Wall clock time and date at job start Mon Mar 30 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46689 * 2 1 4 4 C 1.50693 * 109.47328 * 120.00171 * 2 1 3 5 5 O 1.21281 * 119.99926 * 92.37920 * 4 2 1 6 6 N 1.34782 * 120.00085 * 272.38095 * 4 2 1 7 7 C 1.46502 * 119.99693 * 5.01587 * 6 4 2 8 8 C 1.50706 * 109.47171 * 93.51589 * 7 6 4 9 9 H 1.07998 * 119.99988 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99722 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00085 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99804 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46894 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47071 * 119.99765 * 12 10 8 15 15 H 1.48502 * 109.46898 * 239.99814 * 12 10 8 16 16 C 1.46494 * 120.00092 * 185.01321 * 6 4 2 17 17 C 1.53002 * 109.47250 * 89.67623 * 16 6 4 18 18 C 1.47195 * 109.47209 * 182.57032 * 17 16 6 19 19 N 6.96638 * 123.59445 * 108.13851 * 2 1 3 20 20 C 1.52996 * 109.47230 * 240.00312 * 2 1 3 21 21 C 1.53943 * 113.73455 * 81.22818 * 20 2 1 22 22 N 1.48298 * 86.06029 * 138.13057 * 21 20 2 23 23 C 1.47958 * 90.75833 * 335.30900 * 22 21 20 24 24 H 1.09001 * 109.46487 * 184.69725 * 1 2 3 25 25 H 1.08996 * 109.47235 * 304.69405 * 1 2 3 26 26 H 1.08997 * 109.47424 * 64.70293 * 1 2 3 27 27 H 1.08999 * 109.46816 * 213.51675 * 7 6 4 28 28 H 1.08994 * 109.47200 * 333.51446 * 7 6 4 29 29 H 0.96996 * 119.99996 * 180.02562 * 11 10 8 30 30 H 1.09004 * 109.47190 * 209.68166 * 16 6 4 31 31 H 1.09008 * 109.47539 * 329.67565 * 16 6 4 32 32 H 1.08998 * 109.46892 * 302.56911 * 17 16 6 33 33 H 1.08998 * 109.46858 * 62.57092 * 17 16 6 34 34 H 1.09004 * 112.94000 * 309.66444 * 20 2 1 35 35 H 1.08994 * 113.76038 * 252.50522 * 21 20 2 36 36 H 1.09003 * 113.75819 * 23.86982 * 21 20 2 37 37 H 1.00896 * 111.00474 * 88.19810 * 22 21 20 38 38 H 1.08996 * 113.76416 * 270.36967 * 23 22 21 39 39 H 1.09004 * 113.85948 * 139.01511 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.2757 -1.8978 1.1881 6 7 2.2113 -0.0262 2.3778 7 6 1.8144 1.3816 2.4606 8 6 0.4128 1.4771 3.0059 9 1 -0.1284 0.5790 3.2645 10 6 -0.1786 2.7111 3.1747 11 7 0.4806 3.8048 2.8603 12 14 -1.9157 2.8296 3.8513 13 1 -2.4345 1.4652 4.1249 14 1 -1.9039 3.6168 5.1103 15 1 -2.7899 3.5007 2.8559 16 6 2.8026 -0.6903 3.5420 17 6 4.3239 -0.5318 3.5015 18 6 4.9226 -1.2513 4.6376 19 7 5.3846 -1.8065 5.5145 20 6 2.0401 -0.7212 -1.2492 21 6 2.0440 0.1572 -2.5135 22 7 3.3638 -0.4516 -2.8082 23 6 3.5744 -0.7379 -1.3720 24 1 -0.3632 -1.0243 0.0842 25 1 -0.3633 0.5849 0.8449 26 1 -0.3634 0.4391 -0.9291 27 1 2.4986 1.9136 3.1216 28 1 1.8489 1.8278 1.4668 29 1 0.0647 4.6729 2.9794 30 1 2.4143 -0.2379 4.4545 31 1 2.5471 -1.7499 3.5247 32 1 4.7073 -0.9436 2.5680 33 1 4.5808 0.5255 3.5649 34 1 1.5776 -1.6974 -1.3948 35 1 1.2675 -0.1043 -3.2323 36 1 2.0901 1.2261 -2.3055 37 1 3.2586 -1.3054 -3.3355 38 1 4.0671 0.0698 -0.8308 39 1 4.0199 -1.7136 -1.1776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164293311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:29 Heat of formation + Delta-G solvation = -1.115994 kcal Electronic energy + Delta-G solvation = -20632.759787 eV Core-core repulsion = 17575.611944 eV Total energy + Delta-G solvation = -3057.147843 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.41067 -39.79403 -37.90312 -36.70453 -34.80743 -34.15730 -32.15211 -28.98632 -27.57542 -26.84696 -25.91058 -24.87607 -23.28227 -21.09030 -19.68353 -18.70310 -18.26357 -18.02743 -17.31561 -17.03679 -16.29924 -15.88755 -15.78642 -15.22783 -14.77337 -14.66253 -14.35545 -14.14166 -13.73411 -13.62915 -13.58523 -13.35367 -13.26545 -13.03665 -12.96677 -12.87740 -12.65952 -12.61003 -12.18514 -11.96980 -11.79806 -11.68536 -11.51614 -11.41933 -10.59989 -10.34014 -9.45959 -9.37518 -8.13310 -6.23132 1.42807 1.49206 1.56120 1.61736 1.77187 1.88064 2.30875 2.48309 3.15572 3.17129 3.19298 3.52316 3.83675 3.97302 4.14582 4.19674 4.34775 4.43089 4.52196 4.54898 4.68486 4.81377 4.86121 4.88583 4.92834 4.99753 5.03959 5.06183 5.10352 5.20452 5.33912 5.41257 5.56688 5.74493 5.90326 6.15861 6.47562 6.53754 6.64260 6.90674 7.38894 7.50234 8.92042 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.011037 B = 0.008324 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.346587 B = 3363.099878 C = 5315.870645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 H 0.095 0.905 4 C 0.523 3.477 5 O -0.588 6.588 6 N -0.596 5.596 7 C 0.247 3.753 8 C -0.534 4.534 9 H 0.050 0.950 10 C 0.030 3.970 11 N -0.914 5.914 12 Si 0.940 3.060 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.279 1.279 16 C 0.121 3.879 17 C -0.030 4.030 18 C 0.244 3.756 19 N -0.490 5.490 20 C -0.130 4.130 21 C 0.028 3.972 22 N -0.666 5.666 23 C 0.025 3.975 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.043 0.957 29 H 0.266 0.734 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.343 0.657 38 H 0.089 0.911 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.440 -4.085 -8.465 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 H 0.113 0.887 4 C 0.313 3.687 5 O -0.469 6.469 6 N -0.325 5.325 7 C 0.127 3.873 8 C -0.572 4.572 9 H 0.069 0.931 10 C -0.171 4.171 11 N -0.554 5.554 12 Si 0.767 3.233 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.205 1.205 16 C -0.004 4.004 17 C -0.071 4.071 18 C -0.073 4.073 19 N -0.168 5.168 20 C -0.150 4.150 21 C -0.101 4.101 22 N -0.294 5.294 23 C -0.105 4.105 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.158 0.842 38 H 0.107 0.893 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.788 -4.682 -7.397 9.539 hybrid contribution -1.905 -0.234 0.763 2.065 sum 1.883 -4.916 -6.633 8.468 Atomic orbital electron populations 1.21700 0.92647 1.01625 1.03731 1.21272 0.98075 1.00284 0.91760 0.88666 1.20880 0.76123 0.86561 0.85144 1.90580 1.54377 1.16271 1.85708 1.48153 1.59639 1.13795 1.10961 1.19252 0.94174 0.75751 0.98149 1.21635 1.00484 0.92081 1.43046 0.93146 1.25424 1.00519 0.95532 0.95643 1.69972 1.38533 0.98171 1.48713 0.85782 0.81442 0.77913 0.78173 1.19881 1.21066 1.20519 1.21140 0.90680 0.98784 0.89762 1.19709 0.94661 1.01286 0.91419 1.29258 0.92183 0.92200 0.93621 1.81207 1.11139 1.11734 1.12744 1.24075 0.96971 0.99697 0.94290 1.23793 0.91736 0.99835 0.94767 1.65150 1.26230 1.27690 1.10280 1.23569 0.95028 1.01485 0.90388 0.93571 0.91751 0.90325 0.95128 0.93950 0.92517 0.89751 0.90900 0.86154 0.85048 0.89214 0.89162 0.88551 0.84200 0.89257 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 9.14 71.98 0.66 -3.64 16 2 C -0.09 -2.78 1.74 -11.54 -0.02 -2.80 16 3 H 0.10 2.98 5.90 -2.38 -0.01 2.97 16 4 C 0.52 18.07 6.33 87.65 0.55 18.62 16 5 O -0.59 -22.30 15.72 -3.03 -0.05 -22.35 16 6 N -0.60 -20.66 2.46 -826.14 -2.03 -22.69 16 7 C 0.25 9.93 4.98 85.63 0.43 10.36 16 8 C -0.53 -24.63 7.56 25.60 0.19 -24.44 16 9 H 0.05 2.42 7.81 -2.91 -0.02 2.40 16 10 C 0.03 1.42 5.46 84.65 0.46 1.88 16 11 N -0.91 -46.14 13.29 21.45 0.28 -45.86 16 12 Si 0.94 39.32 29.54 68.60 2.03 41.35 16 13 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 16 C 0.12 3.67 5.41 86.38 0.47 4.14 16 17 C -0.03 -0.70 6.03 28.79 0.17 -0.52 16 18 C 0.24 6.68 15.43 89.44 1.38 8.06 16 19 N -0.49 -15.94 18.54 20.01 0.37 -15.57 16 20 C -0.13 -3.27 2.72 -10.15 -0.03 -3.30 16 21 C 0.03 0.60 8.45 86.35 0.73 1.33 16 22 N -0.67 -14.71 8.56 -523.27 -4.48 -19.19 16 23 C 0.03 0.62 7.85 86.41 0.68 1.29 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 2.38 6.08 -2.39 -0.01 2.37 16 26 H 0.08 2.03 8.12 -2.39 -0.02 2.01 16 27 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 28 H 0.04 1.76 5.64 -2.39 -0.01 1.74 16 29 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 30 H 0.08 2.61 8.07 -2.39 -0.02 2.60 16 31 H 0.07 2.33 7.37 -2.38 -0.02 2.31 16 32 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.32 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 2.14 7.99 -2.39 -0.02 2.12 16 37 H 0.34 6.35 8.89 -89.70 -0.80 5.56 16 38 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -56.26 329.76 2.06 -54.21 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.26 Total: 19.13 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.68 Total: 10.98 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.85 Total: -103.31 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -56.26 2.06 -54.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164293311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.089 kcal (2) G-P(sol) polarization free energy of solvation -56.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds