Wall clock time and date at job start Mon Mar 30 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46940 * 2 1 4 4 H 1.09006 * 109.58091 * 305.16049 * 3 2 1 5 5 C 1.53118 * 109.52525 * 65.32037 * 3 2 1 6 6 C 1.53032 * 109.28233 * 177.55863 * 5 3 2 7 7 N 1.46850 * 109.52152 * 300.82076 * 6 5 3 8 8 C 1.46926 * 111.22198 * 61.74241 * 7 6 5 9 9 H 1.09003 * 109.45098 * 58.26312 * 8 7 6 10 10 C 1.50700 * 109.52082 * 178.26076 * 8 7 6 11 11 O 1.21297 * 119.99647 * 20.03044 * 10 8 7 12 12 N 1.34770 * 120.00378 * 200.03572 * 10 8 7 13 13 C 1.37094 * 120.00559 * 179.97438 * 12 10 8 14 14 H 1.08000 * 119.99450 * 17.61637 * 13 12 10 15 15 C 1.38947 * 120.00754 * 197.61415 * 13 12 10 16 16 N 1.31414 * 119.99649 * 21.57335 * 15 13 12 17 17 Si 1.86797 * 120.00442 * 201.57503 * 15 13 12 18 18 H 1.48499 * 109.47151 * 60.00169 * 17 15 13 19 19 H 1.48508 * 109.47122 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46859 * 299.99796 * 17 15 13 21 21 C 1.46504 * 119.99777 * 359.97438 * 12 10 8 22 22 C 1.47199 * 109.47510 * 84.33228 * 21 12 10 23 23 N 6.80667 * 117.18773 * 325.55909 * 2 1 3 24 24 C 1.53039 * 109.48066 * 298.28487 * 8 7 6 25 25 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46643 * 299.99472 * 1 2 3 27 27 H 1.08998 * 109.47572 * 59.99647 * 1 2 3 28 28 H 1.09001 * 109.46643 * 240.00528 * 2 1 3 29 29 H 1.08997 * 109.47103 * 120.00602 * 2 1 3 30 30 H 1.08998 * 109.50153 * 297.49985 * 5 3 2 31 31 H 1.09000 * 109.50221 * 57.57289 * 5 3 2 32 32 H 1.08998 * 109.46705 * 60.83363 * 6 5 3 33 33 H 1.08998 * 109.46529 * 180.81546 * 6 5 3 34 34 H 1.00898 * 110.99951 * 297.64462 * 7 6 5 35 35 H 0.96995 * 119.99926 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47134 * 204.33460 * 21 12 10 37 37 H 1.08998 * 109.47208 * 324.33139 * 21 12 10 38 38 H 1.08996 * 109.50166 * 299.19837 * 24 8 7 39 39 H 1.08998 * 109.50257 * 179.11671 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9840 -0.8396 5 6 1.6424 2.1258 1.3113 6 6 2.2072 3.5479 1.3315 7 7 3.6697 3.4970 1.2091 8 6 4.0758 2.8874 -0.0646 9 1 3.6524 3.4577 -0.8913 10 6 5.5792 2.8932 -0.1688 11 8 6.2560 3.0085 0.8312 12 7 6.1717 2.7703 -1.3730 13 6 7.5394 2.7761 -1.4680 14 1 8.1422 2.5930 -0.5908 15 6 8.1499 3.0176 -2.6925 16 7 7.4919 3.6430 -3.6428 17 14 9.9059 2.4532 -2.9882 18 1 9.9847 0.9785 -2.8328 19 1 10.3214 2.8283 -4.3638 20 1 10.8072 3.1038 -2.0036 21 6 5.3543 2.6306 -2.5807 22 6 4.9506 3.9637 -3.0571 23 7 4.6401 4.9933 -3.4242 24 6 3.5660 1.4457 -0.1259 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5557 2.1647 1.3865 31 1 2.0454 1.5616 2.1524 32 1 1.7926 4.1153 0.4982 33 1 1.9381 4.0323 2.2702 34 1 4.0811 3.0092 1.9906 35 1 7.9182 3.8118 -4.4975 36 1 5.9334 2.1280 -3.3554 37 1 4.4658 2.0422 -2.3520 38 1 3.9998 0.8712 0.6925 39 1 3.8536 0.9982 -1.0772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130281429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:00 Heat of formation + Delta-G solvation = -10.746670 kcal Electronic energy + Delta-G solvation = -20948.318034 eV Core-core repulsion = 17890.752573 eV Total energy + Delta-G solvation = -3057.565461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79266 -37.88892 -35.76858 -34.47963 -34.04719 -32.04088 -30.69875 -29.54363 -27.43679 -25.58994 -24.06537 -22.93050 -21.71170 -20.06501 -19.00977 -17.91412 -16.70830 -16.19097 -15.54493 -14.92684 -14.64767 -14.49048 -14.28591 -13.90156 -13.72719 -13.39770 -12.95671 -12.90153 -12.71846 -12.23440 -12.00819 -11.85390 -11.73915 -11.41847 -11.34548 -11.17449 -11.02411 -10.94941 -10.83740 -10.57495 -10.51606 -10.43398 -10.31527 -10.17492 -9.22993 -8.57842 -8.04648 -7.92449 -6.48056 -3.97291 3.13398 3.22980 3.25235 3.53795 3.80560 3.99043 4.11713 4.44944 4.65516 4.71825 4.90029 4.92257 5.04387 5.15478 5.18126 5.30594 5.40475 5.43257 5.52482 5.54475 5.64069 5.80797 5.84232 5.90820 5.92741 6.00415 6.04169 6.11885 6.15811 6.22239 6.29281 6.46992 6.50329 7.26835 7.49283 7.74977 7.94321 8.30946 8.76426 9.02597 9.22061 9.76918 10.58136 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.005674 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.761149 B = 4933.945882 C = 5017.285556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.087 4.087 4 H 0.072 0.928 5 C -0.153 4.153 6 C 0.058 3.942 7 N -0.665 5.665 8 C 0.076 3.924 9 H 0.088 0.912 10 C 0.466 3.534 11 O -0.564 6.564 12 N -0.443 5.443 13 C -0.313 4.313 14 H 0.108 0.892 15 C 0.032 3.968 16 N -0.878 5.878 17 Si 0.927 3.073 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.219 3.781 22 C 0.244 3.756 23 N -0.470 5.470 24 C -0.144 4.144 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.350 0.650 35 H 0.273 0.727 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 -8.707 3.854 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.090 0.910 5 C -0.192 4.192 6 C -0.072 4.072 7 N -0.295 5.295 8 C -0.037 4.037 9 H 0.106 0.894 10 C 0.254 3.746 11 O -0.446 6.446 12 N -0.163 5.163 13 C -0.440 4.440 14 H 0.126 0.874 15 C -0.172 4.172 16 N -0.517 5.517 17 Si 0.754 3.246 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.198 1.198 21 C 0.091 3.909 22 C -0.074 4.074 23 N -0.150 5.150 24 C -0.184 4.184 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.169 0.831 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.876 -6.403 3.395 13.913 hybrid contribution 0.828 -1.416 -0.189 1.651 sum -11.048 -7.818 3.206 13.909 Atomic orbital electron populations 1.21809 0.96089 1.01252 1.01817 1.21560 0.95629 0.96340 1.02067 1.21229 0.95248 0.96000 0.98101 0.90993 1.22389 1.01139 0.98089 0.97615 1.22044 0.87971 0.94995 1.02192 1.60307 1.07415 1.57983 1.03833 1.21480 0.94595 0.93662 0.94004 0.89370 1.19911 0.88402 0.82067 0.84210 1.90526 1.65241 1.53103 1.35682 1.43583 1.06207 1.63597 1.02941 1.19662 0.80091 1.47590 0.96697 0.87444 1.25262 1.00287 0.95549 0.96094 1.69860 1.39035 1.36410 1.06381 0.85971 0.81923 0.79319 0.77418 1.19753 1.21035 1.19817 1.18841 0.94923 0.86481 0.90640 1.29321 0.90121 0.95388 0.92603 1.80908 1.13255 1.11315 1.09564 1.22343 0.95207 0.97524 1.03317 0.93085 0.92654 0.92798 0.91815 0.92121 0.91539 0.92005 0.91190 0.90777 0.83063 0.91604 0.85545 0.89914 0.91244 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.68 37.16 0.36 -0.92 16 2 C -0.12 -1.14 5.41 -26.73 -0.14 -1.29 16 3 C -0.09 -0.98 2.25 -90.50 -0.20 -1.19 16 4 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.15 -1.65 5.06 -26.65 -0.13 -1.78 16 6 C 0.06 0.74 6.56 -3.83 -0.03 0.72 16 7 N -0.66 -11.17 6.29 -107.93 -0.68 -11.85 16 8 C 0.08 1.35 2.00 -68.83 -0.14 1.21 16 9 H 0.09 1.61 6.47 -51.93 -0.34 1.27 16 10 C 0.47 10.61 6.82 -10.99 -0.07 10.54 16 11 O -0.56 -14.81 15.85 5.54 0.09 -14.72 16 12 N -0.44 -10.33 2.60 -117.93 -0.31 -10.64 16 13 C -0.31 -8.10 9.32 -14.94 -0.14 -8.24 16 14 H 0.11 2.93 7.39 -52.49 -0.39 2.54 16 15 C 0.03 0.78 4.86 -17.47 -0.08 0.70 16 16 N -0.88 -22.30 9.48 55.50 0.53 -21.78 16 17 Si 0.93 19.68 29.60 -169.99 -5.03 14.65 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 21 C 0.22 4.36 4.80 -6.83 -0.03 4.32 16 22 C 0.24 5.47 12.60 -20.75 -0.26 5.21 16 23 N -0.47 -11.37 18.54 42.17 0.78 -10.59 16 24 C -0.14 -2.01 4.39 -26.65 -0.12 -2.13 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.45 6.64 -51.93 -0.34 0.10 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.62 6.71 -51.93 -0.35 0.27 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.35 5.92 8.32 -39.29 -0.33 5.60 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.13 2.56 6.47 -51.93 -0.34 2.23 16 37 H 0.08 1.29 4.96 -51.93 -0.26 1.03 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.00 6.18 -51.93 -0.32 0.68 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -30.32 312.14 -6.51 -36.83 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.60 Total: 6.25 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.00 Total: 7.15 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.32 Total: -54.86 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: 0.09 Total: -14.72 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.32 -6.51 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130281429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.081 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds