Wall clock time and date at job start Mon Mar 30 2020 04:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46830 * 2 1 4 4 C 1.39877 * 125.89624 * 125.02119 * 3 2 1 5 5 C 1.35319 * 107.91756 * 179.97438 * 4 3 2 6 6 C 1.50698 * 126.12443 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46784 * 85.00851 * 6 5 4 8 8 N 1.34945 * 107.74770 * 0.02562 * 5 4 3 9 9 C 1.46500 * 126.03821 * 180.02562 * 8 5 4 10 10 C 1.50696 * 109.47396 * 269.99730 * 9 8 5 11 11 O 1.21279 * 119.99895 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00228 * 179.97438 * 10 9 8 13 13 C 1.46508 * 120.00013 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.46791 * 179.97438 * 13 12 10 15 15 H 1.08001 * 120.00483 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99433 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00266 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99510 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47096 * 90.00407 * 18 16 14 20 20 H 1.48507 * 109.47207 * 209.99872 * 18 16 14 21 21 H 1.48490 * 109.47391 * 329.99874 * 18 16 14 22 22 N 1.30833 * 125.90276 * 305.02238 * 3 2 1 23 23 H 1.08995 * 109.46994 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47510 * 299.99994 * 1 2 3 25 25 H 1.08997 * 109.46885 * 60.00095 * 1 2 3 26 26 H 1.08997 * 109.47510 * 240.00006 * 2 1 3 27 27 H 1.08997 * 109.47162 * 119.99431 * 2 1 3 28 28 H 1.07996 * 126.04364 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.47253 * 205.00056 * 6 5 4 30 30 H 1.08996 * 109.47375 * 325.00517 * 6 5 4 31 31 H 1.08996 * 109.47437 * 59.99704 * 7 6 5 32 32 H 1.09000 * 109.47151 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.46577 * 299.99619 * 7 6 5 34 34 H 1.09003 * 109.46946 * 29.99763 * 9 8 5 35 35 H 1.09006 * 109.46968 * 149.99628 * 9 8 5 36 36 H 0.96998 * 119.99957 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.46771 * 299.99849 * 13 12 10 38 38 H 1.09002 * 109.46816 * 60.00375 * 13 12 10 39 39 H 0.97000 * 119.99972 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9187 1.9774 0.9280 5 6 3.1221 3.2706 0.5856 6 6 4.0068 4.2527 1.3094 7 6 5.4467 4.1034 0.8137 8 7 2.3900 3.5236 -0.5194 9 6 2.3155 4.8028 -1.2297 10 6 1.1935 5.6304 -0.6578 11 8 0.5225 5.1949 0.2537 12 7 0.9364 6.8549 -1.1586 13 6 -0.1548 7.6593 -0.6029 14 6 -0.2305 8.9756 -1.3327 15 1 0.4644 9.1913 -2.1309 16 6 -1.1869 9.9045 -0.9814 17 7 -2.0327 9.6421 -0.0091 18 14 -1.2812 11.5359 -1.8864 19 1 -2.1937 11.4041 -3.0506 20 1 -1.7983 12.5823 -0.9682 21 1 0.0732 11.9183 -2.3600 22 7 1.7146 2.3469 -0.8679 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.3630 1.4652 1.7686 29 1 3.6590 5.2671 1.1146 30 1 3.9690 4.0549 2.3806 31 1 5.4845 4.3012 -0.2575 32 1 6.0867 4.8134 1.3375 33 1 5.7945 3.0890 1.0084 34 1 3.2578 5.3383 -1.1135 35 1 2.1294 4.6203 -2.2882 36 1 1.4733 7.2034 -1.8874 37 1 -1.0969 7.1237 -0.7200 38 1 0.0307 7.8413 0.4557 39 1 -2.7058 10.2955 0.2378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131595853.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:08 Heat of formation + Delta-G solvation = -7.881326 kcal Electronic energy + Delta-G solvation = -19772.775324 eV Core-core repulsion = 16715.334114 eV Total energy + Delta-G solvation = -3057.441210 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.37101 -40.45691 -36.31157 -35.93418 -34.50234 -34.36539 -32.90247 -29.87018 -29.83308 -27.87577 -25.14888 -24.52214 -24.18582 -21.78873 -21.23145 -20.00650 -19.17639 -17.87799 -17.77496 -16.86166 -16.62106 -16.13832 -15.63887 -15.53580 -15.37142 -14.83701 -14.71388 -14.45917 -14.16764 -14.06949 -13.90518 -13.59821 -13.15986 -12.96211 -12.86507 -12.73104 -12.53222 -12.30836 -12.25114 -12.03825 -11.96933 -11.53028 -11.31946 -11.14266 -10.84507 -10.01828 -9.96103 -9.42175 -8.32213 -6.49671 0.84067 1.42009 1.44628 1.46188 1.53918 1.56197 1.87027 2.29517 2.51405 3.03076 3.53059 3.58472 3.78105 3.93203 4.01162 4.12085 4.22257 4.37844 4.42065 4.60141 4.65885 4.75523 4.83237 4.95596 5.02132 5.03876 5.04499 5.15089 5.16565 5.31310 5.34119 5.39546 5.40512 5.59343 5.78553 5.80006 6.07051 6.60200 6.75698 6.81811 7.18446 7.35109 8.80074 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.004019 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.148060 B = 6964.822164 C = 7669.379512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.036 4.036 3 C 0.064 3.936 4 C -0.285 4.285 5 C 0.093 3.907 6 C -0.065 4.065 7 C -0.136 4.136 8 N -0.365 5.365 9 C 0.121 3.879 10 C 0.480 3.520 11 O -0.592 6.592 12 N -0.698 5.698 13 C 0.268 3.732 14 C -0.556 4.556 15 H 0.089 0.911 16 C 0.003 3.997 17 N -0.933 5.933 18 Si 0.986 3.014 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.252 1.252 22 N -0.330 5.330 23 H 0.086 0.914 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.168 0.832 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.413 0.587 37 H -0.018 1.018 38 H -0.011 1.011 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.125 -13.655 -1.616 21.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.102 4.102 4 C -0.314 4.314 5 C -0.034 4.034 6 C -0.104 4.104 7 C -0.193 4.193 8 N -0.146 5.146 9 C -0.004 4.004 10 C 0.265 3.735 11 O -0.473 6.473 12 N -0.349 5.349 13 C 0.146 3.854 14 C -0.594 4.594 15 H 0.107 0.893 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.809 3.191 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.175 1.175 22 N -0.152 5.152 23 H 0.105 0.895 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.124 0.876 28 H 0.185 0.815 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.177 0.823 35 H 0.161 0.839 36 H 0.250 0.750 37 H 0.000 1.000 38 H 0.007 0.993 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.821 -13.459 -2.002 20.120 hybrid contribution -0.315 0.987 0.365 1.098 sum 14.506 -12.472 -1.637 19.201 Atomic orbital electron populations 1.21679 0.95120 1.02563 1.00780 1.20083 0.95602 0.87136 1.04686 1.22896 0.96437 0.97278 0.93595 1.21407 1.09357 0.94423 1.06208 1.21616 0.95627 0.97067 0.89102 1.20354 0.94412 0.95522 1.00133 1.21693 0.92850 1.03350 1.01450 1.48029 1.35289 1.08507 1.22758 1.21654 0.99438 0.80499 0.98822 1.21601 0.86173 0.82476 0.83237 1.90703 1.52387 1.72122 1.32066 1.46098 1.35083 1.15935 1.37795 1.18552 0.84113 0.89675 0.93110 1.21618 1.17800 1.00224 1.19722 0.89346 1.26099 0.94417 1.03391 0.95731 1.70147 1.19246 1.37500 1.30225 0.85130 0.79362 0.76810 0.77764 1.19751 1.21034 1.17531 1.77201 1.19645 0.92134 1.26172 0.89532 0.94399 0.94441 0.89078 0.87638 0.81460 0.91742 0.88358 0.92585 0.90037 0.91462 0.82305 0.83875 0.75019 0.99986 0.99301 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.87 71.98 0.71 -2.63 16 2 C -0.04 -0.77 6.51 29.85 0.19 -0.57 16 3 C 0.06 1.91 6.49 43.10 0.28 2.19 16 4 C -0.29 -7.79 10.64 21.99 0.23 -7.55 16 5 C 0.09 2.64 6.18 41.41 0.26 2.90 16 6 C -0.07 -1.40 6.04 29.85 0.18 -1.22 16 7 C -0.14 -2.01 9.89 71.98 0.71 -1.30 16 8 N -0.36 -11.82 3.10 -338.40 -1.05 -12.87 16 9 C 0.12 3.38 6.51 85.63 0.56 3.94 16 10 C 0.48 19.41 7.90 87.66 0.69 20.10 16 11 O -0.59 -31.00 16.43 -3.03 -0.05 -31.05 16 12 N -0.70 -28.73 5.55 -466.79 -2.59 -31.32 16 13 C 0.27 14.71 5.43 85.63 0.46 15.18 16 14 C -0.56 -29.81 9.28 25.60 0.24 -29.58 16 15 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 16 C 0.00 0.18 5.46 84.66 0.46 0.64 16 17 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 18 Si 0.99 41.83 29.54 68.60 2.03 43.86 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 22 N -0.33 -11.68 12.54 -47.38 -0.59 -12.28 16 23 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.11 1.66 8.12 -2.39 -0.02 1.64 16 28 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.06 1.53 7.49 -2.39 -0.02 1.51 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.16 2.99 7.55 -2.39 -0.02 2.97 16 35 H 0.14 3.32 8.14 -2.38 -0.02 3.30 16 36 H 0.41 13.29 8.32 -92.71 -0.77 12.52 16 37 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -80.13 336.98 3.27 -76.85 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.26 Total: 20.87 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 4.98 Total: 2.10 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -3.95 Total: -112.63 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.05 Total: -31.05 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -80.13 3.27 -76.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131595853.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.970 kcal (2) G-P(sol) polarization free energy of solvation -80.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds