Wall clock time and date at job start Mon Mar 30 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99663 * 2 1 4 4 C 1.50694 * 109.47507 * 58.04406 * 3 2 1 5 5 N 1.31318 * 126.07730 * 235.40498 * 4 3 2 6 6 N 1.28567 * 110.20597 * 179.97438 * 5 4 3 7 7 C 1.33023 * 109.35455 * 359.97438 * 6 5 4 8 8 C 1.40131 * 126.65640 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00553 * 179.97438 * 8 7 6 10 10 C 1.40242 * 119.99748 * 359.97150 * 8 7 6 11 11 N 1.30689 * 120.00277 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00086 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46696 * 90.00360 * 12 10 8 14 14 H 1.48496 * 109.47425 * 210.00491 * 12 10 8 15 15 H 1.48497 * 109.47248 * 330.00686 * 12 10 8 16 16 N 1.35299 * 126.08079 * 55.08403 * 4 3 2 17 17 H 0.97006 * 127.04349 * 359.97438 * 16 4 3 18 18 C 1.53001 * 109.47117 * 298.03721 * 3 2 1 19 19 C 1.52999 * 109.47138 * 300.00446 * 18 3 2 20 20 C 1.52999 * 109.47145 * 299.99917 * 19 18 3 21 21 C 1.53002 * 109.47186 * 180.02562 * 20 19 18 22 22 C 1.52993 * 109.47204 * 60.00178 * 20 19 18 23 23 C 1.53005 * 109.47355 * 299.99724 * 22 20 19 24 24 H 1.09005 * 109.47268 * 185.48772 * 1 2 3 25 25 H 1.09001 * 109.47383 * 305.48985 * 1 2 3 26 26 H 1.09001 * 109.47159 * 65.49479 * 1 2 3 27 27 H 0.96992 * 120.00039 * 179.97438 * 11 10 8 28 28 H 1.08999 * 109.46744 * 60.00290 * 18 3 2 29 29 H 1.09002 * 109.46895 * 180.02562 * 18 3 2 30 30 H 1.08999 * 109.46688 * 179.97438 * 19 18 3 31 31 H 1.09002 * 109.47183 * 60.00231 * 19 18 3 32 32 H 1.09002 * 109.47336 * 300.00220 * 20 19 18 33 33 H 1.09002 * 109.46713 * 300.00051 * 21 20 19 34 34 H 1.08999 * 109.47117 * 59.99596 * 21 20 19 35 35 H 1.08997 * 109.47111 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.46913 * 180.02562 * 22 20 19 37 37 H 1.08999 * 109.47258 * 60.00213 * 22 20 19 38 38 H 1.08999 * 109.47337 * 300.00441 * 23 22 20 39 39 H 1.08994 * 109.47333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5275 2.0703 1.2054 5 7 0.9308 3.2400 1.1911 6 7 0.6499 3.6099 2.3900 7 6 1.0598 2.6781 3.2463 8 6 0.9352 2.7112 4.6416 9 1 1.3079 1.8908 5.2368 10 6 0.3264 3.8100 5.2653 11 7 -0.1251 4.8027 4.5451 12 14 0.1595 3.8540 7.1253 13 1 1.3595 4.5003 7.7147 14 1 -1.0521 4.6286 7.4955 15 1 0.0385 2.4679 7.6444 16 7 1.6265 1.6711 2.4944 17 1 2.0170 0.8459 2.8223 18 6 1.5981 2.0471 -1.2732 19 6 2.0882 1.2706 -2.4970 20 6 3.6127 1.1502 -2.4477 21 6 4.1028 0.3742 -3.6718 22 6 4.0247 0.4085 -1.1746 23 6 3.5347 1.1850 0.0494 24 1 -0.3634 -1.0230 0.0983 25 1 -0.3634 0.5966 0.8367 26 1 -0.3633 0.4263 -0.9351 27 1 -0.5465 5.5624 4.9764 28 1 0.5121 2.1329 -1.3083 29 1 2.0418 3.0428 -1.2734 30 1 1.7943 1.7988 -3.4040 31 1 1.6448 0.2749 -2.4970 32 1 4.0561 2.1459 -2.4477 33 1 3.6595 -0.6216 -3.6722 34 1 3.8093 0.9029 -4.5787 35 1 5.1888 0.2880 -3.6365 36 1 5.1108 0.3231 -1.1392 37 1 3.5814 -0.5873 -1.1745 38 1 3.9780 2.1808 0.0493 39 1 3.8279 0.6564 0.9563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227838863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:48 Heat of formation + Delta-G solvation = -5.124939 kcal Electronic energy + Delta-G solvation = -21006.596460 eV Core-core repulsion = 17949.274776 eV Total energy + Delta-G solvation = -3057.321684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95788 -39.11714 -36.13955 -33.62401 -32.08102 -31.68674 -30.57551 -29.04626 -26.76819 -26.13871 -24.57376 -22.49131 -21.60857 -20.60627 -19.84916 -19.18538 -17.52838 -16.18753 -15.90613 -15.26837 -15.05547 -14.49598 -14.22225 -14.08945 -13.77812 -13.36831 -13.17068 -12.79317 -12.52497 -12.11995 -11.99835 -11.63010 -11.38444 -11.34397 -11.24923 -11.04237 -10.90874 -10.76468 -10.41949 -10.33566 -10.09058 -9.91243 -9.61963 -9.43322 -9.15258 -8.96533 -8.29713 -7.60743 -6.59135 -4.56231 2.96566 3.08958 3.12170 3.47001 3.90851 4.11484 4.45682 4.53235 4.89556 4.91024 4.97876 5.34425 5.36649 5.42827 5.52569 5.66049 5.70504 5.73373 5.78216 5.79989 5.85639 5.89832 5.95522 6.05454 6.12220 6.22476 6.29805 6.33382 6.43241 6.47285 6.65865 6.71632 6.95655 7.08370 7.30397 7.52438 7.67400 8.22276 8.26900 8.78881 9.07300 10.34097 10.79382 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.041561 B = 0.004720 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.544534 B = 5930.762747 C = 5946.043256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.380 6.380 3 C 0.227 3.773 4 C 0.037 3.963 5 N -0.287 5.287 6 N -0.338 5.338 7 C 0.337 3.663 8 C -0.457 4.457 9 H 0.081 0.919 10 C 0.080 3.920 11 N -0.740 5.740 12 Si 0.918 3.082 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.264 1.264 16 N -0.627 5.627 17 H 0.402 0.598 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.093 4.093 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.099 4.099 24 H 0.075 0.925 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.278 0.722 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 -8.444 -9.096 13.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.298 6.298 3 C 0.185 3.815 4 C -0.229 4.229 5 N -0.132 5.132 6 N -0.186 5.186 7 C 0.091 3.909 8 C -0.497 4.497 9 H 0.099 0.901 10 C -0.145 4.145 11 N -0.364 5.364 12 Si 0.742 3.258 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.188 1.188 16 N -0.245 5.245 17 H 0.238 0.762 18 C -0.162 4.162 19 C -0.147 4.147 20 C -0.112 4.112 21 C -0.202 4.202 22 C -0.145 4.145 23 C -0.137 4.137 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.599 -6.970 -9.766 12.849 hybrid contribution 0.416 -1.309 1.734 2.212 sum 5.014 -8.278 -8.032 12.577 Atomic orbital electron populations 1.22633 0.81468 1.01457 1.00711 1.87837 1.19624 1.27557 1.94803 1.19308 0.92268 0.80900 0.89025 1.23984 1.14010 0.99000 0.85917 1.74011 1.11791 1.08320 1.19085 1.75614 1.27625 1.22727 0.92649 1.21624 0.91653 0.83219 0.94387 1.18154 1.38482 1.05748 0.87333 0.90063 1.25760 0.93756 0.94495 1.00459 1.69952 1.24468 1.04984 1.36979 0.86169 0.78528 0.79276 0.81814 1.19468 1.20081 1.18771 1.43776 1.53758 1.20493 1.06467 0.76220 1.21823 1.01963 0.99550 0.92854 1.21549 0.94983 1.00717 0.97446 1.21150 0.96078 0.99305 0.94618 1.21813 1.00580 1.00246 0.97553 1.21525 0.99771 0.99681 0.93561 1.21510 0.92530 1.01197 0.98449 0.90631 0.93399 0.94142 0.91121 0.91173 0.90351 0.92279 0.91681 0.91379 0.92814 0.92984 0.93032 0.92376 0.91173 0.90546 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.28 101.05 1.04 1.59 16 2 O -0.38 -6.50 8.99 -35.23 -0.32 -6.81 16 3 C 0.23 4.03 0.68 -91.77 -0.06 3.97 16 4 C 0.04 0.83 5.18 -154.50 -0.80 0.03 16 5 N -0.29 -7.66 11.53 32.88 0.38 -7.28 16 6 N -0.34 -10.03 10.53 31.22 0.33 -9.70 16 7 C 0.34 9.26 7.73 -155.22 -1.20 8.07 16 8 C -0.46 -12.16 9.46 -38.12 -0.36 -12.52 16 9 H 0.08 1.98 7.85 -52.49 -0.41 1.56 16 10 C 0.08 2.07 5.50 -17.29 -0.10 1.97 16 11 N -0.74 -20.46 11.95 55.56 0.66 -19.80 16 12 Si 0.92 18.74 29.56 -169.99 -5.03 13.72 16 13 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 14 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 15 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 16 N -0.63 -14.57 6.29 -9.38 -0.06 -14.63 16 17 H 0.40 8.13 8.96 -40.82 -0.37 7.77 16 18 C -0.12 -2.04 3.90 -26.73 -0.10 -2.14 16 19 C -0.11 -1.43 5.06 -26.73 -0.14 -1.56 16 20 C -0.09 -1.11 2.72 -90.62 -0.25 -1.35 16 21 C -0.14 -1.42 9.19 37.16 0.34 -1.08 16 22 C -0.11 -1.37 5.06 -26.73 -0.14 -1.50 16 23 C -0.10 -1.54 4.93 -26.72 -0.13 -1.67 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.94 6.91 -51.93 -0.36 0.58 16 26 H 0.04 0.61 6.75 -51.93 -0.35 0.26 16 27 H 0.28 6.95 8.29 -40.82 -0.34 6.61 16 28 H 0.07 1.24 6.70 -51.93 -0.35 0.89 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 38 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 312.11 15.07 4.70 4.70 Total: -1.00 -31.09 312.11 -7.21 -38.30 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.99 Total: 7.72 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.89 Total: -6.21 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 1.31 Total: -51.42 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.32 Total: -6.81 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.09 -7.21 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.176 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds