Wall clock time and date at job start Mon Mar 30 2020 05:27:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47377 * 2 1
4 4 N 1.46505 * 109.46990 * 179.97438 * 3 2 1
5 5 C 1.38355 * 119.99924 * 179.97438 * 4 3 2
6 6 C 1.41186 * 120.29950 * 359.97438 * 5 4 3
7 7 N 1.30336 * 120.39081 * 179.74953 * 6 5 4
8 8 N 1.39876 * 121.01609 * 0.53266 * 7 6 5
9 9 C 1.46496 * 119.72119 * 179.73934 * 8 7 6
10 10 C 1.52997 * 109.47294 * 269.72767 * 9 8 7
11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8
12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9
13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10
14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10
15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11
16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12
18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12
19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12
20 20 C 1.34760 * 120.55619 * 359.47038 * 8 7 6
21 21 O 1.22148 * 120.19681 * 180.27726 * 20 8 7
22 22 C 1.38253 * 120.30192 * 180.02562 * 5 4 3
23 23 H 1.09002 * 109.47392 * 300.00200 * 1 2 3
24 24 H 1.09001 * 109.47025 * 59.99878 * 1 2 3
25 25 H 1.08993 * 109.47531 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47392 * 239.99800 * 2 1 3
27 27 H 1.09001 * 109.47025 * 120.00122 * 2 1 3
28 28 H 1.09002 * 109.46949 * 60.00125 * 3 2 1
29 29 H 1.08992 * 109.47217 * 299.99773 * 3 2 1
30 30 H 0.96994 * 119.99938 * 0.02562 * 4 3 2
31 31 H 1.08001 * 119.80784 * 0.04508 * 6 5 4
32 32 H 1.09001 * 109.47054 * 149.72499 * 9 8 7
33 33 H 1.09004 * 109.47074 * 29.73013 * 9 8 7
34 34 H 1.09001 * 109.46832 * 60.00150 * 10 9 8
35 35 H 1.08993 * 109.47194 * 299.99671 * 10 9 8
36 36 H 1.09001 * 109.46801 * 300.00272 * 11 10 9
37 37 H 1.09001 * 109.46998 * 59.99868 * 11 10 9
38 38 H 0.96997 * 119.99752 * 179.97438 * 15 14 12
39 39 H 1.07996 * 120.48115 * 0.02562 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5051 1.4424 0.0006
5 6 4.1969 2.6405 0.0002
6 6 3.4975 3.8669 -0.0014
7 7 4.1474 4.9967 0.0031
8 7 5.5459 5.0237 -0.0015
9 6 6.2475 6.3097 -0.0020
10 6 6.4929 6.7562 -1.4447
11 6 7.2252 8.0997 -1.4452
12 6 7.4675 8.5392 -2.8661
13 1 7.1323 7.9222 -3.6868
14 6 8.1160 9.7294 -3.1185
15 7 8.5237 10.4810 -2.1191
16 14 8.4158 10.2746 -4.8799
17 1 7.1149 10.4192 -5.5814
18 1 9.1254 11.5791 -4.8803
19 1 9.2445 9.2593 -5.5780
20 6 6.2533 3.8767 -0.0001
21 8 7.4743 3.9079 0.0009
22 6 5.5794 2.6477 0.0002
23 1 -0.3634 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 1.8934 -0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 1.6767 1.9563 0.8900
29 1 1.6768 1.9563 -0.8899
30 1 3.9900 0.6024 0.0006
31 1 2.4175 3.8690 -0.0015
32 1 7.2024 6.2029 0.5127
33 1 5.6398 7.0553 0.5107
34 1 5.5380 6.8631 -1.9593
35 1 7.1006 6.0107 -1.9574
36 1 6.6171 8.8451 -0.9325
37 1 8.1800 7.9933 -0.9303
38 1 8.9803 11.3181 -2.2967
39 1 6.1321 1.7199 0.0002
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000232379381.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:27:02
Heat of formation + Delta-G solvation = 7.272804 kcal
Electronic energy + Delta-G solvation = -19216.765026 eV
Core-core repulsion = 16159.980949 eV
Total energy + Delta-G solvation = -3056.784078 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-40.75385 -38.21139 -36.51718 -35.05906 -33.81641 -32.50766 -30.77720 -30.50170
-27.12264 -26.05217 -24.78223 -23.25338 -22.13170 -21.89995 -20.24119 -18.08683
-17.45949 -17.21964 -16.15662 -16.09292 -15.59736 -15.39890 -14.98011 -14.39331
-13.92040 -13.72304 -13.68706 -13.46186 -13.13381 -12.58022 -12.42389 -12.38321
-12.09085 -11.71441 -11.57186 -11.43748 -11.07888 -10.98085 -10.72736 -10.62143
-10.54860 -9.68787 -9.64031 -9.34856 -9.11790 -8.47295 -8.28561 -8.04383
-5.93933 -3.95801 0.68240 1.97962 2.41054 2.84814 3.38547 3.42063
3.45383 3.70412 4.17219 4.33401 4.38892 4.49880 4.52979 4.66855
4.87975 5.00287 5.04819 5.08468 5.41773 5.43499 5.53516 5.55129
5.62314 5.69566 5.81950 5.91523 6.10604 6.16388 6.24316 6.68008
6.69278 6.93860 7.09109 7.12885 7.71867 7.84348 7.91569 8.05356
8.33109 8.48602 9.09897 9.67445 11.17518
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.032391 B = 0.003155 C = 0.003033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.232882 B = 8872.732672 C = 9230.678665
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.136 4.136
3 C 0.110 3.890
4 N -0.724 5.724
5 C 0.232 3.768
6 C 0.033 3.967
7 N -0.181 5.181
8 N -0.411 5.411
9 C 0.122 3.878
10 C -0.120 4.120
11 C 0.026 3.974
12 C -0.518 4.518
13 H 0.054 0.946
14 C 0.056 3.944
15 N -0.896 5.896
16 Si 0.893 3.107
17 H -0.277 1.277
18 H -0.287 1.287
19 H -0.277 1.277
20 C 0.518 3.482
21 O -0.548 6.548
22 C -0.304 4.304
23 H 0.059 0.941
24 H 0.059 0.941
25 H 0.060 0.940
26 H 0.070 0.930
27 H 0.070 0.930
28 H 0.068 0.932
29 H 0.069 0.931
30 H 0.406 0.594
31 H 0.185 0.815
32 H 0.097 0.903
33 H 0.088 0.912
34 H 0.052 0.948
35 H 0.054 0.946
36 H 0.019 0.981
37 H 0.020 0.980
38 H 0.261 0.739
39 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.879 -21.246 6.719 28.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.174 4.174
3 C -0.013 4.013
4 N -0.352 5.352
5 C 0.119 3.881
6 C -0.168 4.168
7 N 0.005 4.995
8 N -0.232 5.232
9 C 0.002 3.998
10 C -0.159 4.159
11 C -0.012 4.012
12 C -0.557 4.557
13 H 0.072 0.928
14 C -0.145 4.145
15 N -0.535 5.535
16 Si 0.721 3.279
17 H -0.203 1.203
18 H -0.213 1.213
19 H -0.202 1.202
20 C 0.316 3.684
21 O -0.427 6.427
22 C -0.341 4.341
23 H 0.078 0.922
24 H 0.078 0.922
25 H 0.079 0.921
26 H 0.089 0.911
27 H 0.088 0.912
28 H 0.087 0.913
29 H 0.087 0.913
30 H 0.242 0.758
31 H 0.202 0.798
32 H 0.115 0.885
33 H 0.106 0.894
34 H 0.071 0.929
35 H 0.072 0.928
36 H 0.037 0.963
37 H 0.038 0.962
38 H 0.070 0.930
39 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -17.357 -20.001 6.775 27.335
hybrid contribution 0.477 -0.905 -1.011 1.439
sum -16.880 -20.906 5.764 27.481
Atomic orbital electron populations
1.21687 0.94305 1.02406 1.02454 1.21702 0.97079 0.95553 1.03031
1.21637 0.79362 0.98241 1.02098 1.44563 1.05939 1.05501 1.79222
1.18846 0.91734 0.87097 0.90403 1.23620 1.00936 0.87054 1.05167
1.75000 0.92789 1.25232 1.06525 1.50048 1.00638 1.09710 1.62797
1.22091 0.96417 0.80177 1.01110 1.21991 1.00832 1.00628 0.92407
1.19035 0.95275 0.89504 0.97402 1.21167 1.37124 1.05009 0.92360
0.92804 1.25013 0.95727 0.96652 0.97064 1.69955 1.39688 1.13202
1.30656 0.86639 0.78344 0.77775 0.85133 1.20285 1.21277 1.20250
1.16980 0.88317 0.84009 0.79115 1.90996 1.12237 1.86494 1.52979
1.21828 0.91757 0.99167 1.21392 0.92218 0.92176 0.92099 0.91110
0.91156 0.91331 0.91269 0.75775 0.79834 0.88506 0.89386 0.92880
0.92770 0.96268 0.96174 0.92959 0.83450
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.43 9.91 37.16 0.37 -0.06 16
2 C -0.14 -0.43 6.05 -26.73 -0.16 -0.60 16
3 C 0.11 0.48 4.91 -4.04 -0.02 0.46 16
4 N -0.72 -4.77 5.68 -58.53 -0.33 -5.10 16
5 C 0.23 2.43 6.67 -83.79 -0.56 1.88 16
6 C 0.03 0.36 10.59 -17.07 -0.18 0.18 16
7 N -0.18 -2.68 11.53 30.82 0.36 -2.33 16
8 N -0.41 -7.35 3.50 -63.59 -0.22 -7.57 16
9 C 0.12 2.38 5.69 -4.05 -0.02 2.36 16
10 C -0.12 -2.73 5.48 -26.73 -0.15 -2.88 16
11 C 0.03 0.69 4.97 -27.88 -0.14 0.55 16
12 C -0.52 -15.35 9.11 -34.44 -0.31 -15.66 16
13 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16
14 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
15 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16
16 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16
17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16
18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
20 C 0.52 9.60 7.47 -15.55 -0.12 9.48 16
21 O -0.55 -12.32 16.68 4.78 0.08 -12.24 16
22 C -0.30 -4.23 9.89 -38.86 -0.38 -4.61 16
23 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16
24 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16
25 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16
26 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16
27 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16
28 H 0.07 0.26 7.95 -51.93 -0.41 -0.15 16
29 H 0.07 0.29 7.95 -51.93 -0.41 -0.13 16
30 H 0.41 2.15 8.47 -40.82 -0.35 1.81 16
31 H 0.19 1.21 6.77 -52.49 -0.36 0.85 16
32 H 0.10 1.97 7.40 -51.93 -0.38 1.58 16
33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16
34 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16
35 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16
36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16
39 H 0.15 1.81 8.06 -52.49 -0.42 1.39 16
LS Contribution 331.81 15.07 5.00 5.00
Total: -1.00 -35.70 331.81 -7.28 -42.98
By element:
Atomic # 1 Polarization: 2.22 SS G_CDS: -6.10 Total: -3.89 kcal
Atomic # 6 Polarization: -5.55 SS G_CDS: -1.77 Total: -7.33 kcal
Atomic # 7 Polarization: -42.43 SS G_CDS: 0.54 Total: -41.90 kcal
Atomic # 8 Polarization: -12.32 SS G_CDS: 0.08 Total: -12.24 kcal
Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal
Total LS contribution 5.00 Total: 5.00 kcal
Total: -35.70 -7.28 -42.98 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000232379381.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.251 kcal
(2) G-P(sol) polarization free energy of solvation -35.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.273 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds