Wall clock time and date at job start Mon Mar 30 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47377 * 2 1 4 4 N 1.46505 * 109.46990 * 179.97438 * 3 2 1 5 5 C 1.38355 * 119.99924 * 179.97438 * 4 3 2 6 6 C 1.41186 * 120.29950 * 359.97438 * 5 4 3 7 7 N 1.30336 * 120.39081 * 179.74953 * 6 5 4 8 8 N 1.39876 * 121.01609 * 0.53266 * 7 6 5 9 9 C 1.46496 * 119.72119 * 179.73934 * 8 7 6 10 10 C 1.52997 * 109.47294 * 269.72767 * 9 8 7 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12 18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12 20 20 C 1.34760 * 120.55619 * 359.47038 * 8 7 6 21 21 O 1.22148 * 120.19681 * 180.27726 * 20 8 7 22 22 C 1.38253 * 120.30192 * 180.02562 * 5 4 3 23 23 H 1.09002 * 109.47392 * 300.00200 * 1 2 3 24 24 H 1.09001 * 109.47025 * 59.99878 * 1 2 3 25 25 H 1.08993 * 109.47531 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47392 * 239.99800 * 2 1 3 27 27 H 1.09001 * 109.47025 * 120.00122 * 2 1 3 28 28 H 1.09002 * 109.46949 * 60.00125 * 3 2 1 29 29 H 1.08992 * 109.47217 * 299.99773 * 3 2 1 30 30 H 0.96994 * 119.99938 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.80784 * 0.04508 * 6 5 4 32 32 H 1.09001 * 109.47054 * 149.72499 * 9 8 7 33 33 H 1.09004 * 109.47074 * 29.73013 * 9 8 7 34 34 H 1.09001 * 109.46832 * 60.00150 * 10 9 8 35 35 H 1.08993 * 109.47194 * 299.99671 * 10 9 8 36 36 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 37 37 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 38 38 H 0.96997 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.07996 * 120.48115 * 0.02562 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1969 2.6405 0.0002 6 6 3.4975 3.8669 -0.0014 7 7 4.1474 4.9967 0.0031 8 7 5.5459 5.0237 -0.0015 9 6 6.2475 6.3097 -0.0020 10 6 6.4929 6.7562 -1.4447 11 6 7.2252 8.0997 -1.4452 12 6 7.4675 8.5392 -2.8661 13 1 7.1323 7.9222 -3.6868 14 6 8.1160 9.7294 -3.1185 15 7 8.5237 10.4810 -2.1191 16 14 8.4158 10.2746 -4.8799 17 1 7.1149 10.4192 -5.5814 18 1 9.1254 11.5791 -4.8803 19 1 9.2445 9.2593 -5.5780 20 6 6.2533 3.8767 -0.0001 21 8 7.4743 3.9079 0.0009 22 6 5.5794 2.6477 0.0002 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6768 1.9563 -0.8899 30 1 3.9900 0.6024 0.0006 31 1 2.4175 3.8690 -0.0015 32 1 7.2024 6.2029 0.5127 33 1 5.6398 7.0553 0.5107 34 1 5.5380 6.8631 -1.9593 35 1 7.1006 6.0107 -1.9574 36 1 6.6171 8.8451 -0.9325 37 1 8.1800 7.9933 -0.9303 38 1 8.9803 11.3181 -2.2967 39 1 6.1321 1.7199 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232379381.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:01 Heat of formation + Delta-G solvation = -18.062648 kcal Electronic energy + Delta-G solvation = -19217.863654 eV Core-core repulsion = 16159.980949 eV Total energy + Delta-G solvation = -3057.882705 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92978 -39.16665 -37.65954 -36.51883 -35.07389 -34.01560 -32.36244 -31.50051 -28.75016 -26.83506 -26.01414 -24.84635 -23.21116 -22.44098 -22.15893 -19.15054 -18.83304 -18.26364 -18.01928 -16.87174 -16.53653 -16.41019 -16.26550 -16.11813 -15.68866 -14.83841 -14.43369 -14.25952 -14.23406 -14.05567 -13.76507 -13.49409 -13.28939 -12.85366 -12.75835 -12.68230 -12.54943 -12.16056 -12.07256 -11.96156 -11.65363 -11.58507 -11.46381 -11.27554 -10.85171 -10.56745 -9.84704 -8.91959 -8.21213 -6.32882 -0.35182 0.91214 1.16467 1.38405 1.42628 1.50608 2.14808 2.40265 2.51585 3.11229 3.33296 3.43883 3.89431 3.98301 4.12903 4.14757 4.20809 4.39420 4.45976 4.55071 4.65988 4.75411 4.76337 4.80093 4.85208 4.97038 5.08093 5.13728 5.20110 5.23555 5.30972 5.45411 5.46170 5.66251 5.79775 5.93714 6.21437 6.42566 6.72061 6.80983 7.04931 7.35506 8.90574 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.003155 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.232882 B = 8872.732672 C = 9230.678665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.099 3.901 4 N -0.697 5.697 5 C 0.265 3.735 6 C 0.064 3.936 7 N -0.211 5.211 8 N -0.428 5.428 9 C 0.135 3.865 10 C -0.099 4.099 11 C 0.031 3.969 12 C -0.547 4.547 13 H 0.055 0.945 14 C 0.001 3.999 15 N -0.930 5.930 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.271 1.271 20 C 0.503 3.497 21 O -0.612 6.612 22 C -0.341 4.341 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.416 0.584 31 H 0.237 0.763 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.007 0.993 37 H -0.009 1.009 38 H 0.266 0.734 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.159 -22.788 5.935 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C -0.024 4.024 4 N -0.322 5.322 5 C 0.147 3.853 6 C -0.138 4.138 7 N -0.023 5.023 8 N -0.247 5.247 9 C 0.014 3.986 10 C -0.138 4.138 11 C -0.007 4.007 12 C -0.585 4.585 13 H 0.073 0.927 14 C -0.197 4.197 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.188 1.188 18 H -0.203 1.203 19 H -0.196 1.196 20 C 0.305 3.695 21 O -0.496 6.496 22 C -0.378 4.378 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.254 0.746 31 H 0.253 0.747 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.010 0.990 38 H 0.074 0.926 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.710 -21.600 5.998 30.519 hybrid contribution 1.201 -0.637 -0.716 1.536 sum -19.509 -22.237 5.282 30.050 Atomic orbital electron populations 1.21690 0.93898 1.02594 1.02722 1.21663 0.97282 0.94707 1.03263 1.22004 0.77130 0.99600 1.03628 1.44844 1.07326 1.04645 1.75424 1.18745 0.90618 0.88472 0.87495 1.24566 1.02866 0.85934 1.00410 1.75061 0.90702 1.27224 1.09328 1.49767 1.02158 1.08435 1.64389 1.21628 0.96531 0.81957 0.98500 1.21667 0.99778 0.97611 0.94747 1.18900 0.94160 0.91502 0.96150 1.21574 1.37886 1.05700 0.93369 0.92704 1.25993 0.95074 0.96544 1.02136 1.70085 1.40067 1.13652 1.33201 0.85460 0.78802 0.77493 0.79041 1.18826 1.20330 1.19614 1.17632 0.87891 0.85365 0.78603 1.90935 1.14785 1.87309 1.56590 1.21600 0.93286 0.97460 1.25423 0.91837 0.92033 0.92071 0.91091 0.90863 0.89527 0.89867 0.74612 0.74671 0.90440 0.87871 0.92339 0.94966 0.97423 0.99023 0.92572 0.82640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.32 9.91 71.98 0.71 0.39 16 2 C -0.13 -0.30 6.05 30.59 0.19 -0.11 16 3 C 0.10 0.34 4.91 86.38 0.42 0.76 16 4 N -0.70 -6.18 5.68 -339.10 -1.93 -8.10 16 5 C 0.27 4.74 6.67 38.84 0.26 5.00 16 6 C 0.06 1.13 10.59 85.64 0.91 2.04 16 7 N -0.21 -5.90 11.53 -56.40 -0.65 -6.55 16 8 N -0.43 -15.71 3.50 -473.15 -1.66 -17.37 16 9 C 0.14 5.57 5.69 86.38 0.49 6.06 16 10 C -0.10 -4.75 5.48 30.60 0.17 -4.58 16 11 C 0.03 1.74 4.97 29.85 0.15 1.89 16 12 C -0.55 -33.31 9.11 25.60 0.23 -33.08 16 13 H 0.05 3.24 7.74 -2.91 -0.02 3.22 16 14 C 0.00 0.03 5.46 84.65 0.46 0.49 16 15 N -0.93 -58.59 13.29 21.45 0.28 -58.31 16 16 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 20 C 0.50 19.50 7.47 84.71 0.63 20.13 16 21 O -0.61 -29.67 16.68 -5.80 -0.10 -29.77 16 22 C -0.34 -9.33 9.89 22.74 0.22 -9.10 16 23 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 24 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.09 0.12 7.95 -2.39 -0.02 0.10 16 29 H 0.08 0.19 7.95 -2.39 -0.02 0.17 16 30 H 0.42 2.77 8.47 -92.71 -0.79 1.99 16 31 H 0.24 1.59 6.77 -2.91 -0.02 1.57 16 32 H 0.08 3.44 7.40 -2.39 -0.02 3.42 16 33 H 0.10 3.83 8.14 -2.38 -0.02 3.81 16 34 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -82.55 331.81 3.08 -79.48 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 0.25 Total: 2.52 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: 4.85 Total: -10.11 kcal Atomic # 7 Polarization: -86.38 SS G_CDS: -3.95 Total: -90.33 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.10 Total: -29.77 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -82.55 3.08 -79.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232379381.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.413 kcal (2) G-P(sol) polarization free energy of solvation -82.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds