Wall clock time and date at job start Mon Mar 30 2020 04:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00167 * 2 1 4 4 C 1.53003 * 109.47101 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47084 * 65.00061 * 4 3 2 6 6 C 1.46500 * 119.99791 * 269.99704 * 5 4 3 7 7 C 1.50695 * 109.47320 * 270.00214 * 6 5 4 8 8 H 1.08003 * 119.99905 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00195 * 180.02562 * 7 6 5 10 10 N 1.31506 * 119.99857 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47067 * 90.00041 * 11 9 7 13 13 H 1.48502 * 109.46898 * 209.99627 * 11 9 7 14 14 H 1.48499 * 109.47300 * 329.99649 * 11 9 7 15 15 C 1.38993 * 119.99898 * 89.99927 * 5 4 3 16 16 C 1.39342 * 120.09370 * 184.97560 * 15 5 4 17 17 N 1.31915 * 119.88952 * 180.02562 * 16 15 5 18 18 C 1.32276 * 120.08948 * 359.73288 * 17 16 15 19 19 C 1.50701 * 119.90656 * 180.25531 * 18 17 16 20 20 C 1.38157 * 120.18905 * 0.52698 * 18 17 16 21 21 C 1.50706 * 119.94473 * 179.75496 * 20 18 17 22 22 N 1.32252 * 120.11237 * 359.47337 * 20 18 17 23 23 H 1.09007 * 109.46686 * 299.99874 * 1 2 3 24 24 H 1.08997 * 109.47121 * 59.99617 * 1 2 3 25 25 H 1.08990 * 109.47092 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47027 * 60.00485 * 3 2 1 27 27 H 1.08996 * 109.47125 * 300.00020 * 3 2 1 28 28 H 1.08996 * 109.46891 * 304.99886 * 4 3 2 29 29 H 1.09005 * 109.46695 * 184.99806 * 4 3 2 30 30 H 1.09000 * 109.46807 * 30.00483 * 6 5 4 31 31 H 1.09001 * 109.46707 * 150.00123 * 6 5 4 32 32 H 0.97007 * 120.00024 * 180.02562 * 10 9 7 33 33 H 1.07995 * 120.05424 * 0.04377 * 16 15 5 34 34 H 1.08999 * 109.46895 * 270.26892 * 19 18 17 35 35 H 1.08997 * 109.47210 * 30.26565 * 19 18 17 36 36 H 1.08995 * 109.47263 * 150.27013 * 19 18 17 37 37 H 1.09001 * 109.46953 * 269.71798 * 21 20 18 38 38 H 1.09000 * 109.47318 * 29.71396 * 21 20 18 39 39 H 1.09000 * 109.47161 * 149.72027 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5009 -1.2979 -0.9449 8 1 6.2198 -0.5460 -0.6545 9 6 5.8606 -2.6289 -0.9527 10 7 4.9854 -3.5444 -1.3067 11 14 7.5909 -3.1317 -0.4602 12 1 7.6355 -3.3845 1.0024 13 1 7.9731 -4.3684 -1.1881 14 1 8.5397 -2.0421 -0.8034 15 6 4.2705 1.3578 -2.3553 16 6 4.5888 0.7667 -3.5763 17 7 4.8684 1.5236 -4.6199 18 6 4.8416 2.8415 -4.5096 19 6 5.1561 3.7022 -5.7060 20 6 4.5316 3.4312 -3.2993 21 6 4.5081 4.9332 -3.1784 22 7 4.2501 2.6798 -2.2479 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8464 0.8900 27 1 1.6887 1.8464 -0.8899 28 1 3.8514 0.5682 0.8409 29 1 3.9786 2.1765 0.0889 30 1 3.3852 -1.3629 -0.6734 31 1 3.9120 -1.2114 -2.3669 32 1 5.2383 -4.4809 -1.3119 33 1 4.6064 -0.3091 -3.6682 34 1 6.2267 3.9042 -5.7369 35 1 4.8581 3.1820 -6.6163 36 1 4.6109 4.6430 -5.6301 37 1 5.4961 5.2897 -2.8870 38 1 4.2324 5.3707 -4.1379 39 1 3.7790 5.2255 -2.4227 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164604861.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:50 Heat of formation + Delta-G solvation = -15.374389 kcal Electronic energy + Delta-G solvation = -20486.798597 eV Core-core repulsion = 17429.032463 eV Total energy + Delta-G solvation = -3057.766134 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96743 -39.22165 -37.72416 -35.36186 -34.84690 -33.86011 -31.40857 -29.75472 -28.81872 -27.60488 -26.69040 -25.00143 -24.10280 -23.31597 -21.57295 -18.77503 -18.66406 -18.12574 -17.11491 -16.99879 -16.66044 -16.39979 -16.13744 -15.71753 -15.20945 -14.76733 -14.60091 -13.86582 -13.75094 -13.68326 -13.57011 -13.51698 -13.22567 -13.03218 -12.79868 -12.76404 -12.54458 -12.42009 -12.26303 -12.17408 -11.93076 -11.85303 -11.63260 -10.65788 -10.61256 -10.44181 -9.86753 -8.49244 -8.07237 -6.37326 0.15183 0.47012 1.36939 1.38081 1.48481 2.10028 2.39190 2.87883 2.96536 3.07478 3.42030 3.50782 3.73303 4.10933 4.15985 4.21454 4.27995 4.39979 4.49494 4.52414 4.59332 4.60593 4.71128 4.80620 4.80991 4.92852 4.94110 5.04193 5.13366 5.17634 5.19223 5.30362 5.63594 5.69139 6.00977 6.07128 6.27210 6.56711 6.66655 6.82857 7.14726 7.34334 8.83833 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.007394 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.472125 B = 3785.927793 C = 5266.009457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.058 3.942 4 C 0.129 3.871 5 N -0.578 5.578 6 C 0.276 3.724 7 C -0.548 4.548 8 H 0.048 0.952 9 C 0.018 3.982 10 N -0.921 5.921 11 Si 0.961 3.039 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.275 1.275 15 C 0.356 3.644 16 C -0.037 4.037 17 N -0.424 5.424 18 C -0.029 4.029 19 C -0.081 4.081 20 C 0.126 3.874 21 C -0.094 4.094 22 N -0.522 5.522 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.031 0.969 31 H 0.011 0.989 32 H 0.268 0.732 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.038 16.154 -1.416 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.333 6.333 3 C -0.020 4.020 4 C 0.005 3.995 5 N -0.287 5.287 6 C 0.155 3.845 7 C -0.587 4.587 8 H 0.066 0.934 9 C -0.182 4.182 10 N -0.560 5.560 11 Si 0.785 3.215 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.200 1.200 15 C 0.118 3.882 16 C -0.205 4.205 17 N -0.138 5.138 18 C -0.172 4.172 19 C -0.138 4.138 20 C -0.017 4.017 21 C -0.151 4.151 22 N -0.247 5.247 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.160 0.840 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.010 15.626 -1.251 16.457 hybrid contribution 0.582 -1.041 0.330 1.238 sum -4.428 14.584 -0.921 15.270 Atomic orbital electron populations 1.22854 0.80062 1.03246 1.00573 1.88016 1.21151 1.28668 1.95464 1.22984 0.93805 0.84524 1.00660 1.21487 0.92643 0.99405 0.85946 1.46889 1.66778 1.06158 1.08834 1.18905 0.95566 0.73677 0.96338 1.21733 0.98089 0.92492 1.46388 0.93389 1.25714 1.01353 0.96263 0.94880 1.70036 1.36242 1.01529 1.48187 0.85521 0.79578 0.77664 0.78688 1.19424 1.20301 1.19997 1.19426 0.91296 0.89058 0.88460 1.22904 1.07639 1.00692 0.89263 1.67993 1.08532 1.06895 1.30414 1.22331 1.05904 0.90664 0.98276 1.20627 1.02916 0.97939 0.92335 1.22551 0.91720 0.99234 0.88199 1.20889 1.04361 0.84742 1.05157 1.67853 1.21447 1.03082 1.32303 0.92141 0.94189 0.89507 0.89881 0.94327 0.90994 0.87983 0.95126 0.97149 0.92293 0.83976 0.90068 0.91541 0.87555 0.88717 0.87162 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.41 -15.26 9.53 -148.98 -1.42 -16.68 16 3 C 0.06 1.87 6.28 71.98 0.45 2.32 16 4 C 0.13 4.83 5.88 86.38 0.51 5.33 16 5 N -0.58 -26.20 2.53 -707.80 -1.79 -27.99 16 6 C 0.28 14.72 4.83 85.63 0.41 15.14 16 7 C -0.55 -31.21 9.39 25.60 0.24 -30.97 16 8 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 9 C 0.02 1.02 5.46 84.66 0.46 1.48 16 10 N -0.92 -54.50 13.29 21.45 0.28 -54.21 16 11 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 15 C 0.36 15.64 7.37 133.04 0.98 16.62 16 16 C -0.04 -1.70 10.43 84.95 0.89 -0.82 16 17 N -0.42 -17.49 10.41 -182.75 -1.90 -19.39 16 18 C -0.03 -0.95 6.78 42.47 0.29 -0.66 16 19 C -0.08 -1.71 9.78 71.24 0.70 -1.02 16 20 C 0.13 3.91 6.78 42.48 0.29 4.20 16 21 C -0.09 -1.74 9.78 71.24 0.70 -1.04 16 22 N -0.52 -19.64 9.18 -180.74 -1.66 -21.30 16 23 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 2.83 8.07 -2.39 -0.02 2.81 16 29 H 0.10 3.49 7.32 -2.38 -0.02 3.47 16 30 H 0.03 1.76 7.11 -2.39 -0.02 1.74 16 31 H 0.01 0.61 6.00 -2.39 -0.01 0.59 16 32 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.14 7.19 6.04 -2.91 -0.02 7.18 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.46 5.93 -2.39 -0.01 1.45 16 37 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.11 1.34 5.92 -2.39 -0.01 1.32 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.07 325.36 3.74 -66.33 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.04 Total: 13.89 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 7.16 Total: 12.60 kcal Atomic # 7 Polarization: -117.82 SS G_CDS: -5.07 Total: -122.89 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.42 Total: -16.68 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -70.07 3.74 -66.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164604861.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.960 kcal (2) G-P(sol) polarization free energy of solvation -70.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds