Wall clock time and date at job start Mon Mar 30 2020 04:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99663 * 2 1 4 4 C 1.50694 * 109.47507 * 58.04406 * 3 2 1 5 5 N 1.31318 * 126.07730 * 235.40498 * 4 3 2 6 6 N 1.28567 * 110.20597 * 179.97438 * 5 4 3 7 7 C 1.33023 * 109.35455 * 359.97438 * 6 5 4 8 8 C 1.40131 * 126.65640 * 180.02562 * 7 6 5 9 9 H 1.07994 * 120.00553 * 179.97438 * 8 7 6 10 10 C 1.40242 * 119.99748 * 359.97150 * 8 7 6 11 11 N 1.30689 * 120.00277 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00086 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46696 * 90.00360 * 12 10 8 14 14 H 1.48496 * 109.47425 * 210.00491 * 12 10 8 15 15 H 1.48497 * 109.47248 * 330.00686 * 12 10 8 16 16 N 1.35299 * 126.08079 * 55.08403 * 4 3 2 17 17 H 0.97006 * 127.04349 * 359.97438 * 16 4 3 18 18 C 1.53001 * 109.47117 * 298.03721 * 3 2 1 19 19 C 1.52999 * 109.47138 * 300.00446 * 18 3 2 20 20 C 1.52999 * 109.47145 * 299.99917 * 19 18 3 21 21 C 1.53002 * 109.47186 * 180.02562 * 20 19 18 22 22 C 1.52993 * 109.47204 * 60.00178 * 20 19 18 23 23 C 1.53005 * 109.47355 * 299.99724 * 22 20 19 24 24 H 1.09005 * 109.47268 * 185.48772 * 1 2 3 25 25 H 1.09001 * 109.47383 * 305.48985 * 1 2 3 26 26 H 1.09001 * 109.47159 * 65.49479 * 1 2 3 27 27 H 0.96992 * 120.00039 * 179.97438 * 11 10 8 28 28 H 1.08999 * 109.46744 * 60.00290 * 18 3 2 29 29 H 1.09002 * 109.46895 * 180.02562 * 18 3 2 30 30 H 1.08999 * 109.46688 * 179.97438 * 19 18 3 31 31 H 1.09002 * 109.47183 * 60.00231 * 19 18 3 32 32 H 1.09002 * 109.47336 * 300.00220 * 20 19 18 33 33 H 1.09002 * 109.46713 * 300.00051 * 21 20 19 34 34 H 1.08999 * 109.47117 * 59.99596 * 21 20 19 35 35 H 1.08997 * 109.47111 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.46913 * 180.02562 * 22 20 19 37 37 H 1.08999 * 109.47258 * 60.00213 * 22 20 19 38 38 H 1.08999 * 109.47337 * 300.00441 * 23 22 20 39 39 H 1.08994 * 109.47333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5275 2.0703 1.2054 5 7 0.9308 3.2400 1.1911 6 7 0.6499 3.6099 2.3900 7 6 1.0598 2.6781 3.2463 8 6 0.9352 2.7112 4.6416 9 1 1.3079 1.8908 5.2368 10 6 0.3264 3.8100 5.2653 11 7 -0.1251 4.8027 4.5451 12 14 0.1595 3.8540 7.1253 13 1 1.3595 4.5003 7.7147 14 1 -1.0521 4.6286 7.4955 15 1 0.0385 2.4679 7.6444 16 7 1.6265 1.6711 2.4944 17 1 2.0170 0.8459 2.8223 18 6 1.5981 2.0471 -1.2732 19 6 2.0882 1.2706 -2.4970 20 6 3.6127 1.1502 -2.4477 21 6 4.1028 0.3742 -3.6718 22 6 4.0247 0.4085 -1.1746 23 6 3.5347 1.1850 0.0494 24 1 -0.3634 -1.0230 0.0983 25 1 -0.3634 0.5966 0.8367 26 1 -0.3633 0.4263 -0.9351 27 1 -0.5465 5.5624 4.9764 28 1 0.5121 2.1329 -1.3083 29 1 2.0418 3.0428 -1.2734 30 1 1.7943 1.7988 -3.4040 31 1 1.6448 0.2749 -2.4970 32 1 4.0561 2.1459 -2.4477 33 1 3.6595 -0.6216 -3.6722 34 1 3.8093 0.9029 -4.5787 35 1 5.1888 0.2880 -3.6365 36 1 5.1108 0.3231 -1.1392 37 1 3.5814 -0.5873 -1.1745 38 1 3.9780 2.1808 0.0493 39 1 3.8279 0.6564 0.9563 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227838863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:48 Heat of formation + Delta-G solvation = -25.167368 kcal Electronic energy + Delta-G solvation = -21007.465565 eV Core-core repulsion = 17949.274776 eV Total energy + Delta-G solvation = -3058.190789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.86303 -40.51335 -37.35275 -35.57330 -33.85733 -33.19220 -31.81338 -30.83728 -28.15334 -27.71817 -26.09956 -23.74866 -23.11653 -22.52034 -21.33216 -20.54981 -19.31484 -18.06888 -17.29242 -16.94023 -16.44306 -16.25756 -15.82919 -15.19215 -14.98900 -14.90279 -14.78413 -13.91125 -13.69712 -13.47505 -13.23523 -13.07094 -13.00564 -12.92597 -12.67446 -12.38453 -12.11536 -12.01446 -11.97962 -11.63983 -11.43802 -11.31600 -11.18350 -11.14289 -10.94793 -10.54812 -10.28897 -9.64304 -8.51672 -6.61875 1.28012 1.41547 1.57758 1.69058 2.19107 2.45572 2.58574 2.87354 3.37609 3.64394 3.78375 3.80915 4.11600 4.17897 4.25714 4.42727 4.49057 4.52972 4.56574 4.64452 4.71766 4.83681 4.90217 4.94783 5.01380 5.04465 5.09241 5.15986 5.24235 5.29608 5.31569 5.35656 5.45738 5.48122 5.56361 5.65935 6.15030 6.23824 6.35647 6.79816 7.16933 8.44800 8.78156 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.041561 B = 0.004720 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.544534 B = 5930.762747 C = 5946.043256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.373 6.373 3 C 0.225 3.775 4 C 0.071 3.929 5 N -0.332 5.332 6 N -0.391 5.391 7 C 0.311 3.689 8 C -0.484 4.484 9 H 0.098 0.902 10 C 0.031 3.969 11 N -0.790 5.790 12 Si 1.005 2.995 13 H -0.261 1.261 14 H -0.271 1.271 15 H -0.251 1.251 16 N -0.619 5.619 17 H 0.417 0.583 18 C -0.120 4.120 19 C -0.101 4.101 20 C -0.093 4.093 21 C -0.139 4.139 22 C -0.099 4.099 23 C -0.098 4.098 24 H 0.108 0.892 25 H 0.008 0.992 26 H 0.052 0.948 27 H 0.283 0.717 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -10.502 -9.492 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C 0.183 3.817 4 C -0.198 4.198 5 N -0.174 5.174 6 N -0.238 5.238 7 C 0.063 3.937 8 C -0.524 4.524 9 H 0.116 0.884 10 C -0.189 4.189 11 N -0.415 5.415 12 Si 0.824 3.176 13 H -0.186 1.186 14 H -0.195 1.195 15 H -0.174 1.174 16 N -0.238 5.238 17 H 0.254 0.746 18 C -0.159 4.159 19 C -0.138 4.138 20 C -0.112 4.112 21 C -0.196 4.196 22 C -0.137 4.137 23 C -0.137 4.137 24 H 0.127 0.873 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.792 -9.040 -10.190 14.802 hybrid contribution 0.058 -0.741 1.741 1.893 sum 5.850 -9.781 -8.448 14.187 Atomic orbital electron populations 1.22717 0.80942 1.02868 0.99611 1.87849 1.20048 1.26511 1.94600 1.19595 0.93839 0.80922 0.87309 1.25009 1.09984 0.97745 0.87095 1.73914 1.14384 1.10650 1.18495 1.75501 1.29735 1.24695 0.93851 1.21991 0.92528 0.84007 0.95146 1.18675 1.39345 1.06993 0.87389 0.88380 1.26921 0.92440 0.93383 1.06189 1.70096 1.25631 1.06018 1.39756 0.84883 0.78683 0.79842 0.74204 1.18613 1.19547 1.17413 1.43763 1.53186 1.20467 1.06395 0.74559 1.21787 1.00842 0.99247 0.93992 1.21520 0.96027 1.00339 0.95953 1.21162 0.94969 0.99609 0.95422 1.21755 1.01309 1.00078 0.96480 1.21496 1.01028 0.99031 0.92113 1.21530 0.90433 1.01344 1.00362 0.87347 0.97370 0.92988 0.90645 0.92917 0.92010 0.90719 0.91225 0.91637 0.92363 0.92140 0.91885 0.90222 0.90974 0.91516 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.11 10.28 113.37 1.16 2.27 16 2 O -0.37 -12.16 8.99 -148.98 -1.34 -13.50 16 3 C 0.23 7.92 0.68 -11.54 -0.01 7.91 16 4 C 0.07 3.27 5.18 137.81 0.71 3.99 16 5 N -0.33 -18.55 11.53 -49.88 -0.57 -19.12 16 6 N -0.39 -24.36 10.53 -55.14 -0.58 -24.94 16 7 C 0.31 17.71 7.73 133.51 1.03 18.75 16 8 C -0.48 -26.27 9.46 23.22 0.22 -26.05 16 9 H 0.10 4.77 7.85 -2.91 -0.02 4.75 16 10 C 0.03 1.62 5.50 85.35 0.47 2.09 16 11 N -0.79 -45.29 11.95 21.88 0.26 -45.03 16 12 Si 1.00 38.48 29.56 68.60 2.03 40.51 16 13 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 14 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 15 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 16 N -0.62 -29.40 6.29 -183.58 -1.15 -30.55 16 17 H 0.42 16.88 8.96 -92.70 -0.83 16.05 16 18 C -0.12 -3.94 3.90 30.59 0.12 -3.82 16 19 C -0.10 -2.42 5.06 30.59 0.15 -2.26 16 20 C -0.09 -1.95 2.72 -10.80 -0.03 -1.98 16 21 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 22 C -0.10 -2.23 5.06 30.59 0.15 -2.07 16 23 C -0.10 -2.95 4.93 30.60 0.15 -2.80 16 24 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 25 H 0.01 0.30 6.91 -2.39 -0.02 0.29 16 26 H 0.05 1.52 6.75 -2.39 -0.02 1.51 16 27 H 0.28 14.68 8.29 -92.71 -0.77 13.91 16 28 H 0.05 1.88 6.70 -2.39 -0.02 1.87 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.63 7.68 -2.39 -0.02 1.61 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.63 7.68 -2.39 -0.02 1.62 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -70.86 312.11 3.66 -67.19 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.22 Total: 30.97 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.80 Total: -5.52 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -2.05 Total: -119.64 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.34 Total: -13.50 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -70.86 3.66 -67.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227838863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.026 kcal (2) G-P(sol) polarization free energy of solvation -70.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds