Wall clock time and date at job start Mon Mar 30 2020 05:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47408 * 2 1 4 4 H 1.08993 * 109.47311 * 54.99766 * 3 2 1 5 5 C 1.50697 * 109.47226 * 175.00397 * 3 2 1 6 6 H 1.08005 * 120.00257 * 120.00311 * 5 3 2 7 7 C 1.37880 * 120.00017 * 299.99549 * 5 3 2 8 8 N 1.31512 * 119.99614 * 0.02562 * 7 5 3 9 9 Si 1.86791 * 120.00021 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47214 * 60.00409 * 9 7 5 11 11 H 1.48503 * 109.47118 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47748 * 300.00247 * 9 7 5 13 13 N 1.46505 * 109.47044 * 295.00141 * 3 2 1 14 14 C 1.34777 * 120.00115 * 84.99797 * 13 3 2 15 15 O 1.21282 * 119.99620 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00369 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47466 * 180.02562 * 16 14 13 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.35320 * 126.12567 * 84.68919 * 18 17 16 20 20 C 1.39869 * 107.91823 * 179.90311 * 19 18 17 21 21 N 1.30836 * 108.20532 * 0.36581 * 20 19 18 22 22 N 1.34949 * 126.12770 * 264.99944 * 18 17 16 23 23 C 1.46496 * 126.03563 * 359.94595 * 22 18 17 24 24 H 1.09002 * 109.46630 * 299.99872 * 1 2 3 25 25 H 1.09000 * 109.47119 * 59.99811 * 1 2 3 26 26 H 1.09000 * 109.46771 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47022 * 239.99760 * 2 1 3 28 28 H 1.08995 * 109.47576 * 120.00057 * 2 1 3 29 29 H 0.97003 * 119.99608 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00244 * 264.99827 * 13 3 2 31 31 H 1.09002 * 109.47120 * 59.99760 * 16 14 13 32 32 H 1.08998 * 109.46862 * 300.00562 * 16 14 13 33 33 H 1.09002 * 109.47153 * 59.99773 * 17 16 14 34 34 H 1.09001 * 109.46832 * 299.99964 * 17 16 14 35 35 H 1.08004 * 126.03532 * 0.03520 * 19 18 17 36 36 H 1.07998 * 125.89362 * 180.14155 * 20 19 18 37 37 H 1.08994 * 109.47463 * 89.99820 * 23 22 18 38 38 H 1.09002 * 109.47103 * 209.99935 * 23 22 18 39 39 H 1.09004 * 109.47209 * 329.99441 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4442 0.1237 6 1 4.1473 1.8888 -0.6524 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0049 0.8811 1.3816 10 1 6.4995 2.2814 1.3819 11 1 6.3978 0.2177 2.6508 12 1 6.5976 0.1472 0.2347 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3670 15 8 -0.3395 2.6319 -0.4344 16 6 0.0362 3.3377 -2.6548 17 6 -1.3825 3.8946 -2.5210 18 6 -1.7811 4.5685 -3.8087 19 6 -2.3064 3.9608 -4.8978 20 6 -2.5343 4.9408 -5.8693 21 7 -2.1521 6.0942 -5.3841 22 7 -1.6729 5.8850 -4.0844 23 6 -1.1474 6.9139 -3.1836 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0618 2.9494 30 1 2.2719 2.1231 -1.9979 31 1 0.0672 2.6130 -3.4685 32 1 0.7277 4.1529 -2.8679 33 1 -1.4130 4.6194 -1.7075 34 1 -2.0741 3.0796 -2.3077 35 1 -2.5148 2.9058 -4.9980 36 1 -2.9502 4.7736 -6.8519 37 1 -0.0724 7.0132 -3.3332 38 1 -1.6334 7.8660 -3.3966 39 1 -1.3456 6.6279 -2.1506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131994320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:00 Heat of formation + Delta-G solvation = 3.156262 kcal Electronic energy + Delta-G solvation = -19922.359650 eV Core-core repulsion = 16865.397065 eV Total energy + Delta-G solvation = -3056.962584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.16658 -40.61993 -37.01943 -34.99802 -34.25725 -33.84601 -32.72249 -30.30717 -28.83712 -27.56770 -25.81783 -24.61011 -22.06795 -21.91770 -21.00981 -20.51192 -18.88493 -17.82459 -17.18501 -17.05363 -16.57781 -16.39789 -15.93273 -15.37934 -14.98232 -14.70396 -14.57602 -14.41003 -13.68271 -13.58446 -13.45548 -13.30456 -13.18078 -13.10991 -12.89912 -12.84851 -12.63959 -12.16829 -12.08152 -11.99271 -11.56077 -11.53156 -11.03215 -10.65008 -10.48169 -10.18440 -9.56473 -9.43480 -8.14440 -6.31550 0.90466 1.45851 1.46886 1.54713 1.66035 1.91920 1.93595 2.38341 2.72349 3.14978 3.64541 3.75370 3.99325 4.02599 4.29500 4.37910 4.41542 4.53279 4.59921 4.62141 4.64957 4.69699 4.81784 4.86279 4.93880 5.09832 5.11390 5.30888 5.32184 5.47890 5.59501 5.67478 5.79126 5.83857 5.96630 6.10666 6.20876 6.77431 6.78504 7.05855 7.36224 7.65762 8.90389 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.031352 B = 0.003867 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.880552 B = 7239.262021 C = 7667.703315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.265 1.265 13 N -0.708 5.708 14 C 0.499 3.501 15 O -0.587 6.587 16 C -0.118 4.118 17 C -0.032 4.032 18 C 0.085 3.915 19 C -0.281 4.281 20 C 0.043 3.957 21 N -0.336 5.336 22 N -0.380 5.380 23 C 0.089 3.911 24 H 0.025 0.975 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.163 0.837 36 H 0.210 0.790 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 7.383 -13.496 17.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.469 6.469 16 C -0.159 4.159 17 C -0.072 4.072 18 C -0.043 4.043 19 C -0.311 4.311 20 C -0.142 4.142 21 N -0.157 5.157 22 N -0.163 5.163 23 C -0.052 4.052 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.238 0.762 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.180 0.820 36 H 0.227 0.773 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.588 8.649 -12.781 17.197 hybrid contribution 1.081 -0.939 0.431 1.495 sum -6.508 7.709 -12.350 15.947 Atomic orbital electron populations 1.21676 0.96787 0.99106 1.00450 1.21786 0.93935 0.99249 1.01144 1.18329 0.93389 0.89191 0.81668 0.98320 1.21585 0.91707 1.38871 1.06595 0.91138 1.25741 1.03098 0.94459 0.95110 1.70041 1.37039 1.38341 1.09866 0.85474 0.79408 0.78411 0.77492 1.19695 1.21316 1.19019 1.46292 1.15846 1.56088 1.17434 1.21115 0.81603 0.78486 0.90198 1.90667 1.52289 1.61302 1.42615 1.21536 0.97324 1.01920 0.95095 1.19851 0.96122 1.00114 0.91085 1.21226 1.00285 0.84849 0.97926 1.21580 1.13589 1.01914 0.93982 1.24338 0.98944 0.89566 1.01346 1.77294 1.20835 1.24705 0.92914 1.48776 1.49095 1.06556 1.11863 1.22111 1.00372 0.90486 0.92218 0.95581 0.93269 0.93796 0.94165 0.91279 0.92666 0.76241 0.86694 0.87857 0.90464 0.88901 0.81974 0.77349 0.89640 0.88518 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.51 71.98 0.61 -4.71 16 2 C -0.12 -5.86 5.45 30.59 0.17 -5.69 16 3 C 0.28 13.75 2.24 44.24 0.10 13.84 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -28.35 8.73 25.60 0.22 -28.13 16 6 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.91 -51.61 11.29 21.45 0.24 -51.37 16 9 Si 0.97 41.36 29.54 68.60 2.03 43.38 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.71 -27.14 5.02 -446.11 -2.24 -29.38 16 14 C 0.50 17.50 6.40 87.66 0.56 18.06 16 15 O -0.59 -25.32 13.12 -3.04 -0.04 -25.36 16 16 C -0.12 -2.78 5.68 29.85 0.17 -2.61 16 17 C -0.03 -0.74 4.79 29.85 0.14 -0.60 16 18 C 0.09 1.92 6.19 41.41 0.26 2.17 16 19 C -0.28 -5.87 10.72 21.99 0.24 -5.63 16 20 C 0.04 0.88 12.03 85.24 1.02 1.90 16 21 N -0.34 -8.39 12.58 -57.03 -0.72 -9.10 16 22 N -0.38 -8.71 4.01 -356.04 -1.43 -10.14 16 23 C 0.09 1.46 11.27 127.77 1.44 2.90 16 24 H 0.02 1.22 7.85 -2.39 -0.02 1.20 16 25 H 0.05 2.00 5.64 -2.39 -0.01 1.99 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 3.75 5.95 -2.39 -0.01 3.74 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.40 13.02 8.54 -92.71 -0.79 12.23 16 31 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.85 6.90 -2.39 -0.02 1.83 16 34 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 35 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 36 H 0.21 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.42 6.97 -2.39 -0.02 1.40 16 Total: -1.00 -67.82 322.72 3.48 -64.34 By element: Atomic # 1 Polarization: 24.56 SS G_CDS: 0.26 Total: 24.82 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.38 Total: -7.20 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.14 Total: -100.00 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.04 Total: -25.36 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.38 kcal Total: -67.82 3.48 -64.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131994320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.501 kcal (2) G-P(sol) polarization free energy of solvation -67.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds