Wall clock time and date at job start Mon Mar 30 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47377 * 2 1 4 4 N 1.46505 * 109.46990 * 179.97438 * 3 2 1 5 5 C 1.38355 * 119.99924 * 179.97438 * 4 3 2 6 6 C 1.41186 * 120.29950 * 359.97438 * 5 4 3 7 7 N 1.30336 * 120.39081 * 179.74953 * 6 5 4 8 8 N 1.39876 * 121.01609 * 0.53266 * 7 6 5 9 9 C 1.46496 * 119.72119 * 179.73934 * 8 7 6 10 10 C 1.52997 * 109.47294 * 269.72767 * 9 8 7 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12 18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12 20 20 C 1.34760 * 120.55619 * 359.47038 * 8 7 6 21 21 O 1.22148 * 120.19681 * 180.27726 * 20 8 7 22 22 C 1.38253 * 120.30192 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47392 * 300.00200 * 1 2 3 24 24 H 1.09001 * 109.47025 * 59.99878 * 1 2 3 25 25 H 1.08993 * 109.47531 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47392 * 239.99800 * 2 1 3 27 27 H 1.09001 * 109.47025 * 120.00122 * 2 1 3 28 28 H 1.09002 * 109.46949 * 60.00125 * 3 2 1 29 29 H 1.08992 * 109.47217 * 299.99773 * 3 2 1 30 30 H 0.96994 * 119.99938 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.80784 * 0.04508 * 6 5 4 32 32 H 1.09001 * 109.47054 * 149.72499 * 9 8 7 33 33 H 1.09004 * 109.47074 * 29.73013 * 9 8 7 34 34 H 1.09001 * 109.46832 * 60.00150 * 10 9 8 35 35 H 1.08993 * 109.47194 * 299.99671 * 10 9 8 36 36 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 37 37 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 38 38 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.07996 * 120.48115 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1969 2.6405 0.0002 6 6 3.4975 3.8669 -0.0014 7 7 4.1474 4.9967 0.0031 8 7 5.5459 5.0237 -0.0015 9 6 6.2475 6.3097 -0.0020 10 6 6.4929 6.7562 -1.4447 11 6 7.2252 8.0997 -1.4452 12 6 7.4675 8.5392 -2.8661 13 1 7.1323 7.9222 -3.6868 14 6 8.1160 9.7294 -3.1185 15 7 8.5237 10.4810 -2.1191 16 14 8.4158 10.2746 -4.8799 17 1 7.1149 10.4192 -5.5814 18 1 9.1254 11.5791 -4.8803 19 1 9.2445 9.2593 -5.5780 20 6 6.2533 3.8767 -0.0001 21 8 7.4743 3.9079 0.0009 22 6 5.5794 2.6477 0.0002 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.9900 0.6024 0.0006 31 1 2.4175 3.8690 -0.0015 32 1 7.2024 6.2029 0.5127 33 1 5.6398 7.0553 0.5107 34 1 5.5380 6.8631 -1.9593 35 1 7.1006 6.0107 -1.9574 36 1 6.6171 8.8451 -0.9325 37 1 8.1800 7.9933 -0.9303 38 1 8.9803 11.3181 -2.2967 39 1 6.1321 1.7199 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232379381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:02 Heat of formation + Delta-G solvation = 7.272804 kcal Electronic energy + Delta-G solvation = -19216.765026 eV Core-core repulsion = 16159.980949 eV Total energy + Delta-G solvation = -3056.784078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.75385 -38.21139 -36.51718 -35.05906 -33.81641 -32.50766 -30.77720 -30.50170 -27.12264 -26.05217 -24.78223 -23.25338 -22.13170 -21.89995 -20.24119 -18.08683 -17.45949 -17.21964 -16.15662 -16.09292 -15.59736 -15.39890 -14.98011 -14.39331 -13.92040 -13.72304 -13.68706 -13.46186 -13.13381 -12.58022 -12.42389 -12.38321 -12.09085 -11.71441 -11.57186 -11.43748 -11.07888 -10.98085 -10.72736 -10.62143 -10.54860 -9.68787 -9.64031 -9.34856 -9.11790 -8.47295 -8.28561 -8.04383 -5.93933 -3.95801 0.68240 1.97962 2.41054 2.84814 3.38547 3.42063 3.45383 3.70412 4.17219 4.33401 4.38892 4.49880 4.52979 4.66855 4.87975 5.00287 5.04819 5.08468 5.41773 5.43499 5.53516 5.55129 5.62314 5.69566 5.81950 5.91523 6.10604 6.16388 6.24316 6.68008 6.69278 6.93860 7.09109 7.12885 7.71867 7.84348 7.91569 8.05356 8.33109 8.48602 9.09897 9.67445 11.17518 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.003155 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.232882 B = 8872.732672 C = 9230.678665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C 0.110 3.890 4 N -0.724 5.724 5 C 0.232 3.768 6 C 0.033 3.967 7 N -0.181 5.181 8 N -0.411 5.411 9 C 0.122 3.878 10 C -0.120 4.120 11 C 0.026 3.974 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.518 3.482 21 O -0.548 6.548 22 C -0.304 4.304 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.406 0.594 31 H 0.185 0.815 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.879 -21.246 6.719 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C -0.013 4.013 4 N -0.352 5.352 5 C 0.119 3.881 6 C -0.168 4.168 7 N 0.005 4.995 8 N -0.232 5.232 9 C 0.002 3.998 10 C -0.159 4.159 11 C -0.012 4.012 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.316 3.684 21 O -0.427 6.427 22 C -0.341 4.341 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.242 0.758 31 H 0.202 0.798 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.357 -20.001 6.775 27.335 hybrid contribution 0.477 -0.905 -1.011 1.439 sum -16.880 -20.906 5.764 27.481 Atomic orbital electron populations 1.21687 0.94305 1.02406 1.02454 1.21702 0.97079 0.95553 1.03031 1.21637 0.79362 0.98241 1.02098 1.44563 1.05939 1.05501 1.79222 1.18846 0.91734 0.87097 0.90403 1.23620 1.00936 0.87054 1.05167 1.75000 0.92789 1.25232 1.06525 1.50048 1.00638 1.09710 1.62797 1.22091 0.96417 0.80177 1.01110 1.21991 1.00832 1.00628 0.92407 1.19035 0.95275 0.89504 0.97402 1.21167 1.37124 1.05009 0.92360 0.92804 1.25013 0.95727 0.96652 0.97064 1.69955 1.39688 1.13202 1.30656 0.86639 0.78344 0.77775 0.85133 1.20285 1.21277 1.20250 1.16980 0.88317 0.84009 0.79115 1.90996 1.12237 1.86494 1.52979 1.21828 0.91757 0.99167 1.21392 0.92218 0.92176 0.92099 0.91110 0.91156 0.91331 0.91269 0.75775 0.79834 0.88506 0.89386 0.92880 0.92770 0.96268 0.96174 0.92959 0.83450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.91 37.16 0.37 -0.06 16 2 C -0.14 -0.43 6.05 -26.73 -0.16 -0.60 16 3 C 0.11 0.48 4.91 -4.04 -0.02 0.46 16 4 N -0.72 -4.77 5.68 -58.53 -0.33 -5.10 16 5 C 0.23 2.43 6.67 -83.79 -0.56 1.88 16 6 C 0.03 0.36 10.59 -17.07 -0.18 0.18 16 7 N -0.18 -2.68 11.53 30.82 0.36 -2.33 16 8 N -0.41 -7.35 3.50 -63.59 -0.22 -7.57 16 9 C 0.12 2.38 5.69 -4.05 -0.02 2.36 16 10 C -0.12 -2.73 5.48 -26.73 -0.15 -2.88 16 11 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16 12 C -0.52 -15.35 9.11 -34.44 -0.31 -15.66 16 13 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 15 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 16 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C 0.52 9.60 7.47 -15.55 -0.12 9.48 16 21 O -0.55 -12.32 16.68 4.78 0.08 -12.24 16 22 C -0.30 -4.23 9.89 -38.86 -0.38 -4.61 16 23 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.26 7.95 -51.93 -0.41 -0.15 16 29 H 0.07 0.29 7.95 -51.93 -0.41 -0.13 16 30 H 0.41 2.15 8.47 -40.82 -0.35 1.81 16 31 H 0.19 1.21 6.77 -52.49 -0.36 0.85 16 32 H 0.10 1.97 7.40 -51.93 -0.38 1.58 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 39 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -35.70 331.81 -7.28 -42.98 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.10 Total: -3.89 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.77 Total: -7.33 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.54 Total: -41.90 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.70 -7.28 -42.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232379381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.251 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds