Wall clock time and date at job start Mon Mar 30 2020 04:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50692 * 109.47610 * 2 1 4 4 N 1.30471 * 119.14624 * 0.02562 * 3 2 1 5 5 C 1.34226 * 121.28766 * 180.02562 * 4 3 2 6 6 N 1.37986 * 120.22991 * 179.97438 * 5 4 3 7 7 C 1.46494 * 120.00223 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47665 * 90.00073 * 7 6 5 9 9 H 1.08003 * 119.99555 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00306 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99924 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00128 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47053 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47247 * 119.99902 * 12 10 8 15 15 H 1.48496 * 109.47429 * 240.00042 * 12 10 8 16 16 C 1.46506 * 119.99782 * 0.02562 * 6 5 4 17 17 C 1.53004 * 109.46699 * 120.00110 * 16 6 5 18 18 C 1.53002 * 109.47118 * 240.00085 * 16 6 5 19 19 C 1.38503 * 119.54216 * 359.97438 * 5 4 3 20 20 C 1.40171 * 118.42900 * 0.28010 * 19 5 4 21 21 O 1.22083 * 120.63034 * 179.70329 * 20 19 5 22 22 N 1.34793 * 119.15401 * 180.02562 * 3 2 1 23 23 H 0.97004 * 119.84771 * 0.02562 * 22 3 2 24 24 H 1.09006 * 109.47256 * 300.00242 * 1 2 3 25 25 H 1.09001 * 109.47228 * 60.00257 * 1 2 3 26 26 H 1.09002 * 109.47532 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47256 * 239.99758 * 2 1 3 28 28 H 1.09004 * 109.46981 * 120.00200 * 2 1 3 29 29 H 1.09005 * 109.47365 * 209.99937 * 7 6 5 30 30 H 1.09002 * 109.47136 * 329.99334 * 7 6 5 31 31 H 0.97003 * 119.99905 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.46901 * 0.02562 * 16 6 5 33 33 H 1.09004 * 109.47126 * 60.00390 * 17 16 6 34 34 H 1.09007 * 109.46800 * 179.97438 * 17 16 6 35 35 H 1.09001 * 109.47302 * 300.00018 * 17 16 6 36 36 H 1.08996 * 109.46924 * 60.00267 * 18 16 6 37 37 H 1.08999 * 109.46593 * 180.02562 * 18 16 6 38 38 H 1.09004 * 109.47003 * 299.99797 * 18 16 6 39 39 H 1.08002 * 120.78180 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.1699 2.3997 0.0005 5 6 1.5698 3.6810 0.0000 6 7 0.6388 4.6994 0.0000 7 6 1.0808 6.0961 -0.0011 8 6 1.2315 6.5743 -1.4222 9 1 1.0195 5.9046 -2.2426 10 6 1.6408 7.8663 -1.6751 11 7 1.9003 8.6813 -0.6761 12 14 1.8283 8.4588 -3.4367 13 1 1.4784 7.3574 -4.3693 14 1 0.9215 9.6114 -3.6704 15 1 3.2332 8.8789 -3.6709 16 6 -0.7919 4.3839 0.0012 17 6 -1.4444 4.9791 1.2505 18 6 -1.4461 4.9776 -1.2480 19 6 2.9236 3.9739 -0.0005 20 6 3.8364 2.9102 -0.0065 21 8 5.0387 3.1223 -0.0127 22 7 3.3611 1.6473 -0.0005 23 1 3.9785 0.8991 -0.0013 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.3423 6.7114 0.5129 30 1 2.0392 6.1742 0.5122 31 1 2.1880 9.5905 -0.8540 32 1 -0.9253 3.3021 0.0023 33 1 -1.3109 6.0610 1.2498 34 1 -2.5090 4.7448 1.2512 35 1 -0.9783 4.5562 2.1405 36 1 -0.9812 4.5535 -2.1380 37 1 -2.5106 4.7432 -1.2469 38 1 -1.3126 6.0594 -1.2487 39 1 3.2676 4.9976 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163423557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:09 Heat of formation + Delta-G solvation = -3.012948 kcal Electronic energy + Delta-G solvation = -20864.587801 eV Core-core repulsion = 17807.357699 eV Total energy + Delta-G solvation = -3057.230101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07921 -37.90135 -36.91091 -33.89687 -33.14474 -32.93023 -31.07702 -28.70583 -27.35677 -26.66161 -25.03273 -23.44117 -22.33953 -21.18309 -19.55745 -18.22601 -17.29097 -16.69337 -16.38421 -15.75950 -14.81417 -14.66167 -14.29131 -14.20874 -13.68126 -13.43323 -13.28997 -12.72895 -12.41242 -12.32348 -12.22223 -11.70140 -11.66801 -11.55065 -11.44239 -11.28141 -11.03703 -10.84142 -10.69404 -10.46395 -10.29012 -10.01239 -9.56918 -9.48482 -9.38335 -8.49791 -8.28457 -6.84496 -6.09347 -4.16451 1.36705 2.61993 3.15057 3.27016 3.35785 3.38917 3.64228 4.21440 4.34808 4.41499 4.84715 4.99746 5.16116 5.23171 5.40214 5.46588 5.64538 5.66182 5.73426 5.81793 5.89674 6.07481 6.18638 6.27474 6.28737 6.35030 6.40648 6.59072 6.67531 6.80927 7.01795 7.10795 7.20980 7.44825 7.68706 7.86428 8.11902 8.25927 8.48218 8.66594 8.90274 9.49126 10.95946 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.007072 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.544187 B = 3958.237599 C = 4870.448539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C 0.406 3.594 4 N -0.557 5.557 5 C 0.447 3.553 6 N -0.558 5.558 7 C 0.246 3.754 8 C -0.526 4.526 9 H 0.062 0.938 10 C 0.063 3.937 11 N -0.893 5.893 12 Si 0.896 3.104 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.282 1.282 16 C 0.140 3.860 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.399 4.399 20 C 0.531 3.469 21 O -0.575 6.575 22 N -0.646 5.646 23 H 0.405 0.595 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.665 -16.184 2.468 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C 0.136 3.864 4 N -0.285 5.285 5 C 0.220 3.780 6 N -0.260 5.260 7 C 0.127 3.873 8 C -0.565 4.565 9 H 0.080 0.920 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.208 1.208 16 C 0.036 3.964 17 C -0.218 4.218 18 C -0.213 4.213 19 C -0.431 4.431 20 C 0.337 3.663 21 O -0.458 6.458 22 N -0.287 5.287 23 H 0.242 0.758 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.998 -15.393 2.514 17.095 hybrid contribution 1.256 0.470 -1.028 1.690 sum -5.742 -14.923 1.486 16.059 Atomic orbital electron populations 1.21502 0.92304 1.01093 1.04124 1.20698 0.99136 0.87827 1.03930 1.22577 0.79816 0.96588 0.87403 1.67650 1.34795 0.98888 1.27202 1.18428 0.88460 0.85241 0.85837 1.47167 1.03229 1.05663 1.69979 1.19489 0.96435 0.73612 0.97799 1.21480 1.45923 0.96977 0.92089 0.92007 1.24924 0.95031 0.96613 0.97371 1.69929 1.45748 1.06763 1.30702 0.86470 0.77905 0.78625 0.84649 1.19773 1.20966 1.20814 1.20982 0.80310 1.00242 0.94842 1.22161 0.99687 1.02365 0.97625 1.22132 0.98235 1.03638 0.97304 1.22027 0.90326 1.00817 1.29926 1.16776 0.89597 0.81370 0.78544 1.90909 1.15823 1.83144 1.55953 1.44642 1.07978 1.11869 1.64211 0.75798 0.91547 0.91483 0.92527 0.88764 0.88782 0.94064 0.94053 0.92636 0.88999 0.91693 0.92294 0.93041 0.92879 0.93312 0.90425 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.11 37.15 0.34 -0.73 16 2 C -0.08 -0.60 6.38 -27.89 -0.18 -0.78 16 3 C 0.41 5.39 7.62 -155.67 -1.19 4.21 16 4 N -0.56 -9.15 7.48 -9.71 -0.07 -9.22 16 5 C 0.45 9.11 7.38 -154.65 -1.14 7.97 16 6 N -0.56 -11.56 2.47 -167.62 -0.41 -11.97 16 7 C 0.25 6.01 4.33 -5.20 -0.02 5.99 16 8 C -0.53 -14.03 7.83 -34.44 -0.27 -14.30 16 9 H 0.06 1.69 7.63 -52.48 -0.40 1.29 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 12 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.14 2.41 3.28 -67.92 -0.22 2.19 16 17 C -0.16 -2.46 9.17 37.16 0.34 -2.12 16 18 C -0.16 -2.66 8.47 37.16 0.31 -2.35 16 19 C -0.40 -9.00 9.21 -38.76 -0.36 -9.36 16 20 C 0.53 11.06 7.72 -15.46 -0.12 10.94 16 21 O -0.57 -13.91 17.97 4.84 0.09 -13.82 16 22 N -0.65 -9.52 5.23 -12.52 -0.07 -9.59 16 23 H 0.41 4.50 8.77 -40.82 -0.36 4.14 16 24 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 25 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 1.04 6.43 -51.93 -0.33 0.70 16 30 H 0.04 1.11 6.18 -51.93 -0.32 0.79 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.09 1.47 6.81 -51.93 -0.35 1.12 16 33 H 0.06 1.10 6.66 -51.93 -0.35 0.76 16 34 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 39 H 0.16 4.02 6.18 -52.49 -0.32 3.70 16 LS Contribution 320.22 15.07 4.83 4.83 Total: -1.00 -32.86 320.22 -8.25 -41.11 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.73 Total: 3.71 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.60 Total: 3.30 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.18 Total: -55.63 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.86 -8.25 -41.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163423557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.093 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds