Wall clock time and date at job start Mon Mar 30 2020 04:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.50571 * 2 1 4 4 C 1.53125 * 109.50529 * 120.08034 * 2 1 3 5 5 C 1.53120 * 109.16123 * 177.59859 * 4 2 1 6 6 C 1.53035 * 109.27608 * 302.34051 * 5 4 2 7 7 N 1.46841 * 109.52600 * 59.18280 * 6 5 4 8 8 C 1.46852 * 111.23029 * 298.27855 * 7 6 5 9 9 H 1.08999 * 109.43145 * 301.68296 * 8 7 6 10 10 C 1.50707 * 109.49271 * 181.71640 * 8 7 6 11 11 O 1.21289 * 120.00472 * 319.96357 * 10 8 7 12 12 N 1.34774 * 119.99595 * 139.96892 * 10 8 7 13 13 C 1.37097 * 119.99965 * 184.82220 * 12 10 8 14 14 H 1.08006 * 120.00010 * 347.52953 * 13 12 10 15 15 C 1.38950 * 120.00172 * 167.51966 * 13 12 10 16 16 N 1.31411 * 120.00164 * 358.52777 * 15 13 12 17 17 Si 1.86800 * 120.00005 * 178.52216 * 15 13 12 18 18 H 1.48501 * 109.47194 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47156 * 120.00555 * 17 15 13 20 20 H 1.48501 * 109.47136 * 240.00508 * 17 15 13 21 21 C 1.46498 * 120.00419 * 4.82287 * 12 10 8 22 22 C 1.47201 * 109.47202 * 262.85396 * 21 12 10 23 23 N 5.46697 * 79.61352 * 225.13426 * 2 1 3 24 24 H 1.08994 * 109.46779 * 66.45724 * 1 2 3 25 25 H 1.08991 * 109.47202 * 306.45838 * 1 2 3 26 26 H 1.09004 * 109.46636 * 186.45655 * 1 2 3 27 27 H 1.08998 * 109.47583 * 59.99571 * 3 2 1 28 28 H 1.09001 * 109.47641 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47011 * 300.00275 * 3 2 1 30 30 H 1.09007 * 109.51885 * 297.49862 * 4 2 1 31 31 H 1.08996 * 109.52433 * 57.68753 * 4 2 1 32 32 H 1.08998 * 109.50661 * 62.28524 * 5 4 2 33 33 H 1.09000 * 109.50095 * 182.36376 * 5 4 2 34 34 H 1.09004 * 109.46388 * 179.20064 * 6 5 4 35 35 H 1.08998 * 109.46278 * 299.16226 * 6 5 4 36 36 H 1.00898 * 111.00700 * 174.15801 * 7 6 5 37 37 H 0.97003 * 120.00091 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47201 * 22.85386 * 21 12 10 39 39 H 1.08997 * 109.47533 * 142.85661 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4421 0.0000 4 6 2.0413 -0.7234 1.2490 5 6 3.5712 -0.7715 1.2110 6 6 4.0230 -1.4730 -0.0719 7 7 3.5093 -0.7426 -1.2376 8 6 2.0410 -0.7231 -1.2482 9 1 1.6648 -1.7461 -1.2549 10 6 1.5566 -0.0021 -2.4798 11 8 2.1284 0.9969 -2.8621 12 7 0.4878 -0.4674 -3.1563 13 6 0.1069 0.1292 -4.3304 14 1 0.5267 1.0836 -4.6123 15 6 -0.8191 -0.4940 -5.1579 16 7 -1.3081 -1.6687 -4.8294 17 14 -1.3692 0.3380 -6.7374 18 1 -0.6750 1.6434 -6.8769 19 1 -1.0324 -0.5276 -7.8961 20 1 -2.8370 0.5595 -6.6950 21 6 -0.2669 -1.6106 -2.6371 22 6 0.1910 -2.8426 -3.2998 23 7 0.5444 -3.7935 -3.8113 24 1 -0.3633 0.4105 -0.9421 25 1 -0.3633 0.6106 0.8265 26 1 -0.3633 -1.0212 0.1156 27 1 1.6778 1.9563 0.8899 28 1 3.1309 1.4416 -0.0005 29 1 1.6778 1.9562 -0.8900 30 1 1.7157 -0.1863 2.1399 31 1 1.6453 -1.7387 1.2696 32 1 3.9678 0.2436 1.2297 33 1 3.9396 -1.3221 2.0766 34 1 5.1121 -1.4963 -0.1089 35 1 3.6376 -2.4925 -0.0833 36 1 3.8720 -1.1301 -2.0957 37 1 -1.9548 -2.1036 -5.4069 38 1 -0.1056 -1.6946 -1.5624 39 1 -1.3289 -1.4649 -2.8348 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232786673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:17 Heat of formation + Delta-G solvation = 8.033997 kcal Electronic energy + Delta-G solvation = -21749.274121 eV Core-core repulsion = 18692.523052 eV Total energy + Delta-G solvation = -3056.751070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 265.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16970 -37.68622 -35.72319 -34.20971 -33.68601 -32.01464 -31.16964 -27.62252 -26.70085 -26.68832 -25.13388 -23.55068 -21.44507 -19.68748 -18.01289 -17.70189 -16.67574 -16.31091 -15.78931 -14.79777 -14.59337 -14.57897 -13.92872 -13.65684 -13.23746 -13.19712 -13.00750 -12.69202 -12.52205 -12.03436 -11.86042 -11.74450 -11.51352 -11.30957 -11.23920 -11.17351 -11.06943 -10.76916 -10.48887 -10.38833 -10.33854 -10.22726 -10.16610 -9.99922 -9.25289 -8.45336 -8.09801 -8.00770 -6.42682 -4.02635 3.08562 3.21266 3.26990 3.55924 3.79139 4.07617 4.19391 4.38091 4.78066 4.90330 4.96371 5.10474 5.13624 5.28421 5.37588 5.47708 5.63683 5.67493 5.72322 5.85850 5.89068 5.94238 6.01781 6.04760 6.15594 6.19903 6.28903 6.44773 6.46479 6.50346 6.72284 6.79759 7.03047 7.25550 7.44494 7.63580 7.90243 8.30554 8.88485 9.01594 9.20583 9.75119 10.55585 Molecular weight = 265.15amu Principal moments of inertia in cm(-1) A = 0.026086 B = 0.007053 C = 0.006532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.102779 B = 3968.921002 C = 4285.589931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.048 4.048 3 C -0.132 4.132 4 C -0.109 4.109 5 C -0.119 4.119 6 C 0.059 3.941 7 N -0.664 5.664 8 C 0.085 3.915 9 H 0.045 0.955 10 C 0.466 3.534 11 O -0.551 6.551 12 N -0.451 5.451 13 C -0.296 4.296 14 H 0.111 0.889 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.936 3.064 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.280 1.280 21 C 0.216 3.784 22 C 0.259 3.741 23 N -0.494 5.494 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.345 0.655 37 H 0.272 0.728 38 H 0.078 0.922 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.299 0.919 11.993 12.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.049 4.049 3 C -0.189 4.189 4 C -0.147 4.147 5 C -0.156 4.156 6 C -0.070 4.070 7 N -0.296 5.296 8 C -0.029 4.029 9 H 0.062 0.938 10 C 0.253 3.747 11 O -0.431 6.431 12 N -0.173 5.173 13 C -0.423 4.423 14 H 0.128 0.872 15 C -0.175 4.175 16 N -0.540 5.540 17 Si 0.763 3.237 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.205 1.205 21 C 0.089 3.911 22 C -0.058 4.058 23 N -0.175 5.175 24 H 0.090 0.910 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.164 0.836 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.022 0.556 11.224 11.637 hybrid contribution -0.812 -0.554 -1.043 1.434 sum 2.210 0.002 10.181 10.418 Atomic orbital electron populations 1.22128 0.94454 1.01580 1.03105 1.20435 0.94966 0.96831 0.92704 1.21804 1.02173 0.93793 1.01143 1.21671 0.95573 1.00011 0.97459 1.21631 0.96013 1.01665 0.96323 1.21915 0.99380 0.94526 0.91181 1.59930 1.06589 1.57927 1.05187 1.21510 0.88815 0.97623 0.94928 0.93765 1.19824 0.81508 0.87471 0.85861 1.90539 1.56890 1.26185 1.69525 1.43717 1.24912 1.26826 1.21841 1.19902 1.22383 1.04720 0.95299 0.87181 1.25275 0.97035 0.95614 0.99572 1.69606 1.31372 1.14496 1.38513 0.85682 0.78274 0.79133 0.80628 1.19181 1.20855 1.20545 1.19271 1.00427 0.78340 0.93072 1.29225 0.91132 0.93496 0.91961 1.80867 1.11549 1.14027 1.11069 0.91034 0.92363 0.92511 0.94371 0.91449 0.91248 0.91739 0.92386 0.90747 0.92094 0.90933 0.95640 0.83631 0.91642 0.90411 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 7.09 37.16 0.26 -1.92 16 2 C -0.05 -0.72 0.54 -154.43 -0.08 -0.81 16 3 C -0.13 -2.11 7.55 37.15 0.28 -1.83 16 4 C -0.11 -1.33 4.79 -26.60 -0.13 -1.46 16 5 C -0.12 -1.39 5.74 -26.65 -0.15 -1.54 16 6 C 0.06 0.78 6.55 -3.84 -0.03 0.75 16 7 N -0.66 -10.98 5.58 -107.99 -0.60 -11.58 16 8 C 0.08 1.48 1.63 -68.87 -0.11 1.37 16 9 H 0.04 0.78 5.99 -51.93 -0.31 0.47 16 10 C 0.47 10.23 5.03 -10.98 -0.06 10.18 16 11 O -0.55 -13.90 14.73 5.55 0.08 -13.82 16 12 N -0.45 -10.34 2.27 -117.93 -0.27 -10.61 16 13 C -0.30 -7.54 9.48 -14.93 -0.14 -7.68 16 14 H 0.11 2.96 7.21 -52.48 -0.38 2.58 16 15 C 0.03 0.62 5.35 -17.47 -0.09 0.53 16 16 N -0.90 -22.24 7.99 55.50 0.44 -21.80 16 17 Si 0.94 20.17 29.55 -169.99 -5.02 15.14 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 C 0.22 4.39 4.08 -6.83 -0.03 4.36 16 22 C 0.26 5.92 12.88 -20.76 -0.27 5.65 16 23 N -0.49 -12.07 18.54 42.15 0.78 -11.29 16 24 H 0.07 1.18 6.15 -51.93 -0.32 0.86 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.71 6.89 -51.93 -0.36 0.35 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.11 6.01 -51.93 -0.31 0.80 16 29 H 0.07 1.33 6.27 -51.93 -0.33 1.00 16 30 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.92 6.58 -51.93 -0.34 0.57 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.35 5.94 8.78 -39.29 -0.35 5.59 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.08 1.31 3.48 -51.93 -0.18 1.13 16 39 H 0.14 2.94 6.32 -51.93 -0.33 2.61 16 LS Contribution 299.69 15.07 4.52 4.52 Total: -1.00 -28.96 299.69 -5.91 -34.87 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.29 Total: 6.96 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.54 Total: 7.61 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.35 Total: -55.28 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.96 -5.91 -34.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232786673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.901 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds