Wall clock time and date at job start Mon Mar 30 2020 04:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00167 * 2 1 4 4 C 1.53003 * 109.47101 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47084 * 65.00061 * 4 3 2 6 6 C 1.46500 * 119.99791 * 269.99704 * 5 4 3 7 7 C 1.50695 * 109.47320 * 270.00214 * 6 5 4 8 8 H 1.08003 * 119.99905 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31506 * 119.99857 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47067 * 90.00041 * 11 9 7 13 13 H 1.48502 * 109.46898 * 209.99627 * 11 9 7 14 14 H 1.48499 * 109.47300 * 329.99649 * 11 9 7 15 15 C 1.38993 * 119.99898 * 89.99927 * 5 4 3 16 16 C 1.39342 * 120.09370 * 184.97560 * 15 5 4 17 17 N 1.31915 * 119.88952 * 180.02562 * 16 15 5 18 18 C 1.32276 * 120.08948 * 359.73288 * 17 16 15 19 19 C 1.50701 * 119.90656 * 180.25531 * 18 17 16 20 20 C 1.38157 * 120.18905 * 0.52698 * 18 17 16 21 21 C 1.50706 * 119.94473 * 179.75496 * 20 18 17 22 22 N 1.32252 * 120.11237 * 359.47337 * 20 18 17 23 23 H 1.09007 * 109.46686 * 299.99874 * 1 2 3 24 24 H 1.08997 * 109.47121 * 59.99617 * 1 2 3 25 25 H 1.08990 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47027 * 60.00485 * 3 2 1 27 27 H 1.08996 * 109.47125 * 300.00020 * 3 2 1 28 28 H 1.08996 * 109.46891 * 304.99886 * 4 3 2 29 29 H 1.09005 * 109.46695 * 184.99806 * 4 3 2 30 30 H 1.09000 * 109.46807 * 30.00483 * 6 5 4 31 31 H 1.09001 * 109.46707 * 150.00123 * 6 5 4 32 32 H 0.97007 * 120.00024 * 180.02562 * 10 9 7 33 33 H 1.07995 * 120.05424 * 0.04377 * 16 15 5 34 34 H 1.08999 * 109.46895 * 270.26892 * 19 18 17 35 35 H 1.08997 * 109.47210 * 30.26565 * 19 18 17 36 36 H 1.08995 * 109.47263 * 150.27013 * 19 18 17 37 37 H 1.09001 * 109.46953 * 269.71798 * 21 20 18 38 38 H 1.09000 * 109.47318 * 29.71396 * 21 20 18 39 39 H 1.09000 * 109.47161 * 149.72027 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2979 -0.9449 8 1 6.2198 -0.5460 -0.6545 9 6 5.8606 -2.6289 -0.9527 10 7 4.9854 -3.5444 -1.3067 11 14 7.5909 -3.1317 -0.4602 12 1 7.6355 -3.3845 1.0024 13 1 7.9731 -4.3684 -1.1881 14 1 8.5397 -2.0421 -0.8034 15 6 4.2705 1.3578 -2.3553 16 6 4.5888 0.7667 -3.5763 17 7 4.8684 1.5236 -4.6199 18 6 4.8416 2.8415 -4.5096 19 6 5.1561 3.7022 -5.7060 20 6 4.5316 3.4312 -3.2993 21 6 4.5081 4.9332 -3.1784 22 7 4.2501 2.6798 -2.2479 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8514 0.5682 0.8409 29 1 3.9786 2.1765 0.0889 30 1 3.3852 -1.3629 -0.6734 31 1 3.9120 -1.2114 -2.3669 32 1 5.2383 -4.4809 -1.3119 33 1 4.6064 -0.3091 -3.6682 34 1 6.2267 3.9042 -5.7369 35 1 4.8581 3.1820 -6.6163 36 1 4.6109 4.6430 -5.6301 37 1 5.4961 5.2897 -2.8870 38 1 4.2324 5.3707 -4.1379 39 1 3.7790 5.2255 -2.4227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164604861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:51 Heat of formation + Delta-G solvation = 4.395430 kcal Electronic energy + Delta-G solvation = -20485.941313 eV Core-core repulsion = 17429.032463 eV Total energy + Delta-G solvation = -3056.908850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.48345 -37.84047 -36.20720 -33.84122 -33.02840 -32.34682 -29.86953 -28.53732 -27.13765 -26.36753 -25.24257 -23.26017 -22.63622 -21.88253 -20.00705 -17.29387 -16.75326 -16.43324 -15.73207 -15.63787 -15.03032 -14.86743 -14.66806 -14.31211 -13.69038 -13.46486 -12.93988 -12.77692 -12.69930 -12.25154 -12.22301 -12.02993 -11.84513 -11.53423 -11.37985 -11.24384 -10.94688 -10.89416 -10.68971 -10.46912 -10.38789 -10.11092 -9.75257 -9.37746 -8.87019 -8.52694 -8.34360 -6.77168 -6.07064 -4.17359 1.62341 1.98591 3.27519 3.34300 3.38124 3.70595 4.14212 4.36571 4.43372 4.74074 4.87435 5.15760 5.23100 5.28326 5.37790 5.46251 5.57492 5.60654 5.64038 5.66948 5.69858 5.81761 5.84898 5.86412 5.96295 6.00246 6.10212 6.16978 6.38391 6.46610 6.87793 7.13573 7.36056 7.48715 7.62855 7.86952 8.14032 8.15356 8.36386 8.65031 8.91424 9.49122 10.96135 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.007394 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.472125 B = 3785.927793 C = 5266.009457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.049 3.951 4 C 0.130 3.870 5 N -0.566 5.566 6 C 0.252 3.748 7 C -0.538 4.538 8 H 0.058 0.942 9 C 0.065 3.935 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.372 3.628 16 C 0.002 3.998 17 N -0.407 5.407 18 C -0.030 4.030 19 C -0.083 4.083 20 C 0.125 3.875 21 C -0.098 4.098 22 N -0.524 5.524 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.265 0.735 33 H 0.173 0.827 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 13.125 -1.341 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.293 6.293 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.274 5.274 6 C 0.133 3.867 7 C -0.577 4.577 8 H 0.077 0.923 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.131 3.869 16 C -0.169 4.169 17 N -0.120 5.120 18 C -0.170 4.170 19 C -0.140 4.140 20 C -0.017 4.017 21 C -0.156 4.156 22 N -0.249 5.249 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.189 0.811 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.375 12.612 -1.198 13.762 hybrid contribution 0.725 -0.295 0.423 0.890 sum -4.650 12.317 -0.776 13.188 Atomic orbital electron populations 1.22674 0.82222 1.02410 0.99060 1.88066 1.18619 1.27469 1.95169 1.23065 0.95544 0.84876 0.99432 1.21350 0.90798 0.99552 0.87780 1.47125 1.65394 1.07421 1.07459 1.19505 0.97272 0.71301 0.98632 1.21538 0.97301 0.92382 1.46441 0.92335 1.24915 0.97515 0.96304 0.95006 1.69930 1.34363 1.01174 1.47364 0.86522 0.84421 0.78103 0.78574 1.20557 1.21029 1.19919 1.19466 0.90344 0.88133 0.88936 1.23309 1.04121 1.01549 0.87952 1.68019 1.08124 1.05150 1.30727 1.21374 1.08166 0.91379 0.96129 1.20444 1.01335 0.97459 0.94810 1.21542 0.94275 0.96699 0.89143 1.20693 1.02937 0.89128 1.02850 1.67751 1.21719 1.04225 1.31171 0.94753 0.94762 0.89847 0.93340 0.93731 0.89667 0.89228 0.92785 0.94784 0.92568 0.81051 0.91685 0.91465 0.91323 0.90619 0.90478 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.79 9.53 -35.23 -0.34 -7.13 16 3 C 0.05 0.80 6.28 37.16 0.23 1.03 16 4 C 0.13 2.39 5.88 -4.04 -0.02 2.36 16 5 N -0.57 -12.25 2.53 -175.07 -0.44 -12.70 16 6 C 0.25 6.29 4.83 -5.20 -0.03 6.26 16 7 C -0.54 -14.62 9.39 -34.44 -0.32 -14.95 16 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 11 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.37 7.92 7.37 -154.73 -1.14 6.78 16 16 C 0.00 0.04 10.43 -17.11 -0.18 -0.14 16 17 N -0.41 -8.26 10.41 -9.11 -0.09 -8.35 16 18 C -0.03 -0.53 6.78 -82.43 -0.56 -1.08 16 19 C -0.08 -1.04 9.78 36.01 0.35 -0.69 16 20 C 0.13 2.10 6.78 -82.44 -0.56 1.54 16 21 C -0.10 -1.15 9.78 36.01 0.35 -0.79 16 22 N -0.52 -10.07 9.18 -8.48 -0.08 -10.15 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.62 8.07 -51.93 -0.42 1.20 16 29 H 0.09 1.55 7.32 -51.93 -0.38 1.17 16 30 H 0.05 1.44 7.11 -51.93 -0.37 1.07 16 31 H 0.03 0.90 6.00 -51.93 -0.31 0.58 16 32 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 33 H 0.17 3.91 6.04 -52.49 -0.32 3.59 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.67 5.93 -51.93 -0.31 0.36 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.71 5.92 -51.93 -0.31 0.40 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -30.72 325.36 -6.95 -37.67 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.76 Total: 0.47 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.86 Total: 3.60 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.12 Total: -55.88 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.34 Total: -7.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.72 -6.95 -37.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164604861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.066 kcal (2) G-P(sol) polarization free energy of solvation -30.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds