Wall clock time and date at job start Mon Mar 30 2020 04:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50692 * 109.47610 * 2 1 4 4 N 1.30471 * 119.14624 * 0.02562 * 3 2 1 5 5 C 1.34226 * 121.28766 * 180.02562 * 4 3 2 6 6 N 1.37986 * 120.22991 * 179.97438 * 5 4 3 7 7 C 1.46494 * 120.00223 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47665 * 90.00073 * 7 6 5 9 9 H 1.08003 * 119.99555 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00306 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99924 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00128 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.47053 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.47247 * 119.99902 * 12 10 8 15 15 H 1.48496 * 109.47429 * 240.00042 * 12 10 8 16 16 C 1.46506 * 119.99782 * 0.02562 * 6 5 4 17 17 C 1.53004 * 109.46699 * 120.00110 * 16 6 5 18 18 C 1.53002 * 109.47118 * 240.00085 * 16 6 5 19 19 C 1.38503 * 119.54216 * 359.97438 * 5 4 3 20 20 C 1.40171 * 118.42900 * 0.28010 * 19 5 4 21 21 O 1.22083 * 120.63034 * 179.70329 * 20 19 5 22 22 N 1.34793 * 119.15401 * 180.02562 * 3 2 1 23 23 H 0.97004 * 119.84771 * 0.02562 * 22 3 2 24 24 H 1.09006 * 109.47256 * 300.00242 * 1 2 3 25 25 H 1.09001 * 109.47228 * 60.00257 * 1 2 3 26 26 H 1.09002 * 109.47532 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47256 * 239.99758 * 2 1 3 28 28 H 1.09004 * 109.46981 * 120.00200 * 2 1 3 29 29 H 1.09005 * 109.47365 * 209.99937 * 7 6 5 30 30 H 1.09002 * 109.47136 * 329.99334 * 7 6 5 31 31 H 0.97003 * 119.99905 * 180.02562 * 11 10 8 32 32 H 1.08994 * 109.46901 * 0.02562 * 16 6 5 33 33 H 1.09004 * 109.47126 * 60.00390 * 17 16 6 34 34 H 1.09007 * 109.46800 * 179.97438 * 17 16 6 35 35 H 1.09001 * 109.47302 * 300.00018 * 17 16 6 36 36 H 1.08996 * 109.46924 * 60.00267 * 18 16 6 37 37 H 1.08999 * 109.46593 * 180.02562 * 18 16 6 38 38 H 1.09004 * 109.47003 * 299.99797 * 18 16 6 39 39 H 1.08002 * 120.78180 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 1.1699 2.3997 0.0005 5 6 1.5698 3.6810 0.0000 6 7 0.6388 4.6994 0.0000 7 6 1.0808 6.0961 -0.0011 8 6 1.2315 6.5743 -1.4222 9 1 1.0195 5.9046 -2.2426 10 6 1.6408 7.8663 -1.6751 11 7 1.9003 8.6813 -0.6761 12 14 1.8283 8.4588 -3.4367 13 1 1.4784 7.3574 -4.3693 14 1 0.9215 9.6114 -3.6704 15 1 3.2332 8.8789 -3.6709 16 6 -0.7919 4.3839 0.0012 17 6 -1.4444 4.9791 1.2505 18 6 -1.4461 4.9776 -1.2480 19 6 2.9236 3.9739 -0.0005 20 6 3.8364 2.9102 -0.0065 21 8 5.0387 3.1223 -0.0127 22 7 3.3611 1.6473 -0.0005 23 1 3.9785 0.8991 -0.0013 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.3423 6.7114 0.5129 30 1 2.0392 6.1742 0.5122 31 1 2.1880 9.5905 -0.8540 32 1 -0.9253 3.3021 0.0023 33 1 -1.3109 6.0610 1.2498 34 1 -2.5090 4.7448 1.2512 35 1 -0.9783 4.5562 2.1405 36 1 -0.9812 4.5535 -2.1380 37 1 -2.5106 4.7432 -1.2469 38 1 -1.3126 6.0594 -1.2487 39 1 3.2676 4.9976 -0.0013 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163423557.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:08 Heat of formation + Delta-G solvation = -24.153961 kcal Electronic energy + Delta-G solvation = -20865.504544 eV Core-core repulsion = 17807.357699 eV Total energy + Delta-G solvation = -3058.146844 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.51940 -39.52412 -38.41739 -35.23495 -34.95724 -34.24799 -32.58689 -30.21452 -29.26385 -28.00442 -26.17622 -25.20049 -23.91958 -22.29312 -21.07771 -19.60541 -18.78685 -18.66781 -18.12630 -17.01760 -16.63225 -16.15712 -15.73995 -15.26785 -15.22317 -15.04740 -14.75904 -14.37182 -14.09489 -13.56702 -13.28095 -13.20912 -13.05030 -12.97191 -12.83211 -12.62755 -12.53167 -12.33714 -12.16463 -11.99438 -11.68883 -11.61250 -11.49036 -11.15173 -10.89266 -10.63331 -9.85997 -8.64339 -8.17918 -6.36026 0.01430 1.06634 1.33300 1.36647 1.46807 1.87113 2.06391 2.37122 2.82743 3.05387 3.10695 3.87264 3.98725 4.11669 4.29839 4.41517 4.44278 4.45049 4.68330 4.77884 4.84123 4.85548 4.90885 4.98682 5.04591 5.09614 5.12255 5.20386 5.29116 5.42013 5.53484 5.57691 5.66051 5.68507 5.89805 6.01027 6.12947 6.60694 6.72416 7.01420 7.10235 7.33552 8.82835 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.007072 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.544187 B = 3958.237599 C = 4870.448539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C 0.427 3.573 4 N -0.564 5.564 5 C 0.461 3.539 6 N -0.562 5.562 7 C 0.265 3.735 8 C -0.527 4.527 9 H 0.053 0.947 10 C 0.013 3.987 11 N -0.926 5.926 12 Si 0.957 3.043 13 H -0.269 1.269 14 H -0.270 1.270 15 H -0.285 1.285 16 C 0.135 3.865 17 C -0.153 4.153 18 C -0.147 4.147 19 C -0.451 4.451 20 C 0.534 3.466 21 O -0.619 6.619 22 N -0.628 5.628 23 H 0.429 0.571 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.129 0.871 28 H 0.133 0.867 29 H 0.032 0.968 30 H 0.006 0.994 31 H 0.266 0.734 32 H 0.114 0.886 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.581 -19.651 1.902 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C 0.160 3.840 4 N -0.294 5.294 5 C 0.232 3.768 6 N -0.265 5.265 7 C 0.144 3.856 8 C -0.565 4.565 9 H 0.071 0.929 10 C -0.187 4.187 11 N -0.566 5.566 12 Si 0.782 3.218 13 H -0.193 1.193 14 H -0.195 1.195 15 H -0.211 1.211 16 C 0.033 3.967 17 C -0.211 4.211 18 C -0.205 4.205 19 C -0.483 4.483 20 C 0.340 3.660 21 O -0.506 6.506 22 N -0.269 5.269 23 H 0.270 0.730 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.050 0.950 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.940 -18.938 1.949 21.033 hybrid contribution 1.780 1.397 -0.814 2.405 sum -7.160 -17.541 1.135 18.980 Atomic orbital electron populations 1.21521 0.92202 1.02662 1.02695 1.21096 0.99031 0.83562 1.07274 1.23970 0.78638 0.98558 0.82858 1.67828 1.35022 0.97123 1.29398 1.18505 0.87369 0.86969 0.83971 1.47141 1.05051 1.04441 1.69840 1.18949 0.94432 0.75938 0.96288 1.21630 1.45268 0.96916 0.92723 0.92868 1.25711 0.94866 0.96917 1.01162 1.70034 1.46804 1.07134 1.32636 0.85518 0.77723 0.78443 0.80090 1.19343 1.19541 1.21094 1.21315 0.78033 1.01597 0.95783 1.22102 1.01821 1.00545 0.96584 1.22051 1.00626 1.01273 0.96572 1.21725 0.92256 0.99529 1.34784 1.16488 0.88436 0.83009 0.78085 1.90863 1.17359 1.84453 1.57934 1.44221 1.09216 1.10443 1.63030 0.73033 0.92790 0.93161 0.89481 0.85279 0.84958 0.95030 0.97569 0.92474 0.86862 0.94085 0.88592 0.92990 0.94368 0.89335 0.93576 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.11 71.98 0.66 -0.85 16 2 C -0.07 -0.71 6.38 29.84 0.19 -0.52 16 3 C 0.43 10.05 7.62 138.21 1.05 11.10 16 4 N -0.56 -17.61 7.48 -184.64 -1.38 -18.99 16 5 C 0.46 19.20 7.38 132.70 0.98 20.18 16 6 N -0.56 -24.04 2.47 -684.23 -1.69 -25.73 16 7 C 0.27 13.81 4.33 85.63 0.37 14.18 16 8 C -0.53 -29.43 7.83 25.60 0.20 -29.23 16 9 H 0.05 3.01 7.63 -2.91 -0.02 2.98 16 10 C 0.01 0.72 5.46 84.65 0.46 1.18 16 11 N -0.93 -55.38 13.29 21.45 0.28 -55.09 16 12 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 13 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 15 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 16 C 0.14 4.52 3.28 44.99 0.15 4.66 16 17 C -0.15 -4.50 9.17 71.98 0.66 -3.84 16 18 C -0.15 -4.92 8.47 71.98 0.61 -4.31 16 19 C -0.45 -21.66 9.21 22.80 0.21 -21.45 16 20 C 0.53 22.85 7.72 84.69 0.65 23.50 16 21 O -0.62 -31.18 17.97 -5.59 -0.10 -31.28 16 22 N -0.63 -17.34 5.23 -311.50 -1.63 -18.97 16 23 H 0.43 8.18 8.77 -92.71 -0.81 7.37 16 24 H 0.05 0.77 8.04 -2.38 -0.02 0.75 16 25 H 0.05 0.76 8.04 -2.39 -0.02 0.74 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.03 1.70 6.43 -2.38 -0.02 1.68 16 30 H 0.01 0.38 6.18 -2.39 -0.01 0.36 16 31 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 32 H 0.11 3.34 6.81 -2.39 -0.02 3.33 16 33 H 0.04 1.40 6.66 -2.38 -0.02 1.38 16 34 H 0.10 2.11 8.14 -2.38 -0.02 2.10 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.83 6.92 -2.39 -0.02 1.81 16 39 H 0.11 6.13 6.18 -2.91 -0.02 6.12 16 Total: -1.00 -78.52 320.22 3.95 -74.58 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.24 Total: 13.57 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 6.19 Total: 14.61 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -4.42 Total: -118.78 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.10 Total: -31.28 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -78.52 3.95 -74.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163423557.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.424 kcal (2) G-P(sol) polarization free energy of solvation -78.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds