Wall clock time and date at job start Mon Mar 30 2020 04:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31192 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48498 * 109.47263 * 270.00157 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00478 * 3 2 1 6 6 H 1.48500 * 109.47143 * 150.00239 * 3 2 1 7 7 C 1.39558 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.41194 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.41800 * 126.63557 * 0.02562 * 9 7 2 11 11 N 1.30262 * 108.25224 * 179.97438 * 10 9 7 12 12 N 1.39851 * 109.54292 * 359.74681 * 11 10 9 13 13 C 1.46494 * 125.70312 * 180.28348 * 12 11 10 14 14 H 1.08997 * 108.78501 * 178.57907 * 13 12 11 15 15 C 1.54061 * 108.81695 * 60.16988 * 13 12 11 16 16 C 1.50480 * 112.49871 * 197.42085 * 15 13 12 17 17 C 1.54239 * 108.51304 * 94.15460 * 16 15 13 18 18 C 1.45541 * 112.40575 * 280.01058 * 17 16 15 19 19 C 1.54236 * 112.41065 * 61.93934 * 18 17 16 20 20 C 1.50472 * 108.52301 * 280.01739 * 19 18 17 21 21 H 1.09005 * 108.87636 * 333.36914 * 20 19 18 22 22 O 1.42901 * 108.87791 * 214.92610 * 20 19 18 23 23 C 1.35153 * 108.59437 * 0.42667 * 12 11 10 24 24 N 1.37732 * 126.56187 * 179.84965 * 23 12 11 25 25 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.07994 * 125.87539 * 0.02562 * 10 9 7 27 27 H 1.09002 * 108.87949 * 318.19937 * 15 13 12 28 28 H 1.08997 * 108.87643 * 76.74391 * 15 13 12 29 29 H 1.08995 * 109.62458 * 213.85838 * 16 15 13 30 30 H 1.08994 * 109.63099 * 334.44473 * 16 15 13 31 31 H 1.09001 * 108.90073 * 40.76952 * 17 16 15 32 32 H 1.09007 * 108.89441 * 159.35957 * 17 16 15 33 33 H 1.09005 * 108.89705 * 182.69877 * 18 17 16 34 34 H 1.09003 * 108.89732 * 301.28255 * 18 17 16 35 35 H 1.09010 * 109.62624 * 39.72183 * 19 18 17 36 36 H 1.09001 * 109.63549 * 160.29940 * 19 18 17 37 37 H 0.96691 * 114.00411 * 57.01558 * 22 20 19 38 38 H 0.97001 * 120.00364 * 179.71931 * 24 23 12 39 39 H 0.97005 * 119.99910 * 359.43627 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2459 1.6177 0.0000 4 1 2.4934 2.0465 -1.4000 5 1 1.4434 2.6527 0.7001 6 1 3.5435 1.4402 0.7000 7 6 2.0098 -1.2086 -0.0005 8 1 3.0898 -1.2085 -0.0001 9 6 1.3038 -2.4313 -0.0005 10 6 -0.1047 -2.5952 -0.0005 11 7 -0.3670 -3.8711 -0.0011 12 7 0.8297 -4.5947 -0.0073 13 6 0.9457 -6.0550 -0.0156 14 1 2.0018 -6.3231 -0.0446 15 6 0.2596 -6.6008 -1.2825 16 6 -0.0441 -8.0714 -1.1848 17 6 -1.4904 -8.2400 -0.6759 18 6 -1.5935 -8.0761 0.7666 19 6 -1.1726 -6.6664 1.2298 20 6 0.3301 -6.6097 1.2833 21 1 0.7151 -7.6150 1.4547 22 8 0.7228 -5.7747 2.3744 23 6 1.8613 -3.7216 -0.0011 24 7 3.2023 -4.0360 -0.0013 25 1 -0.4850 0.8400 0.0004 26 1 -0.8344 -1.7991 -0.0009 27 1 -0.6723 -6.0580 -1.4406 28 1 0.9141 -6.4335 -2.1379 29 1 0.0541 -8.5316 -2.1679 30 1 0.6472 -8.5424 -0.4861 31 1 -2.1243 -7.4982 -1.1617 32 1 -1.8446 -9.2357 -0.9428 33 1 -2.6256 -8.2535 1.0691 34 1 -0.9524 -8.8118 1.2522 35 1 -1.5421 -5.9232 0.5231 36 1 -1.5820 -6.4690 2.2206 37 1 0.3748 -6.0574 3.2311 38 1 3.8663 -3.3289 -0.0006 39 1 3.4827 -4.9646 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148961548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:16 Heat of formation + Delta-G solvation = 20.264567 kcal Electronic energy + Delta-G solvation = -21193.814925 eV Core-core repulsion = 18137.594213 eV Total energy + Delta-G solvation = -3056.220712 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.82996 -38.29726 -35.75644 -33.54183 -33.09718 -32.34006 -30.80893 -28.50753 -27.45728 -24.65134 -24.10981 -23.60888 -20.56809 -20.16868 -19.22805 -18.27942 -17.22850 -16.59928 -15.98518 -15.67275 -15.04519 -14.66997 -14.28026 -13.96811 -13.62028 -13.23082 -13.05721 -12.93587 -12.54523 -12.47405 -11.98570 -11.51379 -11.16183 -11.00346 -10.91936 -10.77055 -10.71015 -10.44898 -10.36854 -10.21138 -10.18614 -9.74674 -9.53097 -9.48194 -8.95496 -8.46088 -7.14845 -6.33019 -6.09288 -3.50871 3.24604 3.35002 3.38168 3.76232 3.80130 4.35430 4.39156 4.69400 4.73718 4.85569 5.00002 5.05875 5.16901 5.29968 5.35741 5.38890 5.46405 5.63898 5.85717 5.88004 5.93382 6.01222 6.11730 6.18709 6.22284 6.26723 6.37114 6.53770 6.75396 7.04087 7.26342 7.49694 7.90728 7.98798 8.10661 8.41752 8.83634 8.93874 9.07809 9.42662 9.51020 9.87458 10.92615 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034144 B = 0.005372 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.869019 B = 5211.227986 C = 5344.267366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.058 3.942 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.422 4.422 8 H 0.057 0.943 9 C -0.089 4.089 10 C 0.054 3.946 11 N -0.357 5.357 12 N -0.387 5.387 13 C 0.193 3.807 14 H 0.072 0.928 15 C -0.126 4.126 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.152 4.152 20 C 0.108 3.892 21 H 0.045 0.955 22 O -0.550 6.550 23 C 0.222 3.778 24 N -0.862 5.862 25 H 0.266 0.734 26 H 0.199 0.801 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.367 0.633 38 H 0.403 0.597 39 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.283 -15.270 0.531 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.148 4.148 3 Si 0.734 3.266 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.458 4.458 8 H 0.075 0.925 9 C -0.103 4.103 10 C -0.130 4.130 11 N -0.181 5.181 12 N -0.178 5.178 13 C 0.087 3.913 14 H 0.090 0.910 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.154 4.154 19 C -0.190 4.190 20 C 0.048 3.952 21 H 0.063 0.937 22 O -0.353 6.353 23 C 0.001 3.999 24 N -0.412 5.412 25 H 0.076 0.924 26 H 0.215 0.785 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.213 0.787 38 H 0.233 0.767 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.151 -15.685 0.048 15.727 hybrid contribution 1.318 0.953 0.541 1.714 sum 0.167 -14.732 0.589 14.744 Atomic orbital electron populations 1.69504 1.06638 1.26774 1.46548 1.25384 0.94717 0.99612 0.95127 0.86350 0.79761 0.82283 0.78186 1.20579 1.21051 1.19747 1.18322 0.92668 0.89295 1.45546 0.92523 1.17377 0.91840 0.89066 1.11995 1.24726 0.97369 0.91945 0.98991 1.76495 1.03029 1.06266 1.32308 1.47285 1.03510 1.02226 1.64747 1.21095 0.98495 0.79013 0.92661 0.90973 1.21687 1.02785 0.95602 0.96389 1.21339 0.96719 0.96174 1.01083 1.20515 0.97006 1.01492 0.96628 1.20465 1.01222 0.97152 0.96546 1.22176 0.96102 0.97601 1.03099 1.21859 0.93961 0.91724 0.87646 0.93744 1.86720 1.76127 1.55403 1.17073 1.18120 0.80851 0.90076 1.10805 1.40598 1.02692 1.08044 1.89883 0.92375 0.78496 0.89687 0.91894 0.91656 0.91937 0.91657 0.92612 0.92309 0.92776 0.88142 0.91827 0.78694 0.76745 0.80056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.13 10.32 55.53 0.57 -23.56 16 2 C 0.06 1.59 5.49 -17.33 -0.10 1.49 16 3 Si 0.91 20.89 29.56 -169.99 -5.02 15.87 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.42 -11.96 9.24 -37.97 -0.35 -12.31 16 8 H 0.06 1.53 7.36 -52.48 -0.39 1.15 16 9 C -0.09 -2.49 5.96 -106.54 -0.63 -3.13 16 10 C 0.05 1.49 10.90 -16.86 -0.18 1.31 16 11 N -0.36 -8.93 10.62 30.94 0.33 -8.61 16 12 N -0.39 -8.68 2.64 -52.13 -0.14 -8.81 16 13 C 0.19 3.32 2.79 -66.82 -0.19 3.13 16 14 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 15 C -0.13 -1.89 4.90 -27.44 -0.13 -2.02 16 16 C -0.12 -1.29 5.61 -27.34 -0.15 -1.44 16 17 C -0.12 -1.30 5.26 -29.60 -0.16 -1.45 16 18 C -0.12 -1.30 5.26 -29.60 -0.16 -1.45 16 19 C -0.15 -2.20 5.21 -27.35 -0.14 -2.34 16 20 C 0.11 1.65 2.70 -27.44 -0.07 1.58 16 21 H 0.04 0.57 6.63 -51.93 -0.34 0.23 16 22 O -0.55 -9.76 12.66 -35.23 -0.45 -10.20 16 23 C 0.22 5.44 8.06 -153.29 -1.24 4.20 16 24 N -0.86 -17.19 9.03 31.65 0.29 -16.91 16 25 H 0.27 6.97 8.30 -40.82 -0.34 6.63 16 26 H 0.20 5.70 5.76 -52.49 -0.30 5.40 16 27 H 0.08 1.47 6.27 -51.93 -0.33 1.14 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.65 6.98 -51.93 -0.36 0.29 16 31 H 0.06 0.79 7.47 -51.93 -0.39 0.40 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.54 7.46 -51.93 -0.39 0.15 16 35 H 0.10 1.78 5.65 -51.92 -0.29 1.49 16 36 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 37 H 0.37 4.80 8.84 45.56 0.40 5.21 16 38 H 0.40 7.74 8.31 -40.82 -0.34 7.40 16 39 H 0.37 6.27 7.60 -40.82 -0.31 5.96 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -32.23 301.24 -8.00 -40.22 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -4.62 Total: 19.89 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.50 Total: -12.44 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 1.05 Total: -57.88 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.45 Total: -10.20 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.23 -8.00 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148961548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.489 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds