.98294 1.20593 0.92403 0.97989 1.04018 1.48562 1.04754 1.04899 1.57314 1.21776 0.84485 0.96376 0.94827 1.22820 0.95796 0.86595 0.93487 0.94895 1.21645 0.94749 0.98157 0.85711 1.44428 1.77657 1.01485 1.11279 1.18829 1.15934 0.87740 1.16204 0.93075 1.25913 1.00596 0.98942 0.97384 1.69966 1.37765 1.33833 1.18587 0.85854 0.79051 0.78379 0.78653 1.19577 1.23799 1.18294 1.22137 0.97450 0.87682 0.96791 1.22980 0.95754 1.00550 0.82518 1.87776 1.86206 1.30955 1.24336 1.77255 0.87479 1.24450 1.27946 0.89300 0.91678 0.88619 0.81739 0.88811 0.88598 0.90344 0.85681 0.86549 0.92538 0.91147 0.92721 0.91994 0.93435 0.94840 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.45 71.23 0.74 -0.51 16 2 C 0.06 1.59 7.22 43.10 0.31 1.90 16 3 C -0.30 -7.29 10.65 21.99 0.23 -7.06 16 4 C 0.10 2.50 6.74 41.40 0.28 2.78 16 5 C -0.09 -1.67 9.87 71.24 0.70 -0.96 16 6 N -0.37 -10.94 3.57 -334.70 -1.20 -12.14 16 7 C 0.15 3.87 5.74 86.38 0.50 4.36 16 8 C 0.07 2.44 3.02 30.69 0.09 2.53 16 9 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 10 C 0.12 4.59 6.02 86.35 0.52 5.11 16 11 N -0.62 -29.16 2.84 -697.54 -1.98 -31.14 16 12 C -0.26 -14.68 10.10 84.03 0.85 -13.83 16 13 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 14 C -0.03 -1.93 5.26 84.86 0.45 -1.49 16 15 N -0.96 -60.03 13.97 21.65 0.30 -59.72 16 16 Si 0.95 45.56 24.28 68.60 1.67 47.23 16 17 H -0.27 -11.97 6.58 99.48 0.65 -11.32 16 18 H -0.31 -15.08 7.11 99.48 0.71 -14.37 16 19 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 20 C 0.08 3.47 4.38 86.35 0.38 3.85 16 21 C 0.06 2.04 6.99 72.08 0.50 2.55 16 22 O -0.37 -12.13 8.41 -148.98 -1.25 -13.38 16 23 N -0.35 -11.36 12.58 -47.38 -0.60 -11.96 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 28 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.62 5.94 -2.38 -0.01 1.60 16 31 H 0.13 2.60 7.66 -2.39 -0.02 2.58 16 32 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 34 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 35 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.06 2.79 4.60 -2.39 -0.01 2.78 16 37 H 0.05 1.87 6.86 -2.39 -0.02 1.85 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -72.46 311.18 3.43 -69.04 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.92 Total: 12.85 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 5.56 Total: -0.77 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.47 Total: -114.96 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -1.25 Total: -13.38 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -72.46 3.43 -69.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105893462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.196 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds