Wall clock time and date at job start Mon Mar 30 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.09002 * 109.47196 * 304.99750 * 4 3 2 6 6 N 1.46898 * 109.47386 * 64.99626 * 4 3 2 7 7 C 1.50701 * 109.47011 * 185.00033 * 4 3 2 8 8 O 1.21281 * 119.99748 * 259.99378 * 7 4 3 9 9 N 1.34773 * 120.00269 * 80.00275 * 7 4 3 10 10 C 1.47083 * 120.87820 * 359.71347 * 9 7 4 11 11 C 1.53698 * 108.27217 * 128.75929 * 10 9 7 12 12 N 1.46907 * 109.25748 * 54.08361 * 11 10 9 13 13 C 1.46899 * 110.99873 * 172.60388 * 12 11 10 14 14 C 1.50697 * 109.47415 * 294.30022 * 13 12 11 15 15 H 1.08000 * 119.99646 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00175 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99401 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00086 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47179 * 60.00484 * 18 16 14 20 20 H 1.48505 * 109.47118 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47201 * 300.00202 * 18 16 14 22 22 C 1.46899 * 111.26704 * 296.75761 * 12 11 10 23 23 C 1.47072 * 120.88211 * 180.02562 * 9 7 4 24 24 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 25 25 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 26 26 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 27 27 H 1.00898 * 111.00578 * 296.04915 * 6 4 3 28 28 H 1.00908 * 110.99685 * 60.00149 * 6 4 3 29 29 H 1.08995 * 109.63283 * 248.52664 * 10 9 7 30 30 H 1.09000 * 109.62888 * 9.11054 * 10 9 7 31 31 H 1.09001 * 109.64993 * 294.08024 * 11 10 9 32 32 H 1.09000 * 109.41883 * 173.94731 * 11 10 9 33 33 H 1.08996 * 109.47196 * 54.30382 * 13 12 11 34 34 H 1.09003 * 109.46444 * 174.30319 * 13 12 11 35 35 H 0.97002 * 119.99584 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.49078 * 303.14001 * 22 12 11 37 37 H 1.09004 * 109.51139 * 183.07931 * 22 12 11 38 38 H 1.09001 * 109.63150 * 350.89299 * 23 9 7 39 39 H 1.09003 * 109.63241 * 111.47204 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7223 -2.0991 0.4754 6 7 2.7681 -1.8414 -1.6091 7 6 4.6585 -1.4416 -0.1354 8 8 5.3481 -1.4163 -1.1328 9 7 5.2355 -1.4906 1.0816 10 6 4.4180 -1.5159 2.3040 11 6 4.8901 -2.6908 3.1753 12 7 6.3376 -2.5772 3.3989 13 6 6.8007 -3.5788 4.3686 14 6 6.1980 -3.2872 5.7186 15 1 5.5367 -2.4426 5.8437 16 6 6.4899 -4.0994 6.7939 17 7 7.2948 -5.1282 6.6413 18 14 5.7423 -3.7383 8.4672 19 1 4.2615 -3.7911 8.3695 20 1 6.2105 -4.7508 9.4475 21 1 6.1610 -2.3858 8.9151 22 6 7.0817 -2.6829 2.1367 23 6 6.6993 -1.5134 1.2227 24 1 -1.0498 -0.0004 0.0001 25 1 3.0090 0.6649 -0.7843 26 1 3.0092 0.3479 0.9672 27 1 1.7645 -1.8963 -1.6965 28 1 3.1587 -1.2258 -2.3067 29 1 4.5432 -0.5795 2.8477 30 1 3.3692 -1.6521 2.0404 31 1 4.6729 -3.6320 2.6703 32 1 4.3708 -2.6632 4.1332 33 1 6.4933 -4.5717 4.0402 34 1 7.8877 -3.5400 4.4399 35 1 7.5005 -5.6994 7.3979 36 1 6.8339 -3.6242 1.6462 37 1 8.1519 -2.6500 2.3411 38 1 7.1595 -1.6479 0.2438 39 1 7.0392 -0.5767 1.6646 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162840326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:37 Heat of formation + Delta-G solvation = 6.714894 kcal Electronic energy + Delta-G solvation = -20223.742569 eV Core-core repulsion = 17166.934298 eV Total energy + Delta-G solvation = -3056.808270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.44533 -39.13475 -37.09111 -35.98950 -34.39051 -33.50766 -32.21227 -30.22875 -29.53712 -27.48074 -25.54312 -24.61836 -23.55165 -21.80464 -19.95469 -19.19679 -18.63163 -18.47855 -17.18672 -16.75207 -16.45537 -16.05892 -16.00605 -15.68402 -15.37080 -15.26851 -14.91368 -14.85577 -14.24148 -14.06643 -13.94866 -13.50336 -13.11112 -12.99956 -12.77754 -12.55614 -12.38381 -12.28836 -12.13399 -11.77096 -11.44831 -11.29559 -11.13462 -10.85137 -10.59915 -9.83049 -9.73821 -9.06917 -8.19009 -6.29616 1.42613 1.44641 1.47603 1.55267 1.76773 1.88872 1.99501 2.42201 3.13160 3.18779 3.24840 3.51286 3.73132 3.88327 3.95666 4.00276 4.04357 4.22508 4.26905 4.43000 4.52848 4.59740 4.71572 4.74369 4.84487 4.93911 5.01176 5.13513 5.19430 5.22904 5.41830 5.64615 5.96726 6.02929 6.22511 6.39755 6.44510 6.55697 6.67083 6.86158 7.06952 7.40557 8.92286 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.023812 B = 0.004488 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.580598 B = 6237.853982 C = 7105.451090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.225 4.225 3 C -0.035 4.035 4 C 0.089 3.911 5 H 0.113 0.887 6 N -0.834 5.834 7 C 0.521 3.479 8 O -0.570 6.570 9 N -0.608 5.608 10 C 0.117 3.883 11 C 0.047 3.953 12 N -0.536 5.536 13 C 0.207 3.793 14 C -0.522 4.522 15 H 0.071 0.929 16 C 0.001 3.999 17 N -0.937 5.937 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.267 1.267 22 C 0.042 3.958 23 C 0.127 3.873 24 H 0.247 0.753 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.358 0.642 28 H 0.351 0.649 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.013 0.987 32 H 0.088 0.912 33 H -0.042 1.042 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.012 0.988 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.658 11.126 -11.725 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.226 4.226 3 C -0.074 4.074 4 C -0.026 4.026 5 H 0.131 0.869 6 N -0.367 5.367 7 C 0.309 3.691 8 O -0.449 6.449 9 N -0.341 5.341 10 C -0.005 4.005 11 C -0.082 4.082 12 N -0.260 5.260 13 C 0.081 3.919 14 C -0.560 4.560 15 H 0.089 0.911 16 C -0.197 4.197 17 N -0.578 5.578 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.192 1.192 22 C -0.087 4.087 23 C 0.005 3.995 24 H 0.263 0.737 25 H 0.112 0.888 26 H 0.124 0.876 27 H 0.174 0.826 28 H 0.166 0.834 29 H 0.112 0.888 30 H 0.130 0.870 31 H 0.031 0.969 32 H 0.106 0.894 33 H -0.025 1.025 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.716 10.773 -11.816 19.822 hybrid contribution -0.488 -0.410 0.628 0.894 sum -12.203 10.363 -11.188 19.532 Atomic orbital electron populations 1.25707 0.96707 0.98019 0.99181 1.22926 0.94436 1.02873 1.02325 1.19346 0.86139 0.96746 1.05152 1.21288 0.90424 0.96451 0.94458 0.86897 1.58503 1.17106 1.58622 1.02466 1.20803 0.90901 0.75144 0.82228 1.90645 1.65590 1.51508 1.37173 1.48286 1.07522 1.72056 1.06209 1.22199 0.95240 0.99277 0.83779 1.22479 0.89410 0.96201 1.00063 1.62024 1.04024 1.51007 1.08986 1.19385 0.94591 0.87157 0.90766 1.21429 1.28540 1.12188 0.93824 0.91052 1.25941 0.95644 0.94666 1.03454 1.70097 1.37354 1.17592 1.32746 0.85412 0.79014 0.77968 0.78085 1.18880 1.21378 1.19191 1.22452 0.99343 0.96552 0.90337 1.21631 0.79878 0.98562 0.99461 0.73691 0.88816 0.87637 0.82608 0.83426 0.88761 0.87044 0.96875 0.89372 1.02453 0.97726 0.92764 0.96978 0.90005 0.89291 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 19.25 74.32 1.43 -0.88 16 2 C -0.23 -3.59 12.51 31.13 0.39 -3.20 16 3 C -0.03 -0.57 5.13 28.79 0.15 -0.42 16 4 C 0.09 1.82 2.34 44.17 0.10 1.92 16 5 H 0.11 2.21 6.53 -2.39 -0.02 2.19 16 6 N -0.83 -16.94 8.94 -171.81 -1.54 -18.47 16 7 C 0.52 14.34 6.96 87.66 0.61 14.95 16 8 O -0.57 -19.48 15.70 -3.03 -0.05 -19.53 16 9 N -0.61 -16.70 3.00 -816.98 -2.45 -19.16 16 10 C 0.12 2.93 5.75 86.50 0.50 3.42 16 11 C 0.05 1.66 5.47 86.54 0.47 2.14 16 12 N -0.54 -22.04 4.62 -898.78 -4.15 -26.19 16 13 C 0.21 10.82 4.72 85.56 0.40 11.22 16 14 C -0.52 -28.32 8.41 25.60 0.22 -28.11 16 15 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 16 C 0.00 0.05 5.46 84.65 0.46 0.51 16 17 N -0.94 -55.83 13.29 21.45 0.28 -55.55 16 18 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 C 0.04 1.52 5.62 86.40 0.49 2.01 16 23 C 0.13 3.78 6.60 86.36 0.57 4.35 16 24 H 0.25 1.37 7.80 -4.43 -0.03 1.34 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.11 1.56 7.23 -2.39 -0.02 1.54 16 27 H 0.36 5.77 8.29 -89.70 -0.74 5.02 16 28 H 0.35 7.11 8.58 -89.69 -0.77 6.34 16 29 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.11 2.11 5.32 -2.39 -0.01 2.09 16 31 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 3.26 6.67 -2.39 -0.02 3.24 16 33 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 34 H 0.00 0.26 7.97 -2.39 -0.02 0.24 16 35 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.08 2.90 7.99 -2.38 -0.02 2.88 16 38 H 0.09 2.67 7.06 -2.39 -0.02 2.65 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -68.81 322.33 -0.54 -69.35 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -0.45 Total: 16.88 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.79 Total: 7.91 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -7.86 Total: -119.37 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.05 Total: -19.53 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -68.81 -0.54 -69.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162840326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.067 kcal (2) G-P(sol) polarization free energy of solvation -68.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds