Wall clock time and date at job start Mon Mar 30 2020 04:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31202 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48498 * 109.47336 * 269.99778 * 3 2 1 5 5 H 1.48498 * 109.47334 * 29.99792 * 3 2 1 6 6 H 1.48497 * 109.47024 * 149.99943 * 3 2 1 7 7 C 1.39554 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.41192 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.41807 * 126.63872 * 359.97438 * 9 7 2 11 11 N 1.30252 * 108.25336 * 179.97438 * 10 9 7 12 12 N 1.39843 * 109.54672 * 359.97438 * 11 10 9 13 13 C 1.46504 * 125.70587 * 180.02562 * 12 11 10 14 14 H 1.08992 * 108.87352 * 178.62761 * 13 12 11 15 15 C 1.45545 * 108.81414 * 297.18149 * 13 12 11 16 16 C 1.54239 * 112.40404 * 182.63716 * 15 13 12 17 17 C 1.50476 * 108.52593 * 280.01355 * 16 15 13 18 18 C 1.54063 * 112.49543 * 94.14820 * 17 16 15 19 19 C 1.54062 * 112.81900 * 318.28706 * 18 17 16 20 20 C 1.50473 * 112.49935 * 318.28190 * 19 18 17 21 21 H 1.09002 * 109.62834 * 334.44408 * 20 19 18 22 22 O 1.42904 * 109.78891 * 213.95513 * 20 19 18 23 23 C 1.35158 * 108.59644 * 0.26421 * 12 11 10 24 24 N 1.37734 * 126.56223 * 179.71734 * 23 12 11 25 25 H 0.96999 * 120.00039 * 0.02562 * 1 2 3 26 26 H 1.07994 * 125.87035 * 359.97065 * 10 9 7 27 27 H 1.08999 * 108.89599 * 303.39273 * 15 13 12 28 28 H 1.09005 * 108.89281 * 61.98129 * 15 13 12 29 29 H 1.08996 * 109.62813 * 39.72491 * 16 15 13 30 30 H 1.09004 * 109.62763 * 160.30493 * 16 15 13 31 31 H 1.08996 * 108.87758 * 214.93524 * 17 16 15 32 32 H 1.09003 * 108.87215 * 333.47235 * 17 16 15 33 33 H 1.09006 * 108.81048 * 79.14753 * 18 17 16 34 34 H 1.09000 * 108.81244 * 197.53203 * 18 17 16 35 35 H 1.09003 * 108.87666 * 197.50155 * 19 18 17 36 36 H 1.08999 * 108.87852 * 79.05959 * 19 18 17 37 37 H 0.96697 * 113.99665 * 60.48935 * 22 20 19 38 38 H 0.96997 * 120.00308 * 359.97438 * 24 23 12 39 39 H 0.96996 * 119.99657 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3120 0.0000 0.0000 3 14 2.2459 1.6178 0.0000 4 1 2.4935 2.0465 -1.4000 5 1 1.4433 2.6527 0.7000 6 1 3.5434 1.4403 0.7000 7 6 2.0098 -1.2086 0.0005 8 1 3.0898 -1.2085 0.0010 9 6 1.3038 -2.4313 0.0005 10 6 -0.1047 -2.5952 0.0005 11 7 -0.3670 -3.8711 0.0000 12 7 0.8296 -4.5947 -0.0010 13 6 0.9457 -6.0551 -0.0024 14 1 2.0014 -6.3249 -0.0276 15 6 0.3558 -6.5740 1.2229 16 6 0.4917 -8.1061 1.3377 17 6 -0.5789 -8.7455 0.4955 18 6 -0.0844 -9.0947 -0.9212 19 6 0.7947 -7.9893 -1.5365 20 6 0.2580 -6.6097 -1.2667 21 1 -0.8188 -6.6608 -1.1053 22 8 0.5368 -5.7561 -2.3783 23 6 1.8613 -3.7216 0.0049 24 7 3.2023 -4.0360 0.0115 25 1 -0.4850 0.8400 -0.0004 26 1 -0.8344 -1.7991 0.0010 27 1 0.8505 -6.1108 2.0765 28 1 -0.7021 -6.3123 1.2437 29 1 1.4733 -8.4146 0.9783 30 1 0.3681 -8.4077 2.3779 31 1 -0.9157 -9.6584 0.9866 32 1 -1.4210 -8.0582 0.4142 33 1 0.4933 -10.0179 -0.8742 34 1 -0.9487 -9.2540 -1.5659 35 1 0.8499 -8.1417 -2.6144 36 1 1.7991 -8.0646 -1.1199 37 1 0.1388 -6.0498 -3.2092 38 1 3.4827 -4.9646 0.0126 39 1 3.8662 -3.3289 0.0157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148961778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:18 Heat of formation + Delta-G solvation = -3.798042 kcal Electronic energy + Delta-G solvation = -21054.784432 eV Core-core repulsion = 17997.520287 eV Total energy + Delta-G solvation = -3057.264145 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53655 -39.81218 -36.87866 -35.37504 -34.96728 -33.96217 -32.06148 -30.21570 -29.33364 -26.35685 -25.38001 -25.02604 -22.59224 -21.15438 -20.53187 -20.34860 -18.88216 -18.21350 -17.84324 -16.95390 -16.58253 -16.22549 -15.73119 -15.27212 -15.19757 -14.80628 -14.53129 -14.31565 -14.21065 -13.76073 -13.32422 -13.12187 -12.82414 -12.72525 -12.44732 -12.31390 -12.19859 -11.83081 -11.69032 -11.53745 -11.45730 -11.36101 -11.33849 -10.96206 -10.73924 -10.49206 -9.08986 -8.31078 -8.12149 -5.60871 1.42915 1.46926 1.59125 1.82721 2.07368 2.45021 2.60202 3.08636 3.46212 3.65357 3.71872 3.78018 4.00845 4.06750 4.08169 4.18360 4.25625 4.36355 4.53523 4.74029 4.81634 4.90449 5.01343 5.08673 5.10323 5.19416 5.22422 5.29205 5.36718 5.39278 5.45365 5.51466 5.92119 6.21050 6.33950 6.79887 6.89607 7.12260 7.14260 7.38594 7.51656 7.87658 8.90663 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.038137 B = 0.005030 C = 0.005017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.028321 B = 5565.011751 C = 5580.166646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.005 3.995 3 Si 0.981 3.019 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.450 4.450 8 H 0.062 0.938 9 C -0.141 4.141 10 C 0.020 3.980 11 N -0.367 5.367 12 N -0.379 5.379 13 C 0.185 3.815 14 H 0.089 0.911 15 C -0.127 4.127 16 C -0.102 4.102 17 C -0.126 4.126 18 C -0.109 4.109 19 C -0.144 4.144 20 C 0.110 3.890 21 H 0.048 0.952 22 O -0.578 6.578 23 C 0.236 3.764 24 N -0.843 5.843 25 H 0.268 0.732 26 H 0.179 0.821 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.386 0.614 38 H 0.394 0.606 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.866 -18.763 -0.884 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.197 4.197 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.486 4.486 8 H 0.080 0.920 9 C -0.155 4.155 10 C -0.162 4.162 11 N -0.194 5.194 12 N -0.169 5.169 13 C 0.083 3.917 14 H 0.107 0.893 15 C -0.165 4.165 16 C -0.140 4.140 17 C -0.163 4.163 18 C -0.147 4.147 19 C -0.182 4.182 20 C 0.050 3.950 21 H 0.066 0.934 22 O -0.385 6.385 23 C 0.011 3.989 24 N -0.396 5.396 25 H 0.078 0.922 26 H 0.196 0.804 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.222 0.778 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.018 -19.221 -0.428 19.331 hybrid contribution 0.779 1.505 -0.464 1.757 sum 2.797 -17.716 -0.891 17.958 Atomic orbital electron populations 1.69669 1.08088 1.27596 1.47240 1.26279 0.95630 1.03122 0.94713 0.85204 0.78490 0.77510 0.78265 1.20117 1.20593 1.18788 1.18619 0.93012 0.90220 1.46777 0.92012 1.17769 0.92240 0.90800 1.14726 1.24473 0.97549 0.92487 1.01648 1.76466 1.04516 1.05715 1.32656 1.47848 1.02205 1.04356 1.62536 1.20142 1.00522 0.75620 0.95401 0.89292 1.20835 1.01539 0.98393 0.95728 1.21276 1.00681 0.90716 1.01357 1.21422 0.98039 1.01231 0.95611 1.21861 0.99589 0.97733 0.95501 1.22059 1.00765 0.92883 1.02480 1.21713 0.98016 0.89498 0.85781 0.93375 1.86674 1.77838 1.53863 1.20085 1.18317 0.82752 0.89763 1.08036 1.40515 1.00824 1.09580 1.88656 0.92233 0.80446 0.92926 0.92612 0.89994 0.89918 0.89900 0.93535 0.89740 0.91570 0.89952 0.90917 0.76589 0.77757 0.76011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.42 10.32 21.77 0.22 -52.19 16 2 C 0.01 0.29 5.49 85.10 0.47 0.76 16 3 Si 0.98 43.76 29.56 68.60 2.03 45.79 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.45 -26.30 9.24 23.31 0.22 -26.08 16 8 H 0.06 3.39 7.36 -2.91 -0.02 3.37 16 9 C -0.14 -8.26 5.96 -21.10 -0.13 -8.38 16 10 C 0.02 1.22 10.90 85.81 0.94 2.15 16 11 N -0.37 -19.79 12.26 -56.03 -0.69 -20.47 16 12 N -0.38 -17.47 2.59 -331.13 -0.86 -18.33 16 13 C 0.19 6.20 2.28 43.13 0.10 6.30 16 14 H 0.09 2.65 6.07 -2.39 -0.01 2.64 16 15 C -0.13 -3.74 4.69 28.74 0.13 -3.60 16 16 C -0.10 -1.93 5.61 30.20 0.17 -1.76 16 17 C -0.13 -2.14 5.32 30.14 0.16 -1.98 16 18 C -0.11 -1.63 5.85 31.31 0.18 -1.44 16 19 C -0.14 -2.75 5.06 30.14 0.15 -2.60 16 20 C 0.11 3.22 2.86 30.20 0.09 3.30 16 21 H 0.05 1.53 6.97 -2.39 -0.02 1.52 16 22 O -0.58 -20.20 12.68 -148.98 -1.89 -22.08 16 23 C 0.24 11.72 8.06 133.00 1.07 12.79 16 24 N -0.84 -32.52 9.03 -53.76 -0.49 -33.00 16 25 H 0.27 14.66 8.30 -92.71 -0.77 13.89 16 26 H 0.18 11.17 5.76 -2.91 -0.02 11.16 16 27 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.91 7.46 -2.38 -0.02 1.89 16 29 H 0.08 1.31 6.98 -2.39 -0.02 1.29 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.99 6.62 -2.39 -0.02 0.97 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 1.38 7.86 -2.39 -0.02 1.36 16 36 H 0.07 1.31 6.63 -2.39 -0.02 1.30 16 37 H 0.39 9.67 8.95 -74.06 -0.66 9.01 16 38 H 0.39 12.14 7.60 -92.71 -0.70 11.43 16 39 H 0.41 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.86 304.67 0.84 -74.01 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -1.04 Total: 46.83 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 3.55 Total: -20.55 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -1.81 Total: -124.00 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.89 Total: -22.08 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.86 0.84 -74.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148961778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.215 kcal (2) G-P(sol) polarization free energy of solvation -74.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds