Wall clock time and date at job start Mon Mar 30 2020 05:27:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47377 * 2 1
4 4 N 1.46505 * 109.46990 * 179.97438 * 3 2 1
5 5 C 1.38355 * 119.99924 * 179.97438 * 4 3 2
6 6 C 1.41186 * 120.29950 * 359.97438 * 5 4 3
7 7 N 1.30336 * 120.39081 * 179.74953 * 6 5 4
8 8 N 1.39876 * 121.01609 * 0.53266 * 7 6 5
9 9 C 1.46496 * 119.72119 * 179.73934 * 8 7 6
10 10 C 1.52997 * 109.47294 * 269.72767 * 9 8 7
11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 8
12 12 C 1.50698 * 109.47184 * 179.97438 * 11 10 9
13 13 H 1.08005 * 119.99819 * 0.02562 * 12 11 10
14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10
15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11
16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11
17 17 H 1.48503 * 109.46926 * 60.00512 * 16 14 12
18 18 H 1.48506 * 109.46961 * 179.97438 * 16 14 12
19 19 H 1.48492 * 109.47227 * 300.00303 * 16 14 12
20 20 C 1.34760 * 120.55619 * 359.47038 * 8 7 6
21 21 O 1.22148 * 120.19681 * 180.27726 * 20 8 7
22 22 C 1.38253 * 120.30192 * 180.02562 * 5 4 3
23 23 H 1.09002 * 109.47392 * 300.00200 * 1 2 3
24 24 H 1.09001 * 109.47025 * 59.99878 * 1 2 3
25 25 H 1.08993 * 109.47531 * 179.97438 * 1 2 3
26 26 H 1.09002 * 109.47392 * 239.99800 * 2 1 3
27 27 H 1.09001 * 109.47025 * 120.00122 * 2 1 3
28 28 H 1.09002 * 109.46949 * 60.00125 * 3 2 1
29 29 H 1.08992 * 109.47217 * 299.99773 * 3 2 1
30 30 H 0.96994 * 119.99938 * 0.02562 * 4 3 2
31 31 H 1.08001 * 119.80784 * 0.04508 * 6 5 4
32 32 H 1.09001 * 109.47054 * 149.72499 * 9 8 7
33 33 H 1.09004 * 109.47074 * 29.73013 * 9 8 7
34 34 H 1.09001 * 109.46832 * 60.00150 * 10 9 8
35 35 H 1.08993 * 109.47194 * 299.99671 * 10 9 8
36 36 H 1.09001 * 109.46801 * 300.00272 * 11 10 9
37 37 H 1.09001 * 109.46998 * 59.99868 * 11 10 9
38 38 H 0.96997 * 119.99752 * 179.97438 * 15 14 12
39 39 H 1.07996 * 120.48115 * 0.02562 * 22 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5051 1.4424 0.0006
5 6 4.1969 2.6405 0.0002
6 6 3.4975 3.8669 -0.0014
7 7 4.1474 4.9967 0.0031
8 7 5.5459 5.0237 -0.0015
9 6 6.2475 6.3097 -0.0020
10 6 6.4929 6.7562 -1.4447
11 6 7.2252 8.0997 -1.4452
12 6 7.4675 8.5392 -2.8661
13 1 7.1323 7.9222 -3.6868
14 6 8.1160 9.7294 -3.1185
15 7 8.5237 10.4810 -2.1191
16 14 8.4158 10.2746 -4.8799
17 1 7.1149 10.4192 -5.5814
18 1 9.1254 11.5791 -4.8803
19 1 9.2445 9.2593 -5.5780
20 6 6.2533 3.8767 -0.0001
21 8 7.4743 3.9079 0.0009
22 6 5.5794 2.6477 0.0002
23 1 -0.3634 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 -0.3634 -1.0276 -0.0005
26 1 1.8934 -0.5139 -0.8900
27 1 1.8933 -0.5139 0.8900
28 1 1.6767 1.9563 0.8900
29 1 1.6768 1.9563 -0.8899
30 1 3.9900 0.6024 0.0006
31 1 2.4175 3.8690 -0.0015
32 1 7.2024 6.2029 0.5127
33 1 5.6398 7.0553 0.5107
34 1 5.5380 6.8631 -1.9593
35 1 7.1006 6.0107 -1.9574
36 1 6.6171 8.8451 -0.9325
37 1 8.1800 7.9933 -0.9303
38 1 8.9803 11.3181 -2.2967
39 1 6.1321 1.7199 0.0002
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000232379381.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:27:01
Heat of formation + Delta-G solvation = -18.062648 kcal
Electronic energy + Delta-G solvation = -19217.863654 eV
Core-core repulsion = 16159.980949 eV
Total energy + Delta-G solvation = -3057.882705 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 265.153 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-41.92978 -39.16665 -37.65954 -36.51883 -35.07389 -34.01560 -32.36244 -31.50051
-28.75016 -26.83506 -26.01414 -24.84635 -23.21116 -22.44098 -22.15893 -19.15054
-18.83304 -18.26364 -18.01928 -16.87174 -16.53653 -16.41019 -16.26550 -16.11813
-15.68866 -14.83841 -14.43369 -14.25952 -14.23406 -14.05567 -13.76507 -13.49409
-13.28939 -12.85366 -12.75835 -12.68230 -12.54943 -12.16056 -12.07256 -11.96156
-11.65363 -11.58507 -11.46381 -11.27554 -10.85171 -10.56745 -9.84704 -8.91959
-8.21213 -6.32882 -0.35182 0.91214 1.16467 1.38405 1.42628 1.50608
2.14808 2.40265 2.51585 3.11229 3.33296 3.43883 3.89431 3.98301
4.12903 4.14757 4.20809 4.39420 4.45976 4.55071 4.65988 4.75411
4.76337 4.80093 4.85208 4.97038 5.08093 5.13728 5.20110 5.23555
5.30972 5.45411 5.46170 5.66251 5.79775 5.93714 6.21437 6.42566
6.72061 6.80983 7.04931 7.35506 8.90574
Molecular weight = 265.15amu
Principal moments of inertia in cm(-1)
A = 0.032391 B = 0.003155 C = 0.003033
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 864.232882 B = 8872.732672 C = 9230.678665
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.131 4.131
3 C 0.099 3.901
4 N -0.697 5.697
5 C 0.265 3.735
6 C 0.064 3.936
7 N -0.211 5.211
8 N -0.428 5.428
9 C 0.135 3.865
10 C -0.099 4.099
11 C 0.031 3.969
12 C -0.547 4.547
13 H 0.055 0.945
14 C 0.001 3.999
15 N -0.930 5.930
16 Si 0.968 3.032
17 H -0.264 1.264
18 H -0.278 1.278
19 H -0.271 1.271
20 C 0.503 3.497
21 O -0.612 6.612
22 C -0.341 4.341
23 H 0.063 0.937
24 H 0.061 0.939
25 H 0.060 0.940
26 H 0.070 0.930
27 H 0.073 0.927
28 H 0.087 0.913
29 H 0.083 0.917
30 H 0.416 0.584
31 H 0.237 0.763
32 H 0.077 0.923
33 H 0.103 0.897
34 H 0.058 0.942
35 H 0.031 0.969
36 H 0.007 0.993
37 H -0.009 1.009
38 H 0.266 0.734
39 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.159 -22.788 5.935 31.658
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.169 4.169
3 C -0.024 4.024
4 N -0.322 5.322
5 C 0.147 3.853
6 C -0.138 4.138
7 N -0.023 5.023
8 N -0.247 5.247
9 C 0.014 3.986
10 C -0.138 4.138
11 C -0.007 4.007
12 C -0.585 4.585
13 H 0.073 0.927
14 C -0.197 4.197
15 N -0.570 5.570
16 Si 0.792 3.208
17 H -0.188 1.188
18 H -0.203 1.203
19 H -0.196 1.196
20 C 0.305 3.695
21 O -0.496 6.496
22 C -0.378 4.378
23 H 0.082 0.918
24 H 0.080 0.920
25 H 0.079 0.921
26 H 0.089 0.911
27 H 0.091 0.909
28 H 0.105 0.895
29 H 0.101 0.899
30 H 0.254 0.746
31 H 0.253 0.747
32 H 0.096 0.904
33 H 0.121 0.879
34 H 0.077 0.923
35 H 0.050 0.950
36 H 0.026 0.974
37 H 0.010 0.990
38 H 0.074 0.926
39 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges -20.710 -21.600 5.998 30.519
hybrid contribution 1.201 -0.637 -0.716 1.536
sum -19.509 -22.237 5.282 30.050
Atomic orbital electron populations
1.21690 0.93898 1.02594 1.02722 1.21663 0.97282 0.94707 1.03263
1.22004 0.77130 0.99600 1.03628 1.44844 1.07326 1.04645 1.75424
1.18745 0.90618 0.88472 0.87495 1.24566 1.02866 0.85934 1.00410
1.75061 0.90702 1.27224 1.09328 1.49767 1.02158 1.08435 1.64389
1.21628 0.96531 0.81957 0.98500 1.21667 0.99778 0.97611 0.94747
1.18900 0.94160 0.91502 0.96150 1.21574 1.37886 1.05700 0.93369
0.92704 1.25993 0.95074 0.96544 1.02136 1.70085 1.40067 1.13652
1.33201 0.85460 0.78802 0.77493 0.79041 1.18826 1.20330 1.19614
1.17632 0.87891 0.85365 0.78603 1.90935 1.14785 1.87309 1.56590
1.21600 0.93286 0.97460 1.25423 0.91837 0.92033 0.92071 0.91091
0.90863 0.89527 0.89867 0.74612 0.74671 0.90440 0.87871 0.92339
0.94966 0.97423 0.99023 0.92572 0.82640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.32 9.91 71.98 0.71 0.39 16
2 C -0.13 -0.30 6.05 30.59 0.19 -0.11 16
3 C 0.10 0.34 4.91 86.38 0.42 0.76 16
4 N -0.70 -6.18 5.68 -339.10 -1.93 -8.10 16
5 C 0.27 4.74 6.67 38.84 0.26 5.00 16
6 C 0.06 1.13 10.59 85.64 0.91 2.04 16
7 N -0.21 -5.90 11.53 -56.40 -0.65 -6.55 16
8 N -0.43 -15.71 3.50 -473.15 -1.66 -17.37 16
9 C 0.14 5.57 5.69 86.38 0.49 6.06 16
10 C -0.10 -4.75 5.48 30.60 0.17 -4.58 16
11 C 0.03 1.74 4.97 29.85 0.15 1.89 16
12 C -0.55 -33.31 9.11 25.60 0.23 -33.08 16
13 H 0.05 3.24 7.74 -2.91 -0.02 3.22 16
14 C 0.00 0.03 5.46 84.65 0.46 0.49 16
15 N -0.93 -58.59 13.29 21.45 0.28 -58.31 16
16 Si 0.97 46.19 29.54 68.60 2.03 48.22 16
17 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16
18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16
19 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16
20 C 0.50 19.50 7.47 84.71 0.63 20.13 16
21 O -0.61 -29.67 16.68 -5.80 -0.10 -29.77 16
22 C -0.34 -9.33 9.89 22.74 0.22 -9.10 16
23 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16
24 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16
25 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16
26 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16
27 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16
28 H 0.09 0.12 7.95 -2.39 -0.02 0.10 16
29 H 0.08 0.19 7.95 -2.39 -0.02 0.17 16
30 H 0.42 2.77 8.47 -92.71 -0.79 1.99 16
31 H 0.24 1.59 6.77 -2.91 -0.02 1.57 16
32 H 0.08 3.44 7.40 -2.39 -0.02 3.42 16
33 H 0.10 3.83 8.14 -2.38 -0.02 3.81 16
34 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16
35 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16
36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16
37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16
38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16
39 H 0.16 3.82 8.06 -2.91 -0.02 3.80 16
Total: -1.00 -82.55 331.81 3.08 -79.48
By element:
Atomic # 1 Polarization: 2.27 SS G_CDS: 0.25 Total: 2.52 kcal
Atomic # 6 Polarization: -14.96 SS G_CDS: 4.85 Total: -10.11 kcal
Atomic # 7 Polarization: -86.38 SS G_CDS: -3.95 Total: -90.33 kcal
Atomic # 8 Polarization: -29.67 SS G_CDS: -0.10 Total: -29.77 kcal
Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal
Total: -82.55 3.08 -79.48 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000232379381.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.413 kcal
(2) G-P(sol) polarization free energy of solvation -82.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.140 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.063 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds