Wall clock time and date at job start Mon Mar 30 2020 05:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 H 1.08993 * 109.47311 * 54.99766 * 3 2 1 5 5 C 1.50697 * 109.47226 * 175.00397 * 3 2 1 6 6 H 1.08005 * 120.00257 * 120.00311 * 5 3 2 7 7 C 1.37880 * 120.00017 * 299.99549 * 5 3 2 8 8 N 1.31512 * 119.99614 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47214 * 60.00409 * 9 7 5 11 11 H 1.48503 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47748 * 300.00247 * 9 7 5 13 13 N 1.46505 * 109.47044 * 295.00141 * 3 2 1 14 14 C 1.34777 * 120.00115 * 84.99797 * 13 3 2 15 15 O 1.21282 * 119.99620 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.35320 * 126.12567 * 84.68919 * 18 17 16 20 20 C 1.39869 * 107.91823 * 179.90311 * 19 18 17 21 21 N 1.30836 * 108.20532 * 0.36581 * 20 19 18 22 22 N 1.34949 * 126.12770 * 264.99944 * 18 17 16 23 23 C 1.46496 * 126.03563 * 359.94595 * 22 18 17 24 24 H 1.09002 * 109.46630 * 299.99872 * 1 2 3 25 25 H 1.09000 * 109.47119 * 59.99811 * 1 2 3 26 26 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47022 * 239.99760 * 2 1 3 28 28 H 1.08995 * 109.47576 * 120.00057 * 2 1 3 29 29 H 0.97003 * 119.99608 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00244 * 264.99827 * 13 3 2 31 31 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 32 32 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 33 33 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 34 34 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 35 35 H 1.08004 * 126.03532 * 0.03520 * 19 18 17 36 36 H 1.07998 * 125.89362 * 180.14155 * 20 19 18 37 37 H 1.08994 * 109.47463 * 89.99820 * 23 22 18 38 38 H 1.09002 * 109.47103 * 209.99935 * 23 22 18 39 39 H 1.09004 * 109.47209 * 329.99441 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4442 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0049 0.8811 1.3816 10 1 6.4995 2.2814 1.3819 11 1 6.3978 0.2177 2.6508 12 1 6.5976 0.1472 0.2347 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4344 16 6 0.0362 3.3377 -2.6548 17 6 -1.3825 3.8946 -2.5210 18 6 -1.7811 4.5685 -3.8087 19 6 -2.3064 3.9608 -4.8978 20 6 -2.5343 4.9408 -5.8693 21 7 -2.1521 6.0942 -5.3841 22 7 -1.6729 5.8850 -4.0844 23 6 -1.1474 6.9139 -3.1836 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0618 2.9494 30 1 2.2719 2.1231 -1.9979 31 1 0.0672 2.6130 -3.4685 32 1 0.7277 4.1529 -2.8679 33 1 -1.4130 4.6194 -1.7075 34 1 -2.0741 3.0796 -2.3077 35 1 -2.5148 2.9058 -4.9980 36 1 -2.9502 4.7736 -6.8519 37 1 -0.0724 7.0132 -3.3332 38 1 -1.6334 7.8660 -3.3966 39 1 -1.3456 6.6279 -2.1506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131994320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:00 Heat of formation + Delta-G solvation = 23.355641 kcal Electronic energy + Delta-G solvation = -19921.483739 eV Core-core repulsion = 16865.397065 eV Total energy + Delta-G solvation = -3056.086673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.28717 -39.07917 -35.27514 -33.92447 -32.97893 -32.37758 -30.97936 -29.20150 -27.03205 -26.79694 -24.50096 -22.85355 -21.19536 -20.28496 -19.60185 -19.32057 -17.30339 -16.60980 -15.68857 -15.59375 -15.28585 -15.14475 -14.41878 -14.25528 -13.93178 -13.34346 -13.21977 -12.88768 -12.73667 -12.50861 -12.27577 -11.98401 -11.87672 -11.48824 -11.25796 -11.03280 -11.00833 -10.83120 -10.65175 -10.34800 -10.18252 -9.64775 -9.37748 -9.08564 -8.99927 -8.55068 -8.50693 -7.84156 -6.14527 -4.24179 1.80088 2.45448 2.78245 3.23431 3.29158 3.29893 3.37876 4.03557 4.33905 4.48408 4.71177 4.97222 5.00632 5.09680 5.11175 5.16743 5.29597 5.46577 5.56687 5.70401 5.78037 5.81588 6.08150 6.21417 6.37978 6.44300 6.59981 6.64627 6.94467 7.02499 7.17843 7.35166 7.43913 7.59759 7.65191 7.71280 7.88167 8.16556 8.65055 8.75211 9.11565 9.43428 10.90663 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031352 B = 0.003867 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.880552 B = 7239.262021 C = 7667.703315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.708 5.708 14 C 0.500 3.500 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.041 4.041 18 C 0.094 3.906 19 C -0.276 4.276 20 C 0.045 3.955 21 N -0.306 5.306 22 N -0.372 5.372 23 C 0.097 3.903 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.022 0.978 27 H 0.031 0.969 28 H 0.098 0.902 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.181 0.819 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 7.148 -11.519 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.430 6.430 16 C -0.177 4.177 17 C -0.081 4.081 18 C -0.034 4.034 19 C -0.305 4.305 20 C -0.141 4.141 21 N -0.127 5.127 22 N -0.155 5.155 23 C -0.044 4.044 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.165 0.835 36 H 0.198 0.802 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.083 8.391 -10.764 15.862 hybrid contribution 1.294 -0.897 -0.185 1.585 sum -6.789 7.494 -10.949 14.904 Atomic orbital electron populations 1.21836 0.98327 0.98027 1.01214 1.21934 0.92638 0.99837 1.02264 1.18773 0.94121 0.89202 0.81069 0.93345 1.21206 0.90789 1.39160 1.06286 0.92191 1.24882 0.98580 0.94789 0.95388 1.69883 1.35222 1.37477 1.09351 0.86525 0.84888 0.78303 0.77475 1.20217 1.21118 1.20154 1.46513 1.14683 1.55860 1.18526 1.20275 0.82823 0.79459 0.88924 1.90674 1.51417 1.60216 1.40738 1.21629 0.96721 1.01372 0.97934 1.19996 0.96700 1.00424 0.90940 1.21244 0.99592 0.84550 0.97986 1.21270 1.14067 1.00981 0.94205 1.23802 0.99787 0.90245 1.00240 1.77328 1.19717 1.23502 0.92160 1.48515 1.49106 1.06067 1.11804 1.21883 0.99729 0.90575 0.92259 0.93177 0.94243 0.95888 0.95066 0.88335 0.92497 0.77968 0.88958 0.89743 0.89964 0.88330 0.83531 0.80194 0.90607 0.89415 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.59 2.24 -69.08 -0.15 6.43 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.98 16 5 C -0.54 -13.84 8.73 -34.44 -0.30 -14.14 16 6 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 13 N -0.71 -13.87 5.02 -54.94 -0.28 -14.15 16 14 C 0.50 9.03 6.40 -10.99 -0.07 8.96 16 15 O -0.55 -11.81 13.12 5.56 0.07 -11.74 16 16 C -0.14 -1.76 5.68 -27.89 -0.16 -1.91 16 17 C -0.04 -0.51 4.79 -27.88 -0.13 -0.64 16 18 C 0.09 1.15 6.19 -82.26 -0.51 0.64 16 19 C -0.28 -3.21 10.72 -40.01 -0.43 -3.64 16 20 C 0.04 0.51 12.03 -17.37 -0.21 0.30 16 21 N -0.31 -4.08 12.58 30.62 0.39 -3.69 16 22 N -0.37 -4.58 4.01 -63.89 -0.26 -4.84 16 23 C 0.10 0.87 11.27 59.84 0.67 1.54 16 24 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 25 H 0.04 0.82 5.64 -51.93 -0.29 0.52 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 29 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.39 6.63 8.54 -40.82 -0.35 6.28 16 31 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.03 6.90 -51.93 -0.36 0.67 16 34 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 35 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.71 6.97 -51.93 -0.36 0.35 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -31.13 322.72 -6.64 -37.76 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.82 Total: 6.86 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.21 Total: -6.63 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.48 Total: -46.39 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.07 Total: -11.74 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.13 -6.64 -37.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131994320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.120 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds