Wall clock time and date at job start Mon Mar 30 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.46940 * 2 1 4 4 H 1.09006 * 109.58091 * 305.16049 * 3 2 1 5 5 C 1.53118 * 109.52525 * 65.32037 * 3 2 1 6 6 C 1.53032 * 109.28233 * 177.55863 * 5 3 2 7 7 N 1.46850 * 109.52152 * 300.82076 * 6 5 3 8 8 C 1.46926 * 111.22198 * 61.74241 * 7 6 5 9 9 H 1.09003 * 109.45098 * 58.26312 * 8 7 6 10 10 C 1.50700 * 109.52082 * 178.26076 * 8 7 6 11 11 O 1.21297 * 119.99647 * 20.03044 * 10 8 7 12 12 N 1.34770 * 120.00378 * 200.03572 * 10 8 7 13 13 C 1.37094 * 120.00559 * 179.97438 * 12 10 8 14 14 H 1.08000 * 119.99450 * 17.61637 * 13 12 10 15 15 C 1.38947 * 120.00754 * 197.61415 * 13 12 10 16 16 N 1.31414 * 119.99649 * 21.57335 * 15 13 12 17 17 Si 1.86797 * 120.00442 * 201.57503 * 15 13 12 18 18 H 1.48499 * 109.47151 * 60.00169 * 17 15 13 19 19 H 1.48508 * 109.47122 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46859 * 299.99796 * 17 15 13 21 21 C 1.46504 * 119.99777 * 359.97438 * 12 10 8 22 22 C 1.47199 * 109.47510 * 84.33228 * 21 12 10 23 23 N 6.80667 * 117.18773 * 325.55909 * 2 1 3 24 24 C 1.53039 * 109.48066 * 298.28487 * 8 7 6 25 25 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46643 * 299.99472 * 1 2 3 27 27 H 1.08998 * 109.47572 * 59.99647 * 1 2 3 28 28 H 1.09001 * 109.46643 * 240.00528 * 2 1 3 29 29 H 1.08997 * 109.47103 * 120.00602 * 2 1 3 30 30 H 1.08998 * 109.50153 * 297.49985 * 5 3 2 31 31 H 1.09000 * 109.50221 * 57.57289 * 5 3 2 32 32 H 1.08998 * 109.46705 * 60.83363 * 6 5 3 33 33 H 1.08998 * 109.46529 * 180.81546 * 6 5 3 34 34 H 1.00898 * 110.99951 * 297.64462 * 7 6 5 35 35 H 0.96995 * 119.99926 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.47134 * 204.33460 * 21 12 10 37 37 H 1.08998 * 109.47208 * 324.33139 * 21 12 10 38 38 H 1.08996 * 109.50166 * 299.19837 * 24 8 7 39 39 H 1.08998 * 109.50257 * 179.11671 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6041 1.9840 -0.8396 5 6 1.6424 2.1258 1.3113 6 6 2.2072 3.5479 1.3315 7 7 3.6697 3.4970 1.2091 8 6 4.0758 2.8874 -0.0646 9 1 3.6524 3.4577 -0.8913 10 6 5.5792 2.8932 -0.1688 11 8 6.2560 3.0085 0.8312 12 7 6.1717 2.7703 -1.3730 13 6 7.5394 2.7761 -1.4680 14 1 8.1422 2.5930 -0.5908 15 6 8.1499 3.0176 -2.6925 16 7 7.4919 3.6430 -3.6428 17 14 9.9059 2.4532 -2.9882 18 1 9.9847 0.9785 -2.8328 19 1 10.3214 2.8283 -4.3638 20 1 10.8072 3.1038 -2.0036 21 6 5.3543 2.6306 -2.5807 22 6 4.9506 3.9637 -3.0571 23 7 4.6401 4.9933 -3.4242 24 6 3.5660 1.4457 -0.1259 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 0.5557 2.1647 1.3865 31 1 2.0454 1.5616 2.1524 32 1 1.7926 4.1153 0.4982 33 1 1.9381 4.0323 2.2702 34 1 4.0811 3.0092 1.9906 35 1 7.9182 3.8118 -4.4975 36 1 5.9334 2.1280 -3.3554 37 1 4.4658 2.0422 -2.3520 38 1 3.9998 0.8712 0.6925 39 1 3.8536 0.9982 -1.0772 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130281429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:59 Heat of formation + Delta-G solvation = -30.656053 kcal Electronic energy + Delta-G solvation = -20949.181369 eV Core-core repulsion = 17890.752573 eV Total energy + Delta-G solvation = -3058.428796 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25982 -39.27532 -37.58587 -36.19682 -35.21508 -33.86069 -31.99421 -30.44973 -29.18354 -27.21525 -25.31945 -24.06839 -22.80099 -21.06905 -20.57931 -19.76739 -18.34529 -17.90329 -16.96614 -16.32346 -16.01323 -15.70903 -15.54975 -15.32811 -14.91197 -14.73332 -14.52759 -14.24397 -14.06993 -13.74990 -13.41627 -13.25308 -13.08168 -12.91931 -12.78269 -12.55114 -12.34929 -12.27777 -12.14844 -12.07880 -11.81209 -11.72268 -11.46734 -11.15726 -11.10260 -10.32118 -9.92840 -9.20015 -8.39643 -5.95747 1.41209 1.48528 1.57758 1.78499 2.05211 2.22009 2.35236 2.95477 2.99241 3.45559 3.54958 3.72672 3.81972 3.93407 4.16450 4.19849 4.27873 4.43252 4.44407 4.58233 4.64834 4.67885 4.82458 4.85704 4.95266 4.99783 5.06778 5.16864 5.18733 5.27518 5.31457 5.49078 5.50886 5.59190 5.92767 6.16725 6.42587 6.47601 6.97476 7.12612 7.35561 7.93198 8.64134 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.005674 C = 0.005579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.761149 B = 4933.945882 C = 5017.285556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.082 4.082 4 H 0.075 0.925 5 C -0.145 4.145 6 C 0.057 3.943 7 N -0.688 5.688 8 C 0.089 3.911 9 H 0.085 0.915 10 C 0.457 3.543 11 O -0.608 6.608 12 N -0.453 5.453 13 C -0.343 4.343 14 H 0.082 0.918 15 C 0.005 3.995 16 N -0.894 5.894 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.279 1.279 20 H -0.283 1.283 21 C 0.222 3.778 22 C 0.255 3.745 23 N -0.504 5.504 24 C -0.137 4.137 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.346 0.654 35 H 0.275 0.725 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.062 0.938 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.413 -10.070 3.523 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.101 4.101 4 H 0.094 0.906 5 C -0.184 4.184 6 C -0.072 4.072 7 N -0.319 5.319 8 C -0.025 4.025 9 H 0.102 0.898 10 C 0.247 3.753 11 O -0.493 6.493 12 N -0.174 5.174 13 C -0.470 4.470 14 H 0.100 0.900 15 C -0.197 4.197 16 N -0.533 5.533 17 Si 0.812 3.188 18 H -0.183 1.183 19 H -0.204 1.204 20 H -0.209 1.209 21 C 0.095 3.905 22 C -0.063 4.063 23 N -0.185 5.185 24 C -0.177 4.177 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.165 0.835 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.427 -7.776 3.043 15.812 hybrid contribution 1.310 -0.936 -0.036 1.610 sum -12.117 -8.712 3.007 15.224 Atomic orbital electron populations 1.21791 0.94884 1.01957 1.02121 1.21523 0.96601 0.94878 1.02262 1.21214 0.92871 0.97448 0.98540 0.90623 1.22313 1.02371 0.96348 0.97372 1.22141 0.85499 0.96655 1.02859 1.60295 1.10060 1.58339 1.03197 1.21309 0.90556 0.96154 0.94487 0.89751 1.20896 0.90646 0.80418 0.83373 1.90486 1.66888 1.54783 1.37106 1.43750 1.05896 1.63512 1.04204 1.19589 0.81556 1.49353 0.96478 0.89979 1.25903 1.03582 0.94866 0.95350 1.69941 1.40323 1.36483 1.06526 0.85075 0.77391 0.79413 0.76944 1.18335 1.20392 1.20938 1.19131 0.96258 0.85714 0.89402 1.29792 0.89147 0.95615 0.91710 1.80903 1.14588 1.12285 1.10726 1.22292 0.97296 0.94571 1.03498 0.92264 0.92208 0.92628 0.91514 0.92153 0.89257 0.91888 0.91420 0.89367 0.83485 0.91516 0.85643 0.85220 0.91902 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.68 71.98 0.70 -1.33 16 2 C -0.12 -1.87 5.41 30.59 0.17 -1.70 16 3 C -0.08 -1.62 2.25 -10.72 -0.02 -1.65 16 4 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 5 C -0.15 -2.72 5.06 30.64 0.16 -2.57 16 6 C 0.06 1.36 6.56 86.32 0.57 1.93 16 7 N -0.69 -22.78 6.29 -495.39 -3.11 -25.90 16 8 C 0.09 3.07 2.00 44.18 0.09 3.16 16 9 H 0.08 2.99 6.47 -2.39 -0.02 2.97 16 10 C 0.46 21.09 6.82 87.66 0.60 21.68 16 11 O -0.61 -32.98 15.85 -3.08 -0.05 -33.03 16 12 N -0.45 -21.33 2.60 -645.42 -1.68 -23.01 16 13 C -0.34 -18.02 9.32 84.04 0.78 -17.24 16 14 H 0.08 4.66 7.39 -2.91 -0.02 4.64 16 15 C 0.01 0.25 4.86 84.93 0.41 0.66 16 16 N -0.89 -45.15 9.48 21.66 0.21 -44.94 16 17 Si 0.99 40.24 29.60 68.60 2.03 42.27 16 18 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 19 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 20 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 21 C 0.22 8.63 4.80 84.57 0.41 9.04 16 22 C 0.26 11.30 12.60 89.44 1.13 12.43 16 23 N -0.50 -24.27 18.54 20.01 0.37 -23.90 16 24 C -0.14 -3.58 4.39 30.65 0.13 -3.45 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.75 6.64 -2.39 -0.02 0.74 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.32 6.71 -2.39 -0.02 1.31 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.35 11.75 8.32 -89.70 -0.75 11.00 16 35 H 0.27 13.39 8.31 -92.71 -0.77 12.62 16 36 H 0.13 4.97 6.47 -2.39 -0.02 4.95 16 37 H 0.13 3.76 4.96 -2.39 -0.01 3.75 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 2.02 6.18 -2.39 -0.01 2.01 16 Total: -1.00 -66.35 312.14 3.19 -63.16 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.32 Total: 24.39 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 5.11 Total: 20.96 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -4.22 Total: -117.75 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.05 Total: -33.03 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -66.35 3.19 -63.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130281429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.501 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds