Wall clock time and date at job start Mon Mar 30 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 C 1.53006 * 109.46959 * 179.97438 * 16 14 13 18 18 C 1.50695 * 109.47173 * 180.02562 * 17 16 14 19 19 C 1.35310 * 126.12932 * 84.68510 * 18 17 16 20 20 C 1.39875 * 107.92180 * 179.90187 * 19 18 17 21 21 N 1.30835 * 108.19886 * 0.37065 * 20 19 18 22 22 N 1.34947 * 126.12363 * 264.99784 * 18 17 16 23 23 C 1.46498 * 126.03889 * 359.94441 * 22 18 17 24 24 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 25 25 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 27 27 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 28 28 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 29 29 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 30 30 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 31 31 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 32 32 H 1.08996 * 109.47125 * 60.00154 * 16 14 13 33 33 H 1.09004 * 109.46682 * 300.00472 * 17 16 14 34 34 H 1.09000 * 109.46919 * 59.99667 * 17 16 14 35 35 H 1.08003 * 126.03926 * 0.04429 * 19 18 17 36 36 H 1.07996 * 125.89649 * 180.14443 * 20 19 18 37 37 H 1.09003 * 109.46884 * 89.99835 * 23 22 18 38 38 H 1.09001 * 109.47511 * 209.99618 * 23 22 18 39 39 H 1.08996 * 109.47207 * 330.00106 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 6 -1.3655 3.8887 2.5497 18 6 -1.7555 4.5595 3.8415 19 6 -1.4699 5.8335 4.1969 20 6 -2.0125 6.0582 5.4664 21 7 -2.5957 4.9560 5.8624 22 7 -2.4470 3.9953 4.8537 23 6 -2.9532 2.6211 4.8910 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.9924 1.1425 -0.6140 30 1 2.2853 2.1184 1.9978 31 1 0.0905 2.6048 3.4843 32 1 0.7469 4.1462 2.8830 33 1 -1.4015 4.6154 1.7380 34 1 -2.0586 3.0742 2.3391 35 1 -0.9220 6.5509 3.6040 36 1 -1.9562 6.9808 6.0248 37 1 -2.1980 1.9674 5.3276 38 1 -3.8594 2.5838 5.4957 39 1 -3.1788 2.2893 3.8776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131994499.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:02 Heat of formation + Delta-G solvation = 1.046097 kcal Electronic energy + Delta-G solvation = -20028.602530 eV Core-core repulsion = 16971.548442 eV Total energy + Delta-G solvation = -3057.054088 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18935 -40.75090 -37.19737 -35.03793 -34.44597 -33.89267 -33.07606 -30.35914 -29.03252 -27.57861 -25.69378 -24.14262 -22.19578 -22.03812 -21.16030 -20.53870 -19.76406 -18.11967 -17.28699 -17.17576 -16.66843 -16.33884 -15.66734 -15.35239 -15.07296 -14.84782 -14.54962 -14.42215 -14.27218 -13.94793 -13.67795 -13.49467 -13.26929 -13.13633 -12.95430 -12.72354 -12.46209 -12.29086 -12.06858 -11.70126 -11.57443 -11.47368 -10.97069 -10.70169 -10.65526 -10.21100 -9.76142 -9.45884 -8.77566 -6.46578 0.88165 1.41582 1.51349 1.64705 1.68471 1.82816 1.89548 2.40317 2.54883 3.03567 3.58862 3.73414 3.94692 4.00055 4.22060 4.31637 4.36260 4.39287 4.40301 4.51302 4.59570 4.64475 4.67737 4.83813 4.89564 4.91268 5.06593 5.10565 5.20835 5.29644 5.31449 5.56055 5.67984 5.68908 5.76280 6.00733 6.09603 6.52503 6.76191 6.89852 7.29352 7.50021 8.61475 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.036255 B = 0.004033 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.115757 B = 6941.521977 C = 7260.233753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C 0.246 3.754 4 H 0.026 0.974 5 C -0.605 4.605 6 H 0.039 0.961 7 C -0.011 4.011 8 N -0.937 5.937 9 Si 1.080 2.920 10 H -0.258 1.258 11 H -0.263 1.263 12 H -0.288 1.288 13 N -0.706 5.706 14 C 0.503 3.497 15 O -0.579 6.579 16 C -0.120 4.120 17 C -0.032 4.032 18 C 0.085 3.915 19 C -0.284 4.284 20 C 0.042 3.958 21 N -0.335 5.335 22 N -0.379 5.379 23 C 0.088 3.912 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.257 0.743 30 H 0.402 0.598 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.208 0.792 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.554 4.843 11.874 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.141 3.859 4 H 0.044 0.956 5 C -0.644 4.644 6 H 0.058 0.942 7 C -0.211 4.211 8 N -0.573 5.573 9 Si 0.904 3.096 10 H -0.184 1.184 11 H -0.188 1.188 12 H -0.215 1.215 13 N -0.354 5.354 14 C 0.290 3.710 15 O -0.461 6.461 16 C -0.161 4.161 17 C -0.071 4.071 18 C -0.043 4.043 19 C -0.313 4.313 20 C -0.143 4.143 21 N -0.157 5.157 22 N -0.162 5.162 23 C -0.052 4.052 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.236 0.764 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.178 0.822 36 H 0.225 0.775 37 H 0.104 0.896 38 H 0.114 0.886 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.750 3.451 10.664 20.154 hybrid contribution 1.408 1.109 1.288 2.207 sum -15.343 4.560 11.952 19.976 Atomic orbital electron populations 1.21776 0.95054 1.00540 1.01739 1.22152 0.95832 0.98321 1.01085 1.18883 0.93235 0.89836 0.83990 0.95628 1.22404 0.91848 1.46421 1.03696 0.94248 1.26853 0.97676 0.93670 1.02860 1.70933 1.05455 1.44870 1.36036 0.83540 0.74416 0.78470 0.73217 1.18350 1.18838 1.21497 1.46130 1.15931 1.56366 1.17008 1.21077 0.81374 0.78175 0.90339 1.90658 1.51711 1.60940 1.42746 1.21545 0.97908 1.01950 0.94675 1.19862 0.95461 1.00587 0.91187 1.21221 0.96575 0.94535 0.91940 1.21583 1.13029 0.97164 0.99556 1.24321 0.96334 0.97740 0.95871 1.77294 1.26178 0.99386 1.12865 1.48785 1.43119 1.11951 1.12304 1.22136 1.01332 0.76468 1.05289 0.94139 0.92385 0.92655 0.93316 0.92274 0.93368 0.76359 0.87539 0.87287 0.88939 0.89780 0.82218 0.77497 0.89617 0.88582 0.88073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.52 71.98 0.61 -4.16 16 2 C -0.14 -5.57 5.20 30.59 0.16 -5.41 16 3 C 0.25 11.14 1.81 44.24 0.08 11.22 16 4 H 0.03 1.30 6.07 -2.39 -0.01 1.29 16 5 C -0.61 -32.35 9.09 25.60 0.23 -32.12 16 6 H 0.04 2.23 7.95 -2.91 -0.02 2.20 16 7 C -0.01 -0.62 5.42 84.65 0.46 -0.16 16 8 N -0.94 -56.61 13.70 21.45 0.29 -56.32 16 9 Si 1.08 50.22 25.39 68.60 1.74 51.97 16 10 H -0.26 -11.02 6.73 99.48 0.67 -10.35 16 11 H -0.26 -11.74 6.38 99.48 0.63 -11.11 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 N -0.71 -25.76 5.03 -446.10 -2.24 -28.01 16 14 C 0.50 16.21 6.42 87.66 0.56 16.77 16 15 O -0.58 -22.31 13.12 -3.02 -0.04 -22.35 16 16 C -0.12 -2.63 5.68 29.85 0.17 -2.46 16 17 C -0.03 -0.66 4.79 29.85 0.14 -0.52 16 18 C 0.09 1.82 6.18 41.40 0.26 2.08 16 19 C -0.28 -5.83 10.72 21.99 0.24 -5.60 16 20 C 0.04 0.85 12.03 85.24 1.03 1.88 16 21 N -0.34 -8.14 12.58 -57.02 -0.72 -8.86 16 22 N -0.38 -8.17 4.01 -356.05 -1.43 -9.60 16 23 C 0.09 1.27 11.27 127.77 1.44 2.71 16 24 H 0.04 1.54 7.87 -2.38 -0.02 1.52 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.89 5.64 -2.39 -0.01 1.88 16 27 H 0.05 2.10 4.43 -2.39 -0.01 2.09 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.26 15.56 8.72 -92.71 -0.81 14.75 16 30 H 0.40 13.11 8.53 -92.71 -0.79 12.32 16 31 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.09 2.09 8.10 -2.38 -0.02 2.07 16 34 H 0.08 1.73 6.91 -2.39 -0.02 1.72 16 35 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.19 6.98 -2.39 -0.02 1.17 16 Total: -1.00 -69.41 317.33 3.10 -66.31 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 0.12 Total: 22.62 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 5.38 Total: -15.77 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -4.09 Total: -102.78 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.35 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 1.74 Total: 51.97 kcal Total: -69.41 3.10 -66.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131994499.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.355 kcal (2) G-P(sol) polarization free energy of solvation -69.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds