Wall clock time and date at job start Mon Mar 30 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46689 * 2 1 4 4 C 1.50693 * 109.47328 * 120.00171 * 2 1 3 5 5 O 1.21281 * 119.99926 * 92.37920 * 4 2 1 6 6 N 1.34782 * 120.00085 * 272.38095 * 4 2 1 7 7 C 1.46502 * 119.99693 * 5.01587 * 6 4 2 8 8 C 1.50706 * 109.47171 * 93.51589 * 7 6 4 9 9 H 1.07998 * 119.99988 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99722 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00085 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99804 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46894 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47071 * 119.99765 * 12 10 8 15 15 H 1.48502 * 109.46898 * 239.99814 * 12 10 8 16 16 C 1.46494 * 120.00092 * 185.01321 * 6 4 2 17 17 C 1.53002 * 109.47250 * 89.67623 * 16 6 4 18 18 C 1.47195 * 109.47209 * 182.57032 * 17 16 6 19 19 N 6.96638 * 123.59445 * 108.13851 * 2 1 3 20 20 C 1.52996 * 109.47230 * 240.00312 * 2 1 3 21 21 C 1.53943 * 113.73455 * 81.22818 * 20 2 1 22 22 N 1.48298 * 86.06029 * 138.13057 * 21 20 2 23 23 C 1.47958 * 90.75833 * 335.30900 * 22 21 20 24 24 H 1.09001 * 109.46487 * 184.69725 * 1 2 3 25 25 H 1.08996 * 109.47235 * 304.69405 * 1 2 3 26 26 H 1.08997 * 109.47424 * 64.70293 * 1 2 3 27 27 H 1.08999 * 109.46816 * 213.51675 * 7 6 4 28 28 H 1.08994 * 109.47200 * 333.51446 * 7 6 4 29 29 H 0.96996 * 119.99996 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.47190 * 209.68166 * 16 6 4 31 31 H 1.09008 * 109.47539 * 329.67565 * 16 6 4 32 32 H 1.08998 * 109.46892 * 302.56911 * 17 16 6 33 33 H 1.08998 * 109.46858 * 62.57092 * 17 16 6 34 34 H 1.09004 * 112.94000 * 309.66444 * 20 2 1 35 35 H 1.08994 * 113.76038 * 252.50522 * 21 20 2 36 36 H 1.09003 * 113.75819 * 23.86982 * 21 20 2 37 37 H 1.00896 * 111.00474 * 88.19810 * 22 21 20 38 38 H 1.08996 * 113.76416 * 270.36967 * 23 22 21 39 39 H 1.09004 * 113.85948 * 139.01511 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2757 -1.8978 1.1881 6 7 2.2113 -0.0262 2.3778 7 6 1.8144 1.3816 2.4606 8 6 0.4128 1.4771 3.0059 9 1 -0.1284 0.5790 3.2645 10 6 -0.1786 2.7111 3.1747 11 7 0.4806 3.8048 2.8603 12 14 -1.9157 2.8296 3.8513 13 1 -2.4345 1.4652 4.1249 14 1 -1.9039 3.6168 5.1103 15 1 -2.7899 3.5007 2.8559 16 6 2.8026 -0.6903 3.5420 17 6 4.3239 -0.5318 3.5015 18 6 4.9226 -1.2513 4.6376 19 7 5.3846 -1.8065 5.5145 20 6 2.0401 -0.7212 -1.2492 21 6 2.0440 0.1572 -2.5135 22 7 3.3638 -0.4516 -2.8082 23 6 3.5744 -0.7379 -1.3720 24 1 -0.3632 -1.0243 0.0842 25 1 -0.3633 0.5849 0.8449 26 1 -0.3634 0.4391 -0.9291 27 1 2.4986 1.9136 3.1216 28 1 1.8489 1.8278 1.4668 29 1 0.0647 4.6729 2.9794 30 1 2.4143 -0.2379 4.4545 31 1 2.5471 -1.7499 3.5247 32 1 4.7073 -0.9436 2.5680 33 1 4.5808 0.5255 3.5649 34 1 1.5776 -1.6974 -1.3948 35 1 1.2675 -0.1043 -3.2323 36 1 2.0901 1.2261 -2.3055 37 1 3.2586 -1.3054 -3.3355 38 1 4.0671 0.0698 -0.8308 39 1 4.0199 -1.7136 -1.1776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164293311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:30 Heat of formation + Delta-G solvation = 15.909321 kcal Electronic energy + Delta-G solvation = -20632.021514 eV Core-core repulsion = 17575.611944 eV Total energy + Delta-G solvation = -3056.409570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15742 -38.59665 -36.65558 -35.21201 -33.33050 -32.61240 -30.84224 -27.28546 -26.45266 -25.84387 -24.64831 -23.16440 -22.03994 -20.00812 -18.26269 -17.44443 -16.69877 -16.54489 -16.25299 -15.62967 -14.71186 -14.61780 -14.38153 -14.03539 -13.58606 -13.32380 -13.08943 -12.65147 -12.47235 -12.38841 -12.25960 -12.19390 -11.96237 -11.68591 -11.63061 -11.41967 -11.06792 -10.98633 -10.81492 -10.70570 -10.48796 -10.27690 -10.18411 -9.81631 -9.05146 -8.61972 -8.39619 -7.91826 -6.27827 -4.34182 2.83294 2.93514 3.15909 3.24814 3.26525 3.32570 3.65741 4.13766 4.25407 4.33096 4.66187 4.93171 5.05764 5.19949 5.33075 5.38247 5.45860 5.56989 5.64006 5.65282 5.77397 5.84028 5.92489 6.03931 6.06145 6.07867 6.25345 6.31114 6.35263 6.46899 6.64067 6.89199 7.09240 7.35433 7.38091 7.66842 7.69676 7.94822 8.18429 8.69319 8.88333 9.33366 10.78856 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.008324 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.346587 B = 3363.099878 C = 5315.870645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.100 0.900 4 C 0.525 3.475 5 O -0.571 6.571 6 N -0.595 5.595 7 C 0.233 3.767 8 C -0.537 4.537 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.888 5.888 12 Si 0.892 3.108 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.125 3.875 17 C -0.045 4.045 18 C 0.221 3.779 19 N -0.451 5.451 20 C -0.133 4.133 21 C 0.021 3.979 22 N -0.664 5.664 23 C 0.024 3.976 24 H 0.047 0.953 25 H 0.093 0.907 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.332 0.668 38 H 0.094 0.906 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.464 -4.032 -7.393 8.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.118 0.882 4 C 0.314 3.686 5 O -0.451 6.451 6 N -0.325 5.325 7 C 0.114 3.886 8 C -0.575 4.575 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.720 3.280 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.208 1.208 16 C -0.001 4.001 17 C -0.086 4.086 18 C -0.097 4.097 19 N -0.128 5.128 20 C -0.153 4.153 21 C -0.109 4.109 22 N -0.290 5.290 23 C -0.106 4.106 24 H 0.066 0.934 25 H 0.112 0.888 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.112 0.888 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.810 -4.614 -6.324 8.707 hybrid contribution -1.894 -0.206 0.442 1.956 sum 1.916 -4.820 -5.883 7.843 Atomic orbital electron populations 1.21782 0.92478 1.02171 1.03845 1.21268 0.98357 1.00499 0.91615 0.88219 1.20518 0.76639 0.86736 0.84719 1.90589 1.53594 1.15566 1.85389 1.48217 1.59474 1.14647 1.10196 1.19570 0.95749 0.74504 0.98805 1.21472 0.99362 0.92756 1.43935 0.91915 1.24909 0.98052 0.95548 0.95100 1.69910 1.37430 0.97912 1.47355 0.86528 0.84304 0.78355 0.78864 1.19640 1.20856 1.20770 1.21090 0.88802 0.99570 0.90645 1.19780 0.97057 1.00230 0.91554 1.29122 0.93169 0.93214 0.94162 1.81179 1.09818 1.10345 1.11474 1.24075 0.96774 0.99714 0.94750 1.23797 0.91346 1.00327 0.95424 1.65172 1.25979 1.26958 1.10871 1.23617 0.95484 1.01714 0.89741 0.93385 0.88809 0.92615 0.94553 0.93653 0.92480 0.89316 0.90132 0.87510 0.87000 0.88919 0.91177 0.88253 0.85403 0.88781 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.14 37.16 0.34 -1.98 16 2 C -0.10 -1.50 1.74 -91.77 -0.16 -1.66 16 3 H 0.10 1.61 5.90 -51.93 -0.31 1.30 16 4 C 0.53 9.30 6.33 -10.99 -0.07 9.23 16 5 O -0.57 -11.12 15.72 5.56 0.09 -11.03 16 6 N -0.60 -10.54 2.46 -175.06 -0.43 -10.97 16 7 C 0.23 4.74 4.98 -5.19 -0.03 4.72 16 8 C -0.54 -12.45 7.56 -34.44 -0.26 -12.71 16 9 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 10 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -22.57 13.29 55.43 0.74 -21.83 16 12 Si 0.89 19.30 29.54 -169.99 -5.02 14.28 16 13 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.12 1.94 5.41 -4.04 -0.02 1.92 16 17 C -0.04 -0.56 6.03 -29.52 -0.18 -0.74 16 18 C 0.22 3.16 15.43 -20.76 -0.32 2.84 16 19 N -0.45 -7.49 18.54 42.16 0.78 -6.71 16 20 C -0.13 -1.79 2.72 -89.68 -0.24 -2.03 16 21 C 0.02 0.25 8.45 -2.57 -0.02 0.23 16 22 N -0.66 -8.08 8.56 -116.74 -1.00 -9.08 16 23 C 0.02 0.32 7.85 -2.76 -0.02 0.29 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.09 1.76 6.08 -51.93 -0.32 1.44 16 26 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 27 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.05 0.95 5.64 -51.93 -0.29 0.66 16 29 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 30 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.08 1.31 7.37 -51.92 -0.38 0.93 16 32 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 1.21 7.99 -51.93 -0.41 0.80 16 37 H 0.33 3.48 8.89 -39.29 -0.35 3.13 16 38 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -27.16 329.76 -6.78 -33.94 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -5.83 Total: 4.79 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.08 Total: 1.64 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.09 Total: -48.59 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.16 -6.78 -33.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164293311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.853 kcal (2) G-P(sol) polarization free energy of solvation -27.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds