Wall clock time and date at job start Mon Mar 30 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46905 * 2 1 4 4 H 1.09005 * 109.51697 * 55.12406 * 3 2 1 5 5 C 1.53117 * 109.52546 * 294.99936 * 3 2 1 6 6 C 1.53041 * 109.27900 * 182.43543 * 5 3 2 7 7 N 1.46853 * 109.51737 * 59.18122 * 6 5 3 8 8 C 1.46844 * 111.19879 * 298.25542 * 7 6 5 9 9 H 1.09005 * 109.46282 * 301.73131 * 8 7 6 10 10 C 1.50701 * 109.46371 * 181.75067 * 8 7 6 11 11 O 1.21293 * 119.99382 * 339.99945 * 10 8 7 12 12 N 1.34770 * 120.00082 * 159.99954 * 10 8 7 13 13 C 1.37104 * 119.99969 * 180.02562 * 12 10 8 14 14 H 1.07998 * 119.99803 * 320.52803 * 13 12 10 15 15 C 1.38946 * 119.99873 * 140.53046 * 13 12 10 16 16 N 1.31411 * 119.99861 * 155.72535 * 15 13 12 17 17 Si 1.86800 * 120.00052 * 335.71476 * 15 13 12 18 18 H 1.48498 * 109.46942 * 95.21045 * 17 15 13 19 19 H 1.48504 * 109.47113 * 215.20573 * 17 15 13 20 20 H 1.48489 * 109.47378 * 335.20832 * 17 15 13 21 21 C 1.46501 * 120.00408 * 359.97438 * 12 10 8 22 22 C 1.47207 * 109.46864 * 96.26335 * 21 12 10 23 23 N 4.79960 * 138.73761 * 88.22712 * 2 1 3 24 24 C 1.53039 * 109.52450 * 61.74209 * 8 7 6 25 25 H 1.09007 * 109.46893 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47741 * 299.99544 * 1 2 3 27 27 H 1.09007 * 109.47322 * 60.00322 * 1 2 3 28 28 H 1.08994 * 109.47741 * 240.00456 * 2 1 3 29 29 H 1.08996 * 109.46859 * 119.99840 * 2 1 3 30 30 H 1.08996 * 109.50226 * 302.38436 * 5 3 2 31 31 H 1.09010 * 109.50223 * 62.49850 * 5 3 2 32 32 H 1.08998 * 109.45950 * 179.19572 * 6 5 3 33 33 H 1.08996 * 109.46173 * 299.16513 * 6 5 3 34 34 H 1.00900 * 111.00147 * 62.35285 * 7 6 5 35 35 H 0.97002 * 120.00010 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.47461 * 216.26875 * 21 12 10 37 37 H 1.09003 * 109.46860 * 336.26935 * 21 12 10 38 38 H 1.08997 * 109.50466 * 180.87645 * 24 8 7 39 39 H 1.09008 * 109.49951 * 60.76123 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6074 1.9817 0.8429 5 6 1.6355 2.1283 -1.3079 6 6 2.2001 3.5507 -1.3283 7 7 3.6632 3.4994 -1.2136 8 6 4.0752 2.8877 0.0562 9 1 3.6561 3.4564 0.8862 10 6 5.5792 2.8939 0.1519 11 8 6.2502 3.0120 -0.8516 12 7 6.1785 2.7683 1.3525 13 6 7.5468 2.7745 1.4396 14 1 8.1377 2.2656 0.6925 15 6 8.1731 3.4355 2.4891 16 7 9.3802 3.0768 2.8645 17 14 7.2992 4.8342 3.3663 18 1 6.6172 4.3100 4.5768 19 1 8.2910 5.8653 3.7643 20 1 6.2948 5.4391 2.4551 21 6 5.3681 2.6262 2.5646 22 6 5.2375 1.1996 2.9031 23 7 5.1378 0.0979 3.1639 24 6 3.5665 1.4456 0.1180 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8934 -0.5137 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0346 1.5661 -2.1521 31 1 0.5483 2.1673 -1.3773 32 1 1.9259 4.0368 -2.2645 33 1 1.7898 4.1163 -0.4918 34 1 4.0707 3.0132 -1.9982 35 1 9.8176 3.5385 3.5970 36 1 5.8506 3.1524 3.3881 37 1 4.3790 3.0507 2.3921 38 1 3.8591 0.9968 1.0672 39 1 3.9961 0.8727 -0.7039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130280781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:53 Heat of formation + Delta-G solvation = -24.244170 kcal Electronic energy + Delta-G solvation = -21041.283083 eV Core-core repulsion = 17983.132327 eV Total energy + Delta-G solvation = -3058.150756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42214 -39.36416 -37.92231 -36.44421 -35.29845 -34.23329 -32.13995 -30.50849 -29.39994 -27.52263 -25.29178 -24.11122 -22.78875 -21.16746 -20.60118 -20.21962 -18.32494 -18.04235 -17.56517 -16.57325 -16.04172 -15.76558 -15.52732 -15.37692 -15.16111 -14.94238 -14.61308 -14.52667 -14.18461 -14.09208 -13.83061 -13.55508 -13.32841 -13.07875 -12.82621 -12.70751 -12.59146 -12.36306 -12.14302 -11.92552 -11.78928 -11.77452 -11.52507 -11.21330 -11.05023 -10.37108 -9.96512 -9.23471 -8.51278 -6.19494 1.22859 1.38585 1.44939 1.53147 1.71402 1.84831 2.21755 2.63255 2.81547 3.12442 3.41803 3.59632 3.72125 3.84429 3.95555 4.08287 4.13252 4.19273 4.31694 4.40491 4.52236 4.58047 4.62901 4.76054 4.86021 4.94248 5.03339 5.10799 5.13424 5.23053 5.23969 5.44963 5.45791 5.51942 6.00523 6.08540 6.41933 6.43659 6.51495 6.89064 7.17555 7.74196 8.65658 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.006631 C = 0.005878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.327539 B = 4221.577081 C = 4762.429118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.078 4.078 4 H 0.091 0.909 5 C -0.147 4.147 6 C 0.058 3.942 7 N -0.680 5.680 8 C 0.082 3.918 9 H 0.127 0.873 10 C 0.479 3.521 11 O -0.587 6.587 12 N -0.472 5.472 13 C -0.344 4.344 14 H 0.041 0.959 15 C 0.017 3.983 16 N -0.904 5.904 17 Si 0.926 3.074 18 H -0.226 1.226 19 H -0.285 1.285 20 H -0.237 1.237 21 C 0.177 3.823 22 C 0.221 3.779 23 N -0.464 5.464 24 C -0.140 4.140 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.342 0.658 35 H 0.282 0.718 36 H 0.111 0.889 37 H 0.166 0.834 38 H 0.059 0.941 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.529 2.168 -1.270 21.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.097 4.097 4 H 0.110 0.890 5 C -0.186 4.186 6 C -0.070 4.070 7 N -0.310 5.310 8 C -0.031 4.031 9 H 0.144 0.856 10 C 0.269 3.731 11 O -0.468 6.468 12 N -0.195 5.195 13 C -0.472 4.472 14 H 0.059 0.941 15 C -0.187 4.187 16 N -0.540 5.540 17 Si 0.746 3.254 18 H -0.150 1.150 19 H -0.211 1.211 20 H -0.159 1.159 21 C 0.051 3.949 22 C -0.098 4.098 23 N -0.143 5.143 24 C -0.180 4.180 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.128 0.872 37 H 0.183 0.817 38 H 0.078 0.922 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.087 1.272 -1.069 21.152 hybrid contribution 1.016 -0.492 -0.022 1.129 sum -20.071 0.780 -1.090 20.116 Atomic orbital electron populations 1.21762 0.93971 1.01924 1.02666 1.21540 0.97357 0.95785 1.01077 1.21200 0.91974 0.96861 0.99619 0.89023 1.22342 1.02710 0.97039 0.96459 1.22208 0.84995 0.95873 1.03943 1.60408 1.10347 1.57454 1.02777 1.21520 0.89767 0.95477 0.96340 0.85585 1.21267 0.90881 0.77883 0.83082 1.90540 1.67538 1.52266 1.36453 1.43595 1.05177 1.66003 1.04771 1.18509 0.80512 1.35407 1.12733 0.94072 1.26224 0.96437 0.98775 0.97240 1.69905 1.17182 1.39476 1.27480 0.86150 0.80031 0.79111 0.80100 1.15027 1.21129 1.15922 1.19888 1.00479 0.83755 0.90768 1.30046 0.91537 0.95954 0.92221 1.81086 1.10494 1.13033 1.09687 1.22276 0.98140 0.95701 1.01883 0.92791 0.91981 0.91471 0.93038 0.93349 0.92891 0.88739 0.89120 0.89309 0.83909 0.90856 0.87152 0.81660 0.92234 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 71.98 0.70 -1.37 16 2 C -0.12 -2.30 5.41 30.60 0.17 -2.13 16 3 C -0.08 -1.50 2.26 -10.72 -0.02 -1.52 16 4 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 5 C -0.15 -2.41 5.05 30.65 0.15 -2.25 16 6 C 0.06 1.06 6.55 86.33 0.57 1.63 16 7 N -0.68 -19.02 6.28 -495.54 -3.11 -22.14 16 8 C 0.08 2.47 2.05 44.19 0.09 2.56 16 9 H 0.13 2.97 6.30 -2.38 -0.02 2.95 16 10 C 0.48 20.81 6.88 87.66 0.60 21.42 16 11 O -0.59 -31.29 16.09 -3.07 -0.05 -31.34 16 12 N -0.47 -21.17 2.10 -645.41 -1.36 -22.53 16 13 C -0.34 -19.33 9.23 84.04 0.78 -18.56 16 14 H 0.04 2.78 7.95 -2.91 -0.02 2.75 16 15 C 0.02 0.89 5.29 84.93 0.45 1.34 16 16 N -0.90 -52.24 13.96 21.66 0.30 -51.94 16 17 Si 0.93 36.86 25.28 68.60 1.73 38.60 16 18 H -0.23 -7.43 6.65 99.48 0.66 -6.77 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.24 -8.75 7.11 99.48 0.71 -8.04 16 21 C 0.18 5.96 4.60 84.58 0.39 6.35 16 22 C 0.22 8.13 13.38 89.44 1.20 9.33 16 23 N -0.46 -18.52 18.54 20.01 0.37 -18.15 16 24 C -0.14 -3.84 4.55 30.64 0.14 -3.70 16 25 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.07 0.81 6.63 -2.38 -0.02 0.79 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.13 6.70 -2.38 -0.02 1.11 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.34 10.66 8.31 -89.69 -0.75 9.92 16 35 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.11 3.70 3.42 -2.39 -0.01 3.69 16 37 H 0.17 3.66 5.72 -2.39 -0.01 3.65 16 38 H 0.06 1.77 5.28 -2.39 -0.01 1.76 16 39 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -72.63 309.92 3.37 -69.26 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.28 Total: 25.15 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: 5.20 Total: 13.09 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.80 Total: -114.75 kcal Atomic # 8 Polarization: -31.29 SS G_CDS: -0.05 Total: -31.34 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 1.73 Total: 38.60 kcal Total: -72.63 3.37 -69.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130280781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.012 kcal (2) G-P(sol) polarization free energy of solvation -72.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds