Wall clock time and date at job start Mon Mar 30 2020 04:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31192 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48498 * 109.47263 * 270.00157 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00478 * 3 2 1 6 6 H 1.48500 * 109.47143 * 150.00239 * 3 2 1 7 7 C 1.39558 * 120.00378 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.41194 * 119.99515 * 359.97438 * 7 2 1 10 10 C 1.41800 * 126.63557 * 0.02562 * 9 7 2 11 11 N 1.30262 * 108.25224 * 179.97438 * 10 9 7 12 12 N 1.39851 * 109.54292 * 359.74681 * 11 10 9 13 13 C 1.46494 * 125.70312 * 180.28348 * 12 11 10 14 14 H 1.08997 * 108.78501 * 178.57907 * 13 12 11 15 15 C 1.54061 * 108.81695 * 60.16988 * 13 12 11 16 16 C 1.50480 * 112.49871 * 197.42085 * 15 13 12 17 17 C 1.54239 * 108.51304 * 94.15460 * 16 15 13 18 18 C 1.45541 * 112.40575 * 280.01058 * 17 16 15 19 19 C 1.54236 * 112.41065 * 61.93934 * 18 17 16 20 20 C 1.50472 * 108.52301 * 280.01739 * 19 18 17 21 21 H 1.09005 * 108.87636 * 333.36914 * 20 19 18 22 22 O 1.42901 * 108.87791 * 214.92610 * 20 19 18 23 23 C 1.35153 * 108.59437 * 0.42667 * 12 11 10 24 24 N 1.37732 * 126.56187 * 179.84965 * 23 12 11 25 25 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.07994 * 125.87539 * 0.02562 * 10 9 7 27 27 H 1.09002 * 108.87949 * 318.19937 * 15 13 12 28 28 H 1.08997 * 108.87643 * 76.74391 * 15 13 12 29 29 H 1.08995 * 109.62458 * 213.85838 * 16 15 13 30 30 H 1.08994 * 109.63099 * 334.44473 * 16 15 13 31 31 H 1.09001 * 108.90073 * 40.76952 * 17 16 15 32 32 H 1.09007 * 108.89441 * 159.35957 * 17 16 15 33 33 H 1.09005 * 108.89705 * 182.69877 * 18 17 16 34 34 H 1.09003 * 108.89732 * 301.28255 * 18 17 16 35 35 H 1.09010 * 109.62624 * 39.72183 * 19 18 17 36 36 H 1.09001 * 109.63549 * 160.29940 * 19 18 17 37 37 H 0.96691 * 114.00411 * 57.01558 * 22 20 19 38 38 H 0.97001 * 120.00364 * 179.71931 * 24 23 12 39 39 H 0.97005 * 119.99910 * 359.43627 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2459 1.6177 0.0000 4 1 2.4934 2.0465 -1.4000 5 1 1.4434 2.6527 0.7001 6 1 3.5435 1.4402 0.7000 7 6 2.0098 -1.2086 -0.0005 8 1 3.0898 -1.2085 -0.0001 9 6 1.3038 -2.4313 -0.0005 10 6 -0.1047 -2.5952 -0.0005 11 7 -0.3670 -3.8711 -0.0011 12 7 0.8297 -4.5947 -0.0073 13 6 0.9457 -6.0550 -0.0156 14 1 2.0018 -6.3231 -0.0446 15 6 0.2596 -6.6008 -1.2825 16 6 -0.0441 -8.0714 -1.1848 17 6 -1.4904 -8.2400 -0.6759 18 6 -1.5935 -8.0761 0.7666 19 6 -1.1726 -6.6664 1.2298 20 6 0.3301 -6.6097 1.2833 21 1 0.7151 -7.6150 1.4547 22 8 0.7228 -5.7747 2.3744 23 6 1.8613 -3.7216 -0.0011 24 7 3.2023 -4.0360 -0.0013 25 1 -0.4850 0.8400 0.0004 26 1 -0.8344 -1.7991 -0.0009 27 1 -0.6723 -6.0580 -1.4406 28 1 0.9141 -6.4335 -2.1379 29 1 0.0541 -8.5316 -2.1679 30 1 0.6472 -8.5424 -0.4861 31 1 -2.1243 -7.4982 -1.1617 32 1 -1.8446 -9.2357 -0.9428 33 1 -2.6256 -8.2535 1.0691 34 1 -0.9524 -8.8118 1.2522 35 1 -1.5421 -5.9232 0.5231 36 1 -1.5820 -6.4690 2.2206 37 1 0.3748 -6.0574 3.2311 38 1 3.8663 -3.3289 -0.0006 39 1 3.4827 -4.9646 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148961548.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:16 Heat of formation + Delta-G solvation = -2.789254 kcal Electronic energy + Delta-G solvation = -21194.814614 eV Core-core repulsion = 18137.594213 eV Total energy + Delta-G solvation = -3057.220401 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42226 -39.76247 -36.93828 -35.35086 -34.94200 -33.84636 -32.01693 -30.17412 -29.34599 -26.30922 -25.48788 -24.99487 -21.86665 -21.67237 -20.90080 -19.88746 -18.77175 -18.23196 -17.63446 -16.96954 -16.82105 -16.17103 -15.69349 -15.31172 -15.09502 -14.61388 -14.41274 -14.31510 -14.07848 -13.79996 -13.28803 -13.15310 -12.91483 -12.78583 -12.47937 -12.40133 -12.09615 -11.82120 -11.59726 -11.47670 -11.31947 -11.29510 -11.21402 -10.94488 -10.74327 -10.44137 -9.04322 -8.27902 -8.11329 -5.59284 1.42818 1.46670 1.58681 1.85088 2.12450 2.45206 2.61867 3.15933 3.47321 3.64233 3.74839 3.81548 3.97415 4.08978 4.10438 4.25322 4.29438 4.42094 4.55470 4.81175 4.84144 4.97856 5.06691 5.14311 5.17591 5.26154 5.27761 5.37578 5.41603 5.44253 5.52988 5.60050 5.93899 6.23822 6.36554 6.81955 6.91351 7.13936 7.17053 7.39832 7.54038 7.90684 8.91273 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.034144 B = 0.005372 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.869019 B = 5211.227986 C = 5344.267366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.005 3.995 3 Si 0.979 3.021 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.449 4.449 8 H 0.060 0.940 9 C -0.142 4.142 10 C 0.019 3.981 11 N -0.357 5.357 12 N -0.372 5.372 13 C 0.173 3.827 14 H 0.089 0.911 15 C -0.117 4.117 16 C -0.108 4.108 17 C -0.120 4.120 18 C -0.109 4.109 19 C -0.151 4.151 20 C 0.110 3.890 21 H 0.085 0.915 22 O -0.584 6.584 23 C 0.237 3.763 24 N -0.844 5.844 25 H 0.267 0.733 26 H 0.178 0.822 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.386 0.614 38 H 0.408 0.592 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 -17.939 0.730 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.197 4.197 3 Si 0.804 3.196 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.486 4.486 8 H 0.078 0.922 9 C -0.157 4.157 10 C -0.163 4.163 11 N -0.184 5.184 12 N -0.163 5.163 13 C 0.070 3.930 14 H 0.107 0.893 15 C -0.156 4.156 16 C -0.145 4.145 17 C -0.157 4.157 18 C -0.146 4.146 19 C -0.189 4.189 20 C 0.050 3.950 21 H 0.103 0.897 22 O -0.391 6.391 23 C 0.012 3.988 24 N -0.396 5.396 25 H 0.077 0.923 26 H 0.194 0.806 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.234 0.766 38 H 0.239 0.761 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.240 -18.408 0.254 18.412 hybrid contribution 0.909 1.581 0.483 1.887 sum 1.149 -16.827 0.737 16.882 Atomic orbital electron populations 1.69667 1.08032 1.27514 1.47384 1.26254 0.95624 1.03043 0.94824 0.85227 0.78451 0.77640 0.78282 1.19996 1.20684 1.18964 1.18614 0.92945 0.90297 1.46700 0.92168 1.17746 0.92317 0.90744 1.14877 1.24459 0.97436 0.92647 1.01803 1.76434 1.04228 1.05340 1.32356 1.47659 1.02144 1.04192 1.62281 1.21770 1.00260 0.75824 0.95126 0.89308 1.21628 1.00879 0.98147 0.94943 1.21337 0.97255 0.93051 1.02893 1.20522 0.96533 1.02378 0.96266 1.20424 1.02287 0.95075 0.96824 1.22113 0.95662 0.98988 1.02134 1.21968 0.94284 0.92836 0.85873 0.89741 1.86651 1.76798 1.56918 1.18712 1.18305 0.82730 0.89780 1.07952 1.40527 1.00914 1.09550 1.88650 0.92296 0.80613 0.92671 0.92229 0.89708 0.89974 0.93729 0.89878 0.91404 0.90337 0.92064 0.91858 0.76563 0.76114 0.77768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.31 10.32 21.77 0.22 -52.08 16 2 C 0.01 0.29 5.49 85.11 0.47 0.76 16 3 Si 0.98 43.83 29.56 68.60 2.03 45.86 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.45 -26.20 9.24 23.31 0.22 -25.99 16 8 H 0.06 3.31 7.36 -2.91 -0.02 3.29 16 9 C -0.14 -8.28 5.96 -21.11 -0.13 -8.40 16 10 C 0.02 1.09 10.90 85.81 0.94 2.03 16 11 N -0.36 -18.63 10.62 -56.03 -0.59 -19.23 16 12 N -0.37 -16.72 2.64 -318.84 -0.84 -17.56 16 13 C 0.17 5.65 2.79 45.71 0.13 5.78 16 14 H 0.09 2.59 6.74 -2.39 -0.02 2.58 16 15 C -0.12 -3.33 4.90 30.14 0.15 -3.18 16 16 C -0.11 -2.02 5.61 30.20 0.17 -1.85 16 17 C -0.12 -2.23 5.26 28.74 0.15 -2.08 16 18 C -0.11 -2.06 5.26 28.74 0.15 -1.91 16 19 C -0.15 -4.16 5.21 30.20 0.16 -4.00 16 20 C 0.11 3.08 2.70 30.14 0.08 3.17 16 21 H 0.09 1.76 6.63 -2.38 -0.02 1.75 16 22 O -0.58 -19.82 12.66 -148.98 -1.89 -21.70 16 23 C 0.24 11.64 8.06 133.00 1.07 12.72 16 24 N -0.84 -32.46 9.03 -53.76 -0.49 -32.95 16 25 H 0.27 14.62 8.30 -92.71 -0.77 13.85 16 26 H 0.18 10.97 5.76 -2.91 -0.02 10.96 16 27 H 0.05 1.92 6.27 -2.39 -0.01 1.90 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.26 6.98 -2.39 -0.02 1.25 16 31 H 0.04 1.02 7.47 -2.39 -0.02 1.00 16 32 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.08 1.15 7.46 -2.39 -0.02 1.14 16 35 H 0.06 2.20 5.65 -2.38 -0.01 2.19 16 36 H 0.06 1.71 7.79 -2.39 -0.02 1.69 16 37 H 0.39 9.46 8.84 -74.06 -0.65 8.80 16 38 H 0.41 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.39 12.13 7.60 -92.70 -0.70 11.43 16 Total: -1.00 -73.60 301.24 0.97 -72.63 By element: Atomic # 1 Polarization: 49.03 SS G_CDS: -1.03 Total: 48.00 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.55 Total: -22.96 kcal Atomic # 7 Polarization: -120.13 SS G_CDS: -1.70 Total: -121.83 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.89 Total: -21.70 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -73.60 0.97 -72.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148961548.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.845 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds