Wall clock time and date at job start Mon Mar 30 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99750 * 4 3 2 6 6 N 1.46898 * 109.47386 * 64.99626 * 4 3 2 7 7 C 1.50701 * 109.47011 * 185.00033 * 4 3 2 8 8 O 1.21281 * 119.99748 * 259.99378 * 7 4 3 9 9 N 1.34773 * 120.00269 * 80.00275 * 7 4 3 10 10 C 1.47083 * 120.87820 * 359.71347 * 9 7 4 11 11 C 1.53698 * 108.27217 * 128.75929 * 10 9 7 12 12 N 1.46907 * 109.25748 * 54.08361 * 11 10 9 13 13 C 1.46899 * 110.99873 * 172.60388 * 12 11 10 14 14 C 1.50697 * 109.47415 * 294.30022 * 13 12 11 15 15 H 1.08000 * 119.99646 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00175 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99401 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00086 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47179 * 60.00484 * 18 16 14 20 20 H 1.48505 * 109.47118 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47201 * 300.00202 * 18 16 14 22 22 C 1.46899 * 111.26704 * 296.75761 * 12 11 10 23 23 C 1.47072 * 120.88211 * 180.02562 * 9 7 4 24 24 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.00898 * 111.00578 * 296.04915 * 6 4 3 28 28 H 1.00908 * 110.99685 * 60.00149 * 6 4 3 29 29 H 1.08995 * 109.63283 * 248.52664 * 10 9 7 30 30 H 1.09000 * 109.62888 * 9.11054 * 10 9 7 31 31 H 1.09001 * 109.64993 * 294.08024 * 11 10 9 32 32 H 1.09000 * 109.41883 * 173.94731 * 11 10 9 33 33 H 1.08996 * 109.47196 * 54.30382 * 13 12 11 34 34 H 1.09003 * 109.46444 * 174.30319 * 13 12 11 35 35 H 0.97002 * 119.99584 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.49078 * 303.14001 * 22 12 11 37 37 H 1.09004 * 109.51139 * 183.07931 * 22 12 11 38 38 H 1.09001 * 109.63150 * 350.89299 * 23 9 7 39 39 H 1.09003 * 109.63241 * 111.47204 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7223 -2.0991 0.4754 6 7 2.7681 -1.8414 -1.6091 7 6 4.6585 -1.4416 -0.1354 8 8 5.3481 -1.4163 -1.1328 9 7 5.2355 -1.4906 1.0816 10 6 4.4180 -1.5159 2.3040 11 6 4.8901 -2.6908 3.1753 12 7 6.3376 -2.5772 3.3989 13 6 6.8007 -3.5788 4.3686 14 6 6.1980 -3.2872 5.7186 15 1 5.5367 -2.4426 5.8437 16 6 6.4899 -4.0994 6.7939 17 7 7.2948 -5.1282 6.6413 18 14 5.7423 -3.7383 8.4672 19 1 4.2615 -3.7911 8.3695 20 1 6.2105 -4.7508 9.4475 21 1 6.1610 -2.3858 8.9151 22 6 7.0817 -2.6829 2.1367 23 6 6.6993 -1.5134 1.2227 24 1 -1.0498 -0.0004 0.0001 25 1 3.0090 0.6649 -0.7843 26 1 3.0092 0.3479 0.9672 27 1 1.7645 -1.8963 -1.6965 28 1 3.1587 -1.2258 -2.3067 29 1 4.5432 -0.5795 2.8477 30 1 3.3692 -1.6521 2.0404 31 1 4.6729 -3.6320 2.6703 32 1 4.3708 -2.6632 4.1332 33 1 6.4933 -4.5717 4.0402 34 1 7.8877 -3.5400 4.4399 35 1 7.5005 -5.6994 7.3979 36 1 6.8339 -3.6242 1.6462 37 1 8.1519 -2.6500 2.3411 38 1 7.1595 -1.6479 0.2438 39 1 7.0392 -0.5767 1.6646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162840326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:37 Heat of formation + Delta-G solvation = 30.531880 kcal Electronic energy + Delta-G solvation = -20222.709787 eV Core-core repulsion = 17166.934298 eV Total energy + Delta-G solvation = -3055.775488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27047 -37.73222 -36.17649 -34.43591 -32.80906 -32.43887 -30.88213 -29.06654 -28.18581 -25.90414 -24.33549 -23.22178 -21.85253 -20.41396 -18.88579 -18.39073 -17.61174 -16.42029 -16.03291 -15.45753 -15.12848 -14.72026 -14.66883 -14.41957 -14.15061 -14.10089 -13.78771 -13.54346 -13.17574 -12.68446 -12.42093 -12.04240 -11.91827 -11.31012 -11.08803 -11.00430 -10.79634 -10.77729 -10.62858 -10.56686 -10.49571 -9.92100 -9.68971 -9.31511 -8.94216 -8.53484 -8.45433 -7.35505 -6.07925 -4.10294 2.33694 2.50894 2.72640 3.02546 3.29408 3.34403 3.36315 3.98433 4.35316 4.36838 4.58263 4.69828 4.72381 4.84603 5.21982 5.28064 5.28793 5.37143 5.40713 5.55167 5.62758 5.66778 5.72582 5.84140 6.00295 6.26739 6.42063 6.43470 6.62502 6.80255 7.19617 7.20607 7.26224 7.27597 7.50254 7.71645 7.99061 8.09672 8.22211 8.44997 8.96469 9.54280 11.02865 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.004488 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.580598 B = 6237.853982 C = 7105.451090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.191 4.191 3 C -0.044 4.044 4 C 0.081 3.919 5 H 0.109 0.891 6 N -0.824 5.824 7 C 0.522 3.478 8 O -0.538 6.538 9 N -0.605 5.605 10 C 0.105 3.895 11 C 0.049 3.951 12 N -0.535 5.535 13 C 0.193 3.807 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.040 3.960 23 C 0.119 3.881 24 H 0.219 0.781 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.347 0.653 28 H 0.351 0.649 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.026 0.974 32 H 0.098 0.902 33 H -0.008 1.008 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.378 9.390 -11.971 18.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.191 4.191 3 C -0.083 4.083 4 C -0.035 4.035 5 H 0.126 0.874 6 N -0.356 5.356 7 C 0.309 3.691 8 O -0.415 6.415 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.080 4.080 12 N -0.260 5.260 13 C 0.069 3.931 14 C -0.550 4.550 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.089 4.089 23 C -0.004 4.004 24 H 0.236 0.764 25 H 0.110 0.890 26 H 0.117 0.883 27 H 0.161 0.839 28 H 0.165 0.835 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.116 0.884 33 H 0.009 0.991 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.404 9.015 -12.048 17.744 hybrid contribution -1.190 0.164 0.780 1.432 sum -10.594 9.179 -11.268 17.985 Atomic orbital electron populations 1.24935 0.95900 0.99756 1.00687 1.22811 0.94105 1.01322 1.00892 1.19504 0.85734 0.98343 1.04752 1.21379 0.93083 0.94903 0.94108 0.87365 1.58520 1.16139 1.58366 1.02554 1.20218 0.89557 0.76340 0.82997 1.90659 1.64498 1.50110 1.36218 1.48221 1.07834 1.72183 1.05661 1.22207 0.93983 1.00755 0.84858 1.22417 0.91254 0.94670 0.99653 1.62087 1.02199 1.53267 1.08464 1.19727 0.96320 0.87534 0.89558 1.21090 1.28632 1.12093 0.93145 0.91864 1.24991 0.95312 0.95015 0.99194 1.69950 1.35793 1.16398 1.31512 0.86555 0.79396 0.78025 0.83387 1.20269 1.21349 1.20140 1.22415 0.99454 0.95888 0.91140 1.21775 0.78949 0.99427 1.00226 0.76406 0.88950 0.88253 0.83898 0.83483 0.90327 0.90228 0.95529 0.88429 0.99062 0.94990 0.92785 0.95449 0.90012 0.89361 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.19 -1.79 12.51 -37.12 -0.46 -2.25 16 3 C -0.04 -0.41 5.13 -29.52 -0.15 -0.56 16 4 C 0.08 0.90 2.34 -68.87 -0.16 0.74 16 5 H 0.11 1.20 6.53 -51.93 -0.34 0.86 16 6 N -0.82 -9.02 8.94 -5.66 -0.05 -9.07 16 7 C 0.52 7.56 6.96 -10.99 -0.08 7.49 16 8 O -0.54 -9.41 15.70 5.56 0.09 -9.32 16 9 N -0.61 -8.78 3.00 -172.16 -0.52 -9.29 16 10 C 0.10 1.42 5.75 -3.36 -0.02 1.40 16 11 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 12 N -0.53 -10.89 4.62 -235.44 -1.09 -11.97 16 13 C 0.19 4.87 4.72 -4.98 -0.02 4.84 16 14 C -0.51 -13.74 8.41 -34.44 -0.29 -14.03 16 15 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.04 0.72 5.62 -3.68 -0.02 0.69 16 23 C 0.12 1.81 6.60 -3.59 -0.02 1.78 16 24 H 0.22 1.04 7.80 -54.10 -0.42 0.61 16 25 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.10 0.88 7.23 -51.93 -0.38 0.51 16 27 H 0.35 3.13 8.29 -39.29 -0.33 2.80 16 28 H 0.35 3.76 8.58 -39.29 -0.34 3.42 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 0.88 5.32 -51.93 -0.28 0.60 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 1.83 6.67 -51.93 -0.35 1.49 16 33 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 34 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 38 H 0.09 1.35 7.06 -51.93 -0.37 0.98 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -31.52 322.33 -7.43 -38.96 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.66 Total: 3.89 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -0.78 Total: 1.41 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.92 Total: -55.74 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.52 -7.43 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162840326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.489 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds