Wall clock time and date at job start Mon Mar 30 2020 04:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31202 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48498 * 109.47336 * 269.99778 * 3 2 1 5 5 H 1.48498 * 109.47334 * 29.99792 * 3 2 1 6 6 H 1.48497 * 109.47024 * 149.99943 * 3 2 1 7 7 C 1.39554 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.41192 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.41807 * 126.63872 * 359.97438 * 9 7 2 11 11 N 1.30252 * 108.25336 * 179.97438 * 10 9 7 12 12 N 1.39843 * 109.54672 * 359.97438 * 11 10 9 13 13 C 1.46504 * 125.70587 * 180.02562 * 12 11 10 14 14 H 1.08992 * 108.87352 * 178.62761 * 13 12 11 15 15 C 1.45545 * 108.81414 * 297.18149 * 13 12 11 16 16 C 1.54239 * 112.40404 * 182.63716 * 15 13 12 17 17 C 1.50476 * 108.52593 * 280.01355 * 16 15 13 18 18 C 1.54063 * 112.49543 * 94.14820 * 17 16 15 19 19 C 1.54062 * 112.81900 * 318.28706 * 18 17 16 20 20 C 1.50473 * 112.49935 * 318.28190 * 19 18 17 21 21 H 1.09002 * 109.62834 * 334.44408 * 20 19 18 22 22 O 1.42904 * 109.78891 * 213.95513 * 20 19 18 23 23 C 1.35158 * 108.59644 * 0.26421 * 12 11 10 24 24 N 1.37734 * 126.56223 * 179.71734 * 23 12 11 25 25 H 0.96999 * 120.00039 * 0.02562 * 1 2 3 26 26 H 1.07994 * 125.87035 * 359.97065 * 10 9 7 27 27 H 1.08999 * 108.89599 * 303.39273 * 15 13 12 28 28 H 1.09005 * 108.89281 * 61.98129 * 15 13 12 29 29 H 1.08996 * 109.62813 * 39.72491 * 16 15 13 30 30 H 1.09004 * 109.62763 * 160.30493 * 16 15 13 31 31 H 1.08996 * 108.87758 * 214.93524 * 17 16 15 32 32 H 1.09003 * 108.87215 * 333.47235 * 17 16 15 33 33 H 1.09006 * 108.81048 * 79.14753 * 18 17 16 34 34 H 1.09000 * 108.81244 * 197.53203 * 18 17 16 35 35 H 1.09003 * 108.87666 * 197.50155 * 19 18 17 36 36 H 1.08999 * 108.87852 * 79.05959 * 19 18 17 37 37 H 0.96697 * 113.99665 * 60.48935 * 22 20 19 38 38 H 0.96997 * 120.00308 * 359.97438 * 24 23 12 39 39 H 0.96996 * 119.99657 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2459 1.6178 0.0000 4 1 2.4935 2.0465 -1.4000 5 1 1.4433 2.6527 0.7000 6 1 3.5434 1.4403 0.7000 7 6 2.0098 -1.2086 0.0005 8 1 3.0898 -1.2085 0.0010 9 6 1.3038 -2.4313 0.0005 10 6 -0.1047 -2.5952 0.0005 11 7 -0.3670 -3.8711 0.0000 12 7 0.8296 -4.5947 -0.0010 13 6 0.9457 -6.0551 -0.0024 14 1 2.0014 -6.3249 -0.0276 15 6 0.3558 -6.5740 1.2229 16 6 0.4917 -8.1061 1.3377 17 6 -0.5789 -8.7455 0.4955 18 6 -0.0844 -9.0947 -0.9212 19 6 0.7947 -7.9893 -1.5365 20 6 0.2580 -6.6097 -1.2667 21 1 -0.8188 -6.6608 -1.1053 22 8 0.5368 -5.7561 -2.3783 23 6 1.8613 -3.7216 0.0049 24 7 3.2023 -4.0360 0.0115 25 1 -0.4850 0.8400 -0.0004 26 1 -0.8344 -1.7991 0.0010 27 1 0.8505 -6.1108 2.0765 28 1 -0.7021 -6.3123 1.2437 29 1 1.4733 -8.4146 0.9783 30 1 0.3681 -8.4077 2.3779 31 1 -0.9157 -9.6584 0.9866 32 1 -1.4210 -8.0582 0.4142 33 1 0.4933 -10.0179 -0.8742 34 1 -0.9487 -9.2540 -1.5659 35 1 0.8499 -8.1417 -2.6144 36 1 1.7991 -8.0646 -1.1199 37 1 0.1388 -6.0498 -3.2092 38 1 3.4827 -4.9646 0.0126 39 1 3.8662 -3.3289 0.0157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148961778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:18 Heat of formation + Delta-G solvation = 20.123727 kcal Electronic energy + Delta-G solvation = -21053.747107 eV Core-core repulsion = 17997.520287 eV Total energy + Delta-G solvation = -3056.226820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94291 -38.31387 -35.65969 -33.62696 -33.10702 -32.44432 -30.92978 -28.50727 -27.42396 -24.70320 -24.30719 -23.49203 -21.08122 -19.59794 -19.22155 -18.68484 -17.11401 -16.85001 -16.03942 -15.39689 -15.03799 -14.66930 -14.48846 -14.12254 -13.78744 -13.27307 -13.09129 -12.99898 -12.59948 -12.37596 -12.18080 -11.31065 -11.19029 -11.09416 -10.95409 -10.83379 -10.71968 -10.56261 -10.53339 -10.41095 -10.23078 -9.72206 -9.57290 -9.48695 -8.95657 -8.46839 -7.15916 -6.33213 -6.09017 -3.50829 3.24952 3.35237 3.38196 3.75033 3.78531 4.29479 4.38081 4.69282 4.72316 4.77349 4.90414 5.03376 5.07840 5.12727 5.21948 5.33678 5.43247 5.64827 5.67920 5.79305 5.88475 5.92491 6.01625 6.05314 6.08820 6.19005 6.29873 6.31864 6.52971 7.03866 7.26196 7.49743 7.90753 7.99285 8.10342 8.41825 8.83566 8.94005 9.07539 9.42774 9.51064 9.87804 10.92901 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038137 B = 0.005030 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.028321 B = 5565.011751 C = 5580.166646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.058 3.942 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.422 4.422 8 H 0.057 0.943 9 C -0.088 4.088 10 C 0.053 3.947 11 N -0.357 5.357 12 N -0.392 5.392 13 C 0.200 3.800 14 H 0.072 0.928 15 C -0.132 4.132 16 C -0.114 4.114 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.152 4.152 20 C 0.105 3.895 21 H 0.061 0.939 22 O -0.543 6.543 23 C 0.219 3.781 24 N -0.862 5.862 25 H 0.266 0.734 26 H 0.199 0.801 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.367 0.633 38 H 0.374 0.626 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.141 -16.286 -0.715 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.075 0.925 9 C -0.102 4.102 10 C -0.131 4.131 11 N -0.181 5.181 12 N -0.182 5.182 13 C 0.096 3.904 14 H 0.090 0.910 15 C -0.170 4.170 16 C -0.152 4.152 17 C -0.162 4.162 18 C -0.151 4.151 19 C -0.190 4.190 20 C 0.045 3.955 21 H 0.079 0.921 22 O -0.346 6.346 23 C -0.001 4.001 24 N -0.412 5.412 25 H 0.076 0.924 26 H 0.215 0.785 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.212 0.788 38 H 0.199 0.801 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.291 -16.686 -0.250 16.691 hybrid contribution 1.296 0.923 -0.514 1.672 sum 1.587 -15.763 -0.764 15.861 Atomic orbital electron populations 1.69511 1.06648 1.26793 1.46479 1.25391 0.94720 0.99630 0.95099 0.86343 0.79727 0.82250 0.78222 1.20557 1.21044 1.19742 1.18322 0.92677 0.89282 1.45580 0.92491 1.17387 0.91823 0.89080 1.11895 1.24730 0.97386 0.91928 0.99028 1.76579 1.03051 1.06401 1.32077 1.47423 1.03544 1.02288 1.64966 1.19497 0.98824 0.78957 0.93141 0.91033 1.20888 1.03602 0.94941 0.97562 1.21306 0.99360 0.94671 0.99895 1.21411 0.99043 1.00772 0.94931 1.21860 0.99313 0.97753 0.96185 1.22163 1.00389 0.95333 1.01138 1.21726 0.98790 0.87599 0.87391 0.92073 1.86749 1.77257 1.52095 1.18523 1.18124 0.80848 0.90088 1.11069 1.40588 1.02677 1.08018 1.89961 0.92357 0.78453 0.91251 0.90258 0.91714 0.91475 0.92200 0.91568 0.92161 0.92225 0.91465 0.91652 0.78770 0.80088 0.76728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.24 10.32 55.53 0.57 -23.67 16 2 C 0.06 1.59 5.49 -17.33 -0.10 1.50 16 3 Si 0.91 20.93 29.56 -169.99 -5.02 15.91 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.42 -12.03 9.24 -37.97 -0.35 -12.38 16 8 H 0.06 1.54 7.36 -52.49 -0.39 1.16 16 9 C -0.09 -2.49 5.96 -106.54 -0.63 -3.13 16 10 C 0.05 1.51 10.90 -16.86 -0.18 1.33 16 11 N -0.36 -9.25 12.26 30.94 0.38 -8.87 16 12 N -0.39 -8.96 2.59 -56.02 -0.15 -9.11 16 13 C 0.20 3.47 2.28 -70.80 -0.16 3.31 16 14 H 0.07 1.16 6.07 -51.93 -0.32 0.85 16 15 C -0.13 -2.00 4.69 -29.60 -0.14 -2.14 16 16 C -0.11 -1.25 5.61 -27.34 -0.15 -1.41 16 17 C -0.12 -1.25 5.32 -27.44 -0.15 -1.40 16 18 C -0.11 -1.07 5.85 -25.62 -0.15 -1.22 16 19 C -0.15 -1.72 5.06 -27.44 -0.14 -1.86 16 20 C 0.11 1.62 2.86 -27.35 -0.08 1.54 16 21 H 0.06 0.99 6.97 -51.93 -0.36 0.62 16 22 O -0.54 -9.72 12.68 -35.23 -0.45 -10.17 16 23 C 0.22 5.42 8.06 -153.29 -1.24 4.18 16 24 N -0.86 -17.25 9.03 31.66 0.29 -16.97 16 25 H 0.27 7.00 8.30 -40.82 -0.34 6.66 16 26 H 0.20 5.78 5.76 -52.49 -0.30 5.48 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.08 1.34 7.46 -51.93 -0.39 0.95 16 29 H 0.06 0.66 6.98 -51.93 -0.36 0.30 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.75 6.62 -51.93 -0.34 0.41 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.69 7.86 -51.93 -0.41 0.28 16 36 H 0.06 0.73 6.63 -51.93 -0.34 0.39 16 37 H 0.37 4.78 8.95 45.56 0.41 5.19 16 38 H 0.37 6.26 7.60 -40.82 -0.31 5.95 16 39 H 0.40 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -32.99 304.67 -7.96 -40.95 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -4.70 Total: 19.00 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -3.47 Total: -11.67 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 1.09 Total: -58.62 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.45 Total: -10.17 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.99 -7.96 -40.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148961778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.071 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds