Wall clock time and date at job start Mon Mar 30 2020 04:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46830 * 2 1 4 4 C 1.39877 * 125.89624 * 125.02119 * 3 2 1 5 5 C 1.35319 * 107.91756 * 179.97438 * 4 3 2 6 6 C 1.50698 * 126.12443 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46784 * 85.00851 * 6 5 4 8 8 N 1.34945 * 107.74770 * 0.02562 * 5 4 3 9 9 C 1.46500 * 126.03821 * 180.02562 * 8 5 4 10 10 C 1.50696 * 109.47396 * 269.99730 * 9 8 5 11 11 O 1.21279 * 119.99895 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00013 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.46791 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00483 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99433 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00266 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99510 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47096 * 90.00407 * 18 16 14 20 20 H 1.48507 * 109.47207 * 209.99872 * 18 16 14 21 21 H 1.48490 * 109.47391 * 329.99874 * 18 16 14 22 22 N 1.30833 * 125.90276 * 305.02238 * 3 2 1 23 23 H 1.08995 * 109.46994 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47510 * 299.99994 * 1 2 3 25 25 H 1.08997 * 109.46885 * 60.00095 * 1 2 3 26 26 H 1.08997 * 109.47510 * 240.00006 * 2 1 3 27 27 H 1.08997 * 109.47162 * 119.99431 * 2 1 3 28 28 H 1.07996 * 126.04364 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.47253 * 205.00056 * 6 5 4 30 30 H 1.08996 * 109.47375 * 325.00517 * 6 5 4 31 31 H 1.08996 * 109.47437 * 59.99704 * 7 6 5 32 32 H 1.09000 * 109.47151 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.46577 * 299.99619 * 7 6 5 34 34 H 1.09003 * 109.46946 * 29.99763 * 9 8 5 35 35 H 1.09006 * 109.46968 * 149.99628 * 9 8 5 36 36 H 0.96998 * 119.99957 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.46771 * 299.99849 * 13 12 10 38 38 H 1.09002 * 109.46816 * 60.00375 * 13 12 10 39 39 H 0.97000 * 119.99972 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9187 1.9774 0.9280 5 6 3.1221 3.2706 0.5856 6 6 4.0068 4.2527 1.3094 7 6 5.4467 4.1034 0.8137 8 7 2.3900 3.5236 -0.5194 9 6 2.3155 4.8028 -1.2297 10 6 1.1935 5.6304 -0.6578 11 8 0.5225 5.1949 0.2537 12 7 0.9364 6.8549 -1.1586 13 6 -0.1548 7.6593 -0.6029 14 6 -0.2305 8.9756 -1.3327 15 1 0.4644 9.1913 -2.1309 16 6 -1.1869 9.9045 -0.9814 17 7 -2.0327 9.6421 -0.0091 18 14 -1.2812 11.5359 -1.8864 19 1 -2.1937 11.4041 -3.0506 20 1 -1.7983 12.5823 -0.9682 21 1 0.0732 11.9183 -2.3600 22 7 1.7146 2.3469 -0.8679 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.3630 1.4652 1.7686 29 1 3.6590 5.2671 1.1146 30 1 3.9690 4.0549 2.3806 31 1 5.4845 4.3012 -0.2575 32 1 6.0867 4.8134 1.3375 33 1 5.7945 3.0890 1.0084 34 1 3.2578 5.3383 -1.1135 35 1 2.1294 4.6203 -2.2882 36 1 1.4733 7.2034 -1.8874 37 1 -1.0969 7.1237 -0.7200 38 1 0.0307 7.8413 0.4557 39 1 -2.7058 10.2955 0.2378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131595853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:08 Heat of formation + Delta-G solvation = 16.574602 kcal Electronic energy + Delta-G solvation = -19771.714835 eV Core-core repulsion = 16715.334114 eV Total energy + Delta-G solvation = -3056.380721 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22675 -38.77089 -34.99123 -34.28880 -33.45055 -32.47292 -31.72388 -28.84582 -28.08183 -26.36740 -23.86748 -23.59166 -22.48446 -20.28262 -19.95142 -18.85877 -17.47862 -16.63364 -15.89791 -15.18400 -15.05532 -14.72303 -14.63143 -14.22132 -14.14154 -13.81096 -13.48913 -13.08237 -12.80356 -12.74382 -12.42423 -12.05561 -11.93081 -11.70554 -11.57036 -11.42045 -11.16203 -11.05564 -11.02916 -10.92597 -10.37511 -10.22955 -9.50411 -9.46192 -8.80587 -8.79078 -8.26192 -8.01105 -6.21688 -4.29511 2.01001 2.56749 2.96018 3.13519 3.21054 3.27156 3.29331 3.96493 4.31384 4.54465 4.59425 4.86359 4.98950 5.10961 5.13824 5.14886 5.18252 5.31940 5.36119 5.46749 5.54458 5.62287 5.73791 5.82258 5.86704 5.91782 6.03203 6.11793 6.30289 6.39559 6.86113 7.11291 7.22909 7.30429 7.43450 7.58361 7.89810 7.95675 8.47369 8.68581 8.94185 9.37080 10.88447 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.004019 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.148060 B = 6964.822164 C = 7669.379512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C 0.071 3.929 4 C -0.274 4.274 5 C 0.102 3.898 6 C -0.066 4.066 7 C -0.144 4.144 8 N -0.347 5.347 9 C 0.110 3.890 10 C 0.480 3.520 11 O -0.535 6.535 12 N -0.708 5.708 13 C 0.251 3.749 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 N -0.283 5.283 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.142 0.858 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.392 0.608 37 H 0.027 0.973 38 H 0.028 0.972 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.696 -13.703 -0.459 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 C -0.095 4.095 4 C -0.303 4.303 5 C -0.025 4.025 6 C -0.105 4.105 7 C -0.202 4.202 8 N -0.128 5.128 9 C -0.016 4.016 10 C 0.262 3.738 11 O -0.412 6.412 12 N -0.357 5.357 13 C 0.131 3.869 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.105 5.105 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.160 0.840 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.224 0.776 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.336 -13.491 -0.806 18.298 hybrid contribution 0.457 1.099 -0.069 1.192 sum 12.793 -12.392 -0.874 17.832 Atomic orbital electron populations 1.21712 0.94467 1.01339 1.02960 1.19906 0.96293 0.88809 1.02629 1.22204 0.97000 0.96138 0.94189 1.20977 1.09427 0.94267 1.05669 1.20972 0.95871 0.96093 0.89608 1.20231 0.93277 0.97094 0.99879 1.21733 0.94798 1.02411 1.01242 1.47851 1.34715 1.08461 1.21760 1.21562 1.00300 0.81399 0.98341 1.20600 0.85767 0.82913 0.84470 1.90733 1.50036 1.71006 1.29439 1.46431 1.36160 1.15855 1.37292 1.19141 0.84144 0.88971 0.94670 1.21202 1.17354 1.00434 1.19388 0.91794 1.24960 0.95073 0.98907 0.95038 1.69976 1.18236 1.35806 1.28161 0.86394 0.78438 0.82549 0.79413 1.20408 1.20959 1.19704 1.77269 1.17986 0.90999 1.24226 0.92498 0.92496 0.92038 0.90647 0.90320 0.83995 0.90577 0.89152 0.92779 0.91764 0.92075 0.86674 0.86274 0.77550 0.95467 0.95449 0.92360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.87 37.16 0.37 -1.37 16 2 C -0.04 -0.42 6.51 -27.88 -0.18 -0.60 16 3 C 0.07 1.08 6.49 -82.40 -0.53 0.55 16 4 C -0.27 -3.91 10.64 -40.01 -0.43 -4.34 16 5 C 0.10 1.51 6.18 -82.27 -0.51 1.00 16 6 C -0.07 -0.76 6.04 -27.88 -0.17 -0.93 16 7 C -0.14 -1.26 9.89 37.16 0.37 -0.90 16 8 N -0.35 -5.73 3.10 -58.31 -0.18 -5.91 16 9 C 0.11 1.61 6.51 -5.20 -0.03 1.57 16 10 C 0.48 9.57 7.90 -10.99 -0.09 9.49 16 11 O -0.53 -13.38 16.43 5.56 0.09 -13.29 16 12 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 13 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 14 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 15 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -25.98 13.29 55.43 0.74 -25.25 16 18 Si 0.91 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 22 N -0.28 -5.01 12.54 33.67 0.42 -4.58 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 28 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.08 0.95 7.49 -51.93 -0.39 0.56 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.12 1.25 7.55 -51.93 -0.39 0.86 16 35 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -34.78 336.98 -7.01 -41.79 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.15 Total: 3.54 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.65 Total: -2.19 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.64 Total: -50.52 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.78 -7.01 -41.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131595853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.368 kcal (2) G-P(sol) polarization free energy of solvation -34.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds